Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00040 * 2 1 4 4 N 1.46898 * 109.47052 * 123.00219 * 3 2 1 5 5 C 1.46904 * 110.99976 * 63.22971 * 4 3 2 6 6 C 1.50699 * 109.47170 * 66.04460 * 5 4 3 7 7 H 1.07999 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00009 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99823 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00283 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47146 * 89.99950 * 10 8 6 12 12 H 1.48499 * 109.47423 * 210.00008 * 10 8 6 13 13 H 1.48503 * 109.47003 * 330.00167 * 10 8 6 14 14 C 1.46901 * 111.00019 * 299.27670 * 4 3 2 15 15 C 1.50693 * 109.47300 * 288.00804 * 14 4 3 16 16 C 1.38292 * 119.97209 * 92.42012 * 15 14 4 17 17 C 1.38238 * 120.11318 * 180.27538 * 16 15 14 18 18 C 1.38170 * 120.05455 * 359.45201 * 17 16 15 19 19 C 1.50699 * 120.02955 * 180.24640 * 18 17 16 20 20 C 1.38708 * 119.94284 * 0.57434 * 18 17 16 21 21 O 1.35897 * 120.05534 * 179.68455 * 20 18 17 22 22 C 1.42905 * 117.00168 * 180.02562 * 21 20 18 23 23 C 1.38124 * 119.97517 * 272.44822 * 15 14 4 24 24 H 1.08004 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99894 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00317 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46859 * 3.00833 * 3 2 1 28 28 H 1.08998 * 109.47032 * 243.00259 * 3 2 1 29 29 H 1.08998 * 109.47591 * 186.04777 * 5 4 3 30 30 H 1.09006 * 109.46987 * 306.05034 * 5 4 3 31 31 H 0.97003 * 119.99612 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47058 * 168.00709 * 14 4 3 33 33 H 1.08999 * 109.47166 * 48.01189 * 14 4 3 34 34 H 1.07999 * 119.94120 * 0.02562 * 16 15 14 35 35 H 1.08002 * 119.97183 * 179.70206 * 17 16 15 36 36 H 1.08994 * 109.47849 * 270.32452 * 19 18 17 37 37 H 1.09002 * 109.46930 * 30.32401 * 19 18 17 38 38 H 1.09000 * 109.47152 * 150.32074 * 19 18 17 39 39 H 1.09006 * 109.46366 * 299.99747 * 22 21 20 40 40 H 1.09000 * 109.47349 * 59.99364 * 22 21 20 41 41 H 1.08998 * 109.47486 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.02568 * 359.97169 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3520 1.1615 5 6 3.9788 0.2949 1.0835 6 6 4.8911 0.5609 -0.0861 7 1 4.7315 1.4287 -0.7089 8 6 5.9300 -0.3030 -0.3604 9 7 6.7264 -0.0706 -1.3808 10 14 6.2063 -1.8035 0.7173 11 1 5.4368 -2.9516 0.1741 12 1 7.6524 -2.1409 0.7348 13 1 5.7495 -1.5111 2.0997 14 6 2.2040 1.2619 2.4168 15 6 1.4607 2.5521 2.6486 16 6 0.1602 2.6907 2.1990 17 6 -0.5224 3.8749 2.4050 18 6 0.0895 4.9195 3.0710 19 6 -0.6572 6.2083 3.3002 20 6 1.3939 4.7833 3.5225 21 8 2.0001 5.8116 4.1722 22 6 3.3445 5.6008 4.6084 23 6 2.0789 3.5956 3.3095 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6492 1.3865 -0.9157 29 1 4.5622 0.2833 2.0041 30 1 3.4901 -0.6704 0.9509 31 1 7.4576 -0.6782 -1.5736 32 1 2.8913 1.0849 3.2441 33 1 1.4922 0.4389 2.3534 34 1 -0.3214 1.8736 1.6824 35 1 -1.5363 3.9823 2.0486 36 1 -0.4891 6.8803 2.4587 37 1 -1.7231 5.9994 3.3910 38 1 -0.2995 6.6774 4.2168 39 1 3.3741 4.7590 5.3004 40 1 3.9766 5.3853 3.7469 41 1 3.7084 6.4972 5.1105 42 1 3.0945 3.4870 3.6604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292884107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = 11.798682 kcal Electronic energy + Delta-G solvation = -21379.701428 eV Core-core repulsion = 18325.739289 eV Total energy + Delta-G solvation = -3053.962139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18760 -38.15626 -36.78037 -33.29592 -32.96223 -31.85342 -29.97625 -28.70928 -27.53042 -27.02268 -25.32614 -23.07188 -22.07192 -21.15232 -20.61222 -18.90118 -17.37824 -16.72461 -16.24747 -15.70967 -15.36716 -15.16556 -14.79551 -14.41342 -14.01480 -13.94516 -13.59176 -13.45865 -13.03972 -12.67118 -12.50228 -12.27239 -11.98327 -11.93255 -11.65014 -11.43877 -11.18760 -11.04715 -10.89575 -10.78544 -10.70641 -10.67184 -10.12378 -9.85390 -9.40971 -8.95104 -8.61053 -8.51343 -7.93190 -7.39857 -6.07492 -4.04740 1.49303 1.62409 2.63556 3.24816 3.33293 3.34312 3.36097 3.87807 4.38948 4.84538 4.92057 5.00505 5.12026 5.21042 5.23753 5.27292 5.31879 5.36199 5.43609 5.55570 5.58842 5.68668 5.72917 5.78034 5.83921 5.91725 6.02316 6.05695 6.30963 6.31384 6.48926 6.58247 6.61894 6.77561 6.86993 6.91690 6.96529 7.01777 7.12715 7.50684 7.57754 7.85666 8.00208 8.62655 9.01364 9.53991 11.05641 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.004957 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.002969 B = 5647.710688 C = 6566.738628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C 0.082 3.918 4 N -0.512 5.512 5 C 0.159 3.841 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.082 3.918 15 C -0.026 4.026 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.128 4.128 19 C -0.100 4.100 20 C 0.122 3.878 21 O -0.319 6.319 22 C 0.027 3.973 23 C -0.181 4.181 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.027 0.973 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 7.613 10.536 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.180 4.180 3 C -0.045 4.045 4 N -0.234 5.234 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.046 4.046 15 C -0.026 4.026 16 C -0.170 4.170 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.157 4.157 20 C 0.077 3.923 21 O -0.233 6.233 22 C -0.069 4.069 23 C -0.201 4.201 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.045 0.955 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.017 8.189 10.495 18.618 hybrid contribution 0.198 -1.988 0.433 2.044 sum -12.819 6.202 10.928 17.950 Atomic orbital electron populations 1.23732 0.95942 1.00921 1.04484 1.23882 0.96284 1.01365 0.96512 1.21380 0.94487 0.92554 0.96128 1.62256 1.12614 1.49284 0.99219 1.20257 0.90104 0.87995 0.98357 1.21006 1.11235 1.11037 1.11274 0.90110 1.24876 0.95718 0.97597 0.95015 1.69893 1.17889 1.37809 1.28268 0.86901 0.77586 0.83793 0.81685 1.20361 1.21151 1.19228 1.21120 0.96164 0.92670 0.94642 1.19660 0.93248 0.95364 0.94365 1.21092 0.94941 0.98239 1.02718 1.20770 0.99461 0.92460 0.97856 1.19149 0.92470 0.97763 1.03509 1.20546 0.98791 0.94204 1.02153 1.18789 0.92208 0.87142 0.94190 1.86000 1.28544 1.37690 1.71046 1.23046 0.81235 1.02810 0.99761 1.21105 1.00621 0.93182 1.05147 0.88893 0.89356 0.87319 0.91562 0.88530 0.95500 0.99300 0.92665 0.90771 0.93975 0.85881 0.85871 0.91747 0.92103 0.91544 0.92799 0.92169 0.88583 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.02 13.43 29.01 0.39 -2.63 16 2 C -0.16 -2.76 7.43 -36.02 -0.27 -3.02 16 3 C 0.08 1.56 5.39 -4.97 -0.03 1.54 16 4 N -0.51 -10.47 4.65 -238.96 -1.11 -11.58 16 5 C 0.16 3.73 3.62 -4.97 -0.02 3.72 16 6 C -0.51 -14.08 9.02 -34.44 -0.31 -14.39 16 7 H 0.08 2.46 7.36 -52.49 -0.39 2.07 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 10 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.08 1.41 4.98 -4.98 -0.02 1.39 16 15 C -0.03 -0.40 4.98 -104.65 -0.52 -0.93 16 16 C -0.15 -2.15 8.26 -39.56 -0.33 -2.47 16 17 C -0.09 -1.12 9.70 -39.61 -0.38 -1.51 16 18 C -0.13 -1.72 5.89 -104.47 -0.62 -2.33 16 19 C -0.10 -1.07 9.79 36.01 0.35 -0.72 16 20 C 0.12 1.77 6.66 -39.22 -0.26 1.51 16 21 O -0.32 -4.29 9.54 -19.42 -0.19 -4.47 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 C -0.18 -2.79 8.70 -39.43 -0.34 -3.13 16 24 H 0.09 1.20 6.54 -52.48 -0.34 0.86 16 25 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 26 H 0.11 2.03 6.81 -52.49 -0.36 1.67 16 27 H 0.07 1.16 6.08 -51.93 -0.32 0.85 16 28 H 0.10 2.08 6.78 -51.93 -0.35 1.73 16 29 H 0.03 0.64 6.92 -51.93 -0.36 0.29 16 30 H -0.01 -0.25 5.74 -51.93 -0.30 -0.54 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.25 7.77 -51.93 -0.40 0.85 16 33 H 0.04 0.70 6.66 -51.93 -0.35 0.35 16 34 H 0.12 1.63 5.70 -52.49 -0.30 1.33 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 39 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.13 1.89 6.30 -52.49 -0.33 1.56 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -30.44 333.80 -7.88 -38.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.26 Total: 2.51 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.46 Total: -19.84 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.34 Total: -38.05 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.44 -7.88 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292884107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.119 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds