Wall clock time and date at job start Mon Mar 30 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 120.00246 * 2 1 4 4 N 1.46894 * 109.47092 * 123.00537 * 3 2 1 5 5 C 1.46895 * 111.00152 * 63.22325 * 4 3 2 6 6 C 1.50708 * 109.47122 * 66.04828 * 5 4 3 7 7 H 1.07999 * 119.99720 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99920 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00060 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99998 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47314 * 119.99557 * 10 8 6 13 13 H 1.48498 * 109.47508 * 239.99710 * 10 8 6 14 14 C 1.46904 * 110.99972 * 299.26680 * 4 3 2 15 15 C 1.50699 * 109.47205 * 288.00830 * 14 4 3 16 16 C 1.38290 * 119.94712 * 272.68539 * 15 14 4 17 17 C 1.38120 * 120.05406 * 180.25684 * 16 15 14 18 18 C 1.38757 * 119.94438 * 359.48715 * 17 16 15 19 19 O 1.35898 * 120.05311 * 180.27567 * 18 17 16 20 20 C 1.42896 * 117.00295 * 0.02562 * 19 18 17 21 21 C 1.38705 * 119.88700 * 0.25944 * 18 17 16 22 22 C 1.50707 * 120.02754 * 180.02562 * 21 18 17 23 23 C 1.38170 * 119.94869 * 359.97438 * 21 18 17 24 24 H 1.07996 * 120.00035 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99412 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00331 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46719 * 3.00022 * 3 2 1 28 28 H 1.09007 * 109.46855 * 243.00570 * 3 2 1 29 29 H 1.09006 * 109.47189 * 186.04297 * 5 4 3 30 30 H 1.08994 * 109.47370 * 306.04494 * 5 4 3 31 31 H 0.97008 * 120.00214 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46631 * 168.00939 * 14 4 3 33 33 H 1.08998 * 109.46655 * 48.01501 * 14 4 3 34 34 H 1.08000 * 119.97125 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.02676 * 179.76740 * 17 16 15 36 36 H 1.09001 * 109.47166 * 299.99466 * 20 19 18 37 37 H 1.08999 * 109.47523 * 59.99776 * 20 19 18 38 38 H 1.09000 * 109.47361 * 180.02562 * 20 19 18 39 39 H 1.09006 * 109.46697 * 89.99476 * 22 21 18 40 40 H 1.08998 * 109.47279 * 209.99381 * 22 21 18 41 41 H 1.08997 * 109.46898 * 330.00038 * 22 21 18 42 42 H 1.08000 * 119.97207 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9617 1.3519 1.1614 5 6 3.9787 0.2948 1.0835 6 6 4.8911 0.5606 -0.0862 7 1 4.7311 1.4280 -0.7095 8 6 5.9293 -0.3039 -0.3611 9 7 6.1237 -1.3604 0.3977 10 14 7.0597 0.0252 -1.8113 11 1 6.6315 1.2690 -2.5004 12 1 8.4542 0.1840 -1.3259 13 1 6.9927 -1.1152 -2.7601 14 6 2.2041 1.2621 2.4168 15 6 1.4610 2.5525 2.6485 16 6 2.0824 3.5986 3.3058 17 6 1.4016 4.7803 3.5240 18 6 0.0967 4.9213 3.0737 19 8 -0.5733 6.0851 3.2823 20 6 0.1272 7.1223 3.9718 21 6 -0.5225 3.8724 2.4101 22 6 -1.9395 4.0222 1.9193 23 6 0.1611 2.6905 2.1986 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3565 2.1329 0.0538 28 1 2.6492 1.3865 -0.9158 29 1 4.5622 0.2833 2.0041 30 1 3.4900 -0.6704 0.9510 31 1 6.8539 -1.9689 0.2041 32 1 2.8914 1.0850 3.2441 33 1 1.4922 0.4391 2.3534 34 1 3.0996 3.4900 3.6520 35 1 1.8860 5.5956 4.0406 36 1 0.4164 6.7696 4.9617 37 1 1.0194 7.3951 3.4082 38 1 -0.5202 7.9936 4.0719 39 1 -1.9322 4.4198 0.9043 40 1 -2.4308 3.0492 1.9248 41 1 -2.4802 4.7061 2.5734 42 1 -0.3208 1.8734 1.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292843028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:05 Heat of formation + Delta-G solvation = -9.723272 kcal Electronic energy + Delta-G solvation = -21261.131140 eV Core-core repulsion = 18206.235739 eV Total energy + Delta-G solvation = -3054.895401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22764 -39.48217 -37.87676 -34.91128 -34.24210 -33.32311 -31.81455 -29.05449 -28.41096 -27.98624 -26.95803 -25.34634 -23.07192 -22.70688 -21.50456 -20.23000 -18.83618 -18.38560 -17.38525 -16.82516 -16.67261 -16.56719 -15.99050 -15.79401 -15.28123 -15.14670 -14.70775 -14.55654 -14.30874 -14.01215 -13.96039 -13.25467 -13.20017 -13.01168 -12.93154 -12.70433 -12.60743 -12.56037 -12.36742 -12.17929 -12.10355 -11.80652 -11.70546 -11.58214 -11.24292 -10.61560 -10.24525 -9.69783 -9.00951 -8.84541 -8.18341 -6.27413 0.43824 0.49536 1.39693 1.40422 1.41165 1.54350 2.40870 2.43918 2.77277 3.14285 3.58171 3.87037 3.91467 4.01060 4.12014 4.25521 4.28947 4.41385 4.43288 4.46238 4.58057 4.64986 4.70759 4.76030 4.79144 4.84539 4.89437 4.95947 5.05963 5.10169 5.25875 5.31684 5.36871 5.44134 5.52861 5.65376 5.74825 5.79716 5.84719 5.89309 6.10206 6.37769 6.50743 6.67037 6.88769 7.41742 8.92358 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.004293 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.921067 B = 6521.385396 C = 7153.204830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.190 4.190 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.096 3.904 15 C -0.107 4.107 16 C -0.080 4.080 17 C -0.204 4.204 18 C 0.110 3.890 19 O -0.327 6.327 20 C 0.019 3.981 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.084 4.084 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.000 1.000 30 H -0.024 1.024 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 13.043 5.580 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.210 4.210 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.031 4.031 15 C -0.107 4.107 16 C -0.098 4.098 17 C -0.222 4.222 18 C 0.065 3.935 19 O -0.241 6.241 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.155 4.155 23 C -0.103 4.103 24 H 0.126 0.874 25 H 0.132 0.868 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.018 0.982 30 H -0.007 1.007 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.283 13.424 5.555 21.086 hybrid contribution 1.101 -1.153 -0.390 1.642 sum -14.182 12.271 5.166 19.452 Atomic orbital electron populations 1.23967 0.94607 1.02739 0.99934 1.23547 0.97237 0.99509 1.00713 1.21198 0.94134 0.93959 0.94264 1.62301 1.13448 1.48409 1.01105 1.19411 0.89170 0.87634 0.95759 1.21466 1.12568 1.08918 1.12594 0.92255 1.25829 0.99205 0.94789 0.99580 1.70087 1.32192 1.14648 1.40563 0.85406 0.78401 0.78289 0.78967 1.18916 1.20470 1.20466 1.20925 0.95566 0.93899 0.92754 1.19698 0.94553 0.96013 1.00465 1.20912 0.99322 0.92356 0.97229 1.21351 0.94549 0.99807 1.06522 1.18941 0.91115 0.86708 0.96721 1.86011 1.42195 1.21877 1.74025 1.23303 0.98817 0.89231 0.96223 1.19481 0.98623 0.92308 1.02466 1.20601 0.90607 1.03053 1.01276 1.20990 0.93633 0.97091 0.98559 0.87385 0.86843 0.90095 0.90099 0.91851 0.98226 1.00651 0.92797 0.91910 0.94231 0.86065 0.83644 0.91975 0.92337 0.86104 0.91009 0.90513 0.91155 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 13.43 67.78 0.91 -3.90 16 2 C -0.19 -6.87 7.43 25.65 0.19 -6.68 16 3 C 0.09 3.63 5.39 85.56 0.46 4.09 16 4 N -0.53 -23.29 4.65 -909.92 -4.23 -27.52 16 5 C 0.21 11.04 4.55 85.56 0.39 11.43 16 6 C -0.52 -29.54 8.47 25.60 0.22 -29.32 16 7 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 10 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.10 3.60 4.97 85.56 0.43 4.03 16 15 C -0.11 -3.43 4.99 -19.85 -0.10 -3.53 16 16 C -0.08 -2.41 9.71 22.25 0.22 -2.20 16 17 C -0.20 -5.26 9.04 22.37 0.20 -5.06 16 18 C 0.11 2.85 6.66 22.51 0.15 3.00 16 19 O -0.33 -7.26 9.54 -92.40 -0.88 -8.14 16 20 C 0.02 0.26 9.81 113.37 1.11 1.38 16 21 C -0.13 -3.31 5.89 -19.77 -0.12 -3.43 16 22 C -0.10 -1.96 9.79 71.24 0.70 -1.27 16 23 C -0.08 -2.38 7.91 22.26 0.18 -2.20 16 24 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 25 H 0.11 2.64 6.54 -2.91 -0.02 2.63 16 26 H 0.08 3.43 6.80 -2.91 -0.02 3.41 16 27 H 0.08 2.83 6.08 -2.39 -0.01 2.82 16 28 H 0.06 2.78 6.78 -2.38 -0.02 2.77 16 29 H 0.00 -0.02 7.86 -2.38 -0.02 -0.04 16 30 H -0.02 -1.38 6.31 -2.39 -0.02 -1.39 16 31 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 32 H 0.06 2.43 7.77 -2.38 -0.02 2.41 16 33 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16 34 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.15 2.96 6.30 -2.91 -0.02 2.94 16 36 H 0.06 0.77 7.66 -2.39 -0.02 0.76 16 37 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.08 1.29 8.09 -2.39 -0.02 1.28 16 41 H 0.07 1.34 7.53 -2.39 -0.02 1.32 16 42 H 0.14 3.48 5.70 -2.91 -0.02 3.46 16 Total: -1.00 -65.96 337.40 3.59 -62.37 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.00 Total: 15.61 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 5.39 Total: -32.99 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.94 Total: -83.69 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.88 Total: -8.14 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.96 3.59 -62.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292843028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.643 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds