Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 120.00246 * 2 1 4 4 N 1.46894 * 109.47092 * 123.00537 * 3 2 1 5 5 C 1.46895 * 111.00152 * 63.22325 * 4 3 2 6 6 C 1.50708 * 109.47122 * 66.04828 * 5 4 3 7 7 H 1.07999 * 119.99720 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99920 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00060 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47314 * 119.99557 * 10 8 6 13 13 H 1.48498 * 109.47508 * 239.99710 * 10 8 6 14 14 C 1.46904 * 110.99972 * 299.26680 * 4 3 2 15 15 C 1.50699 * 109.47205 * 288.00830 * 14 4 3 16 16 C 1.38290 * 119.94712 * 272.68539 * 15 14 4 17 17 C 1.38120 * 120.05406 * 180.25684 * 16 15 14 18 18 C 1.38757 * 119.94438 * 359.48715 * 17 16 15 19 19 O 1.35898 * 120.05311 * 180.27567 * 18 17 16 20 20 C 1.42896 * 117.00295 * 0.02562 * 19 18 17 21 21 C 1.38705 * 119.88700 * 0.25944 * 18 17 16 22 22 C 1.50707 * 120.02754 * 180.02562 * 21 18 17 23 23 C 1.38170 * 119.94869 * 359.97438 * 21 18 17 24 24 H 1.07996 * 120.00035 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99412 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00331 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46719 * 3.00022 * 3 2 1 28 28 H 1.09007 * 109.46855 * 243.00570 * 3 2 1 29 29 H 1.09006 * 109.47189 * 186.04297 * 5 4 3 30 30 H 1.08994 * 109.47370 * 306.04494 * 5 4 3 31 31 H 0.97008 * 120.00214 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46631 * 168.00939 * 14 4 3 33 33 H 1.08998 * 109.46655 * 48.01501 * 14 4 3 34 34 H 1.08000 * 119.97125 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.02676 * 179.76740 * 17 16 15 36 36 H 1.09001 * 109.47166 * 299.99466 * 20 19 18 37 37 H 1.08999 * 109.47523 * 59.99776 * 20 19 18 38 38 H 1.09000 * 109.47361 * 180.02562 * 20 19 18 39 39 H 1.09006 * 109.46697 * 89.99476 * 22 21 18 40 40 H 1.08998 * 109.47279 * 209.99381 * 22 21 18 41 41 H 1.08997 * 109.46898 * 330.00038 * 22 21 18 42 42 H 1.08000 * 119.97207 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9617 1.3519 1.1614 5 6 3.9787 0.2948 1.0835 6 6 4.8911 0.5606 -0.0862 7 1 4.7311 1.4280 -0.7095 8 6 5.9293 -0.3039 -0.3611 9 7 6.1237 -1.3604 0.3977 10 14 7.0597 0.0252 -1.8113 11 1 6.6315 1.2690 -2.5004 12 1 8.4542 0.1840 -1.3259 13 1 6.9927 -1.1152 -2.7601 14 6 2.2041 1.2621 2.4168 15 6 1.4610 2.5525 2.6485 16 6 2.0824 3.5986 3.3058 17 6 1.4016 4.7803 3.5240 18 6 0.0967 4.9213 3.0737 19 8 -0.5733 6.0851 3.2823 20 6 0.1272 7.1223 3.9718 21 6 -0.5225 3.8724 2.4101 22 6 -1.9395 4.0222 1.9193 23 6 0.1611 2.6905 2.1986 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3565 2.1329 0.0538 28 1 2.6492 1.3865 -0.9158 29 1 4.5622 0.2833 2.0041 30 1 3.4900 -0.6704 0.9510 31 1 6.8539 -1.9689 0.2041 32 1 2.8914 1.0850 3.2441 33 1 1.4922 0.4391 2.3534 34 1 3.0996 3.4900 3.6520 35 1 1.8860 5.5956 4.0406 36 1 0.4164 6.7696 4.9617 37 1 1.0194 7.3951 3.4082 38 1 -0.5202 7.9936 4.0719 39 1 -1.9322 4.4198 0.9043 40 1 -2.4308 3.0492 1.9248 41 1 -2.4802 4.7061 2.5734 42 1 -0.3208 1.8734 1.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292843028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = 7.671466 kcal Electronic energy + Delta-G solvation = -21260.376848 eV Core-core repulsion = 18206.235739 eV Total energy + Delta-G solvation = -3054.141109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17303 -38.16533 -36.58758 -33.09225 -32.88475 -31.93623 -30.47560 -27.82100 -27.09683 -26.68855 -25.68937 -23.60311 -21.87926 -21.18985 -20.27221 -18.74995 -17.84134 -16.34430 -16.29670 -15.78184 -15.10666 -14.99732 -14.65860 -14.25815 -13.98636 -13.80044 -13.62581 -13.38022 -12.97689 -12.89555 -12.25411 -12.16042 -11.97646 -11.95067 -11.37587 -11.28186 -11.18720 -10.92105 -10.82781 -10.68040 -10.61244 -10.50545 -10.37487 -9.83591 -9.26857 -8.85275 -8.59982 -8.44189 -7.82634 -7.20277 -6.02821 -4.03630 1.54468 1.64116 2.73728 3.30526 3.30904 3.38643 3.43585 3.92280 4.44033 4.87250 4.92170 5.02547 5.05618 5.15191 5.28666 5.33429 5.34850 5.45131 5.49211 5.53325 5.67167 5.72290 5.74609 5.81312 5.93124 6.05623 6.09658 6.25929 6.37177 6.43959 6.54085 6.58925 6.67469 6.96558 6.98424 7.09066 7.12666 7.36568 7.37850 7.49126 7.81135 8.08938 8.19903 8.54691 9.04237 9.60565 11.07897 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.004293 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.921067 B = 6521.385396 C = 7153.204830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.156 4.156 3 C 0.084 3.916 4 N -0.522 5.522 5 C 0.189 3.811 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.089 3.911 15 C -0.089 4.089 16 C -0.066 4.066 17 C -0.205 4.205 18 C 0.112 3.888 19 O -0.319 6.319 20 C 0.029 3.971 21 C -0.121 4.121 22 C -0.101 4.101 23 C -0.082 4.082 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.029 0.971 30 H -0.002 1.002 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 11.235 6.033 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.176 4.176 3 C -0.044 4.044 4 N -0.245 5.245 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.039 4.039 15 C -0.089 4.089 16 C -0.084 4.084 17 C -0.224 4.224 18 C 0.067 3.933 19 O -0.233 6.233 20 C -0.066 4.066 21 C -0.122 4.122 22 C -0.158 4.158 23 C -0.101 4.101 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.445 11.595 6.003 18.741 hybrid contribution 0.668 -0.687 -0.608 1.135 sum -12.777 10.908 5.394 17.644 Atomic orbital electron populations 1.23705 0.95991 1.00748 1.05189 1.23933 0.96204 1.01600 0.95845 1.21328 0.94458 0.92381 0.96263 1.62407 1.12651 1.50393 0.99017 1.19805 0.88617 0.87277 0.97894 1.21190 1.11965 1.09063 1.12040 0.91851 1.24964 0.97651 0.95111 0.96819 1.69966 1.31410 1.13700 1.38805 0.86480 0.80602 0.78159 0.82425 1.19661 1.21063 1.21156 1.21010 0.95965 0.92237 0.94676 1.19866 0.93767 0.96782 0.98519 1.20837 0.99161 0.91699 0.96721 1.21152 0.94456 0.99917 1.06856 1.18761 0.91112 0.86017 0.97374 1.86012 1.41633 1.21908 1.73754 1.22987 0.98057 0.89487 0.96112 1.19161 0.97411 0.92729 1.02886 1.20563 0.92224 1.02005 1.01009 1.20952 0.94244 0.96368 0.98515 0.89411 0.89131 0.87029 0.92038 0.89189 0.95309 0.98459 0.93027 0.90763 0.94383 0.85678 0.85917 0.92906 0.92757 0.88678 0.91699 0.91941 0.91573 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.25 13.43 29.01 0.39 -2.86 16 2 C -0.16 -2.80 7.43 -36.02 -0.27 -3.07 16 3 C 0.08 1.62 5.39 -4.98 -0.03 1.60 16 4 N -0.52 -11.04 4.65 -238.96 -1.11 -12.15 16 5 C 0.19 4.78 4.55 -4.97 -0.02 4.76 16 6 C -0.50 -13.89 8.47 -34.44 -0.29 -14.19 16 7 H 0.06 1.75 7.12 -52.49 -0.37 1.37 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.09 1.62 4.97 -4.97 -0.02 1.59 16 15 C -0.09 -1.44 4.99 -104.60 -0.52 -1.96 16 16 C -0.07 -1.00 9.71 -39.61 -0.38 -1.39 16 17 C -0.21 -2.81 9.04 -39.43 -0.36 -3.17 16 18 C 0.11 1.57 6.66 -39.22 -0.26 1.31 16 19 O -0.32 -3.98 9.54 -19.42 -0.19 -4.17 16 20 C 0.03 0.25 9.81 101.05 0.99 1.24 16 21 C -0.12 -1.70 5.89 -104.47 -0.62 -2.32 16 22 C -0.10 -1.16 9.79 36.01 0.35 -0.81 16 23 C -0.08 -1.23 7.91 -39.60 -0.31 -1.54 16 24 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 25 H 0.09 1.23 6.54 -52.48 -0.34 0.88 16 26 H 0.11 2.24 6.80 -52.48 -0.36 1.88 16 27 H 0.06 1.10 6.08 -51.93 -0.32 0.78 16 28 H 0.09 1.91 6.78 -51.93 -0.35 1.56 16 29 H 0.03 0.78 7.86 -51.93 -0.41 0.38 16 30 H 0.00 -0.06 6.31 -51.93 -0.33 -0.39 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.35 7.77 -51.93 -0.40 0.95 16 33 H 0.04 0.68 6.66 -51.93 -0.35 0.34 16 34 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 36 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 42 H 0.13 1.80 5.70 -52.49 -0.30 1.50 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -29.89 337.40 -8.23 -38.13 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.29 Total: 1.58 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.45 Total: -19.35 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.37 Total: -37.80 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.89 -8.23 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292843028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.798 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds