Wall clock time and date at job start Mon Mar 30 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00040 * 2 1 4 4 N 1.46898 * 109.47052 * 123.00219 * 3 2 1 5 5 C 1.46904 * 110.99976 * 63.22971 * 4 3 2 6 6 C 1.50699 * 109.47170 * 66.04460 * 5 4 3 7 7 H 1.07999 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00009 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99823 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00283 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47146 * 89.99950 * 10 8 6 12 12 H 1.48499 * 109.47423 * 210.00008 * 10 8 6 13 13 H 1.48503 * 109.47003 * 330.00167 * 10 8 6 14 14 C 1.46901 * 111.00019 * 299.27670 * 4 3 2 15 15 C 1.50693 * 109.47300 * 288.00804 * 14 4 3 16 16 C 1.38292 * 119.97209 * 92.42012 * 15 14 4 17 17 C 1.38238 * 120.11318 * 180.27538 * 16 15 14 18 18 C 1.38170 * 120.05455 * 359.45201 * 17 16 15 19 19 C 1.50699 * 120.02955 * 180.24640 * 18 17 16 20 20 C 1.38708 * 119.94284 * 0.57434 * 18 17 16 21 21 O 1.35897 * 120.05534 * 179.68455 * 20 18 17 22 22 C 1.42905 * 117.00168 * 180.02562 * 21 20 18 23 23 C 1.38124 * 119.97517 * 272.44822 * 15 14 4 24 24 H 1.08004 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99894 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00317 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46859 * 3.00833 * 3 2 1 28 28 H 1.08998 * 109.47032 * 243.00259 * 3 2 1 29 29 H 1.08998 * 109.47591 * 186.04777 * 5 4 3 30 30 H 1.09006 * 109.46987 * 306.05034 * 5 4 3 31 31 H 0.97003 * 119.99612 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47058 * 168.00709 * 14 4 3 33 33 H 1.08999 * 109.47166 * 48.01189 * 14 4 3 34 34 H 1.07999 * 119.94120 * 0.02562 * 16 15 14 35 35 H 1.08002 * 119.97183 * 179.70206 * 17 16 15 36 36 H 1.08994 * 109.47849 * 270.32452 * 19 18 17 37 37 H 1.09002 * 109.46930 * 30.32401 * 19 18 17 38 38 H 1.09000 * 109.47152 * 150.32074 * 19 18 17 39 39 H 1.09006 * 109.46366 * 299.99747 * 22 21 20 40 40 H 1.09000 * 109.47349 * 59.99364 * 22 21 20 41 41 H 1.08998 * 109.47486 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.02568 * 359.97169 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3520 1.1615 5 6 3.9788 0.2949 1.0835 6 6 4.8911 0.5609 -0.0861 7 1 4.7315 1.4287 -0.7089 8 6 5.9300 -0.3030 -0.3604 9 7 6.7264 -0.0706 -1.3808 10 14 6.2063 -1.8035 0.7173 11 1 5.4368 -2.9516 0.1741 12 1 7.6524 -2.1409 0.7348 13 1 5.7495 -1.5111 2.0997 14 6 2.2040 1.2619 2.4168 15 6 1.4607 2.5521 2.6486 16 6 0.1602 2.6907 2.1990 17 6 -0.5224 3.8749 2.4050 18 6 0.0895 4.9195 3.0710 19 6 -0.6572 6.2083 3.3002 20 6 1.3939 4.7833 3.5225 21 8 2.0001 5.8116 4.1722 22 6 3.3445 5.6008 4.6084 23 6 2.0789 3.5956 3.3095 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6492 1.3865 -0.9157 29 1 4.5622 0.2833 2.0041 30 1 3.4901 -0.6704 0.9509 31 1 7.4576 -0.6782 -1.5736 32 1 2.8913 1.0849 3.2441 33 1 1.4922 0.4389 2.3534 34 1 -0.3214 1.8736 1.6824 35 1 -1.5363 3.9823 2.0486 36 1 -0.4891 6.8803 2.4587 37 1 -1.7231 5.9994 3.3910 38 1 -0.2995 6.6774 4.2168 39 1 3.3741 4.7590 5.3004 40 1 3.9766 5.3853 3.7469 41 1 3.7084 6.4972 5.1105 42 1 3.0945 3.4870 3.6604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292884107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:09 Heat of formation + Delta-G solvation = -6.987837 kcal Electronic energy + Delta-G solvation = -21380.516073 eV Core-core repulsion = 18325.739289 eV Total energy + Delta-G solvation = -3054.776784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24994 -39.47799 -37.98095 -34.91593 -34.42231 -33.40210 -31.02604 -30.27440 -28.66452 -28.30203 -26.67906 -24.60804 -23.10989 -22.72348 -21.75993 -20.36940 -18.95635 -18.28860 -17.37516 -16.78263 -16.54682 -16.54567 -16.40669 -15.97329 -15.50775 -15.09455 -14.69167 -14.55437 -14.37506 -14.30993 -13.79862 -13.49881 -13.35428 -13.01261 -12.87432 -12.73792 -12.56423 -12.51557 -12.33554 -12.15017 -11.92637 -11.90604 -11.75657 -11.62927 -11.39867 -10.79537 -10.27397 -9.61653 -9.08775 -8.88962 -8.27990 -6.30657 0.39638 0.54673 1.32690 1.34630 1.38587 1.45296 2.33467 2.42111 2.75948 3.05563 3.47665 3.77820 3.91633 4.06207 4.17252 4.21882 4.28572 4.33011 4.37874 4.39408 4.53943 4.61960 4.68748 4.73223 4.75564 4.82516 4.89773 4.90516 4.97553 5.00993 5.09107 5.19426 5.35538 5.44310 5.52389 5.59465 5.72349 5.74808 5.81325 5.92758 5.99969 6.37063 6.47790 6.65054 6.75184 7.32454 8.88827 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.004957 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.002969 B = 5647.710688 C = 6566.738628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.195 4.195 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.171 3.829 6 C -0.511 4.511 7 H 0.036 0.964 8 C 0.010 3.990 9 N -0.949 5.949 10 Si 0.944 3.056 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.249 1.249 14 C 0.089 3.911 15 C -0.045 4.045 16 C -0.154 4.154 17 C -0.083 4.083 18 C -0.134 4.134 19 C -0.098 4.098 20 C 0.109 3.891 21 O -0.327 6.327 22 C 0.022 3.978 23 C -0.197 4.197 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.026 0.974 30 H -0.005 1.005 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.124 0.876 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.088 7.315 12.196 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.215 4.215 3 C -0.036 4.036 4 N -0.252 5.252 5 C 0.044 3.956 6 C -0.549 4.549 7 H 0.054 0.946 8 C -0.187 4.187 9 N -0.590 5.590 10 Si 0.767 3.233 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.173 1.173 14 C -0.039 4.039 15 C -0.045 4.045 16 C -0.173 4.173 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.154 4.154 20 C 0.064 3.936 21 O -0.241 6.241 22 C -0.073 4.073 23 C -0.216 4.216 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.142 0.858 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.725 7.906 12.168 21.397 hybrid contribution 0.940 -1.745 -0.118 1.986 sum -14.785 6.161 12.049 20.043 Atomic orbital electron populations 1.24006 0.94608 1.02911 0.99243 1.23533 0.97309 0.99330 1.01330 1.21175 0.94036 0.94513 0.93854 1.62117 1.13583 1.48211 1.01269 1.19968 0.90350 0.89220 0.96026 1.21217 1.12193 1.09461 1.12037 0.94619 1.25792 0.95323 1.01148 0.96461 1.70054 1.18890 1.39527 1.30504 0.85765 0.77649 0.79442 0.80397 1.19268 1.20778 1.17286 1.21069 0.96058 0.94109 0.92627 1.19597 0.94173 0.94812 0.95944 1.21243 0.94304 0.99212 1.02530 1.21132 1.00688 0.91465 0.96819 1.19602 0.92184 0.99050 1.02653 1.20587 0.99815 0.92857 1.02175 1.19018 0.92954 0.87075 0.94595 1.85988 1.29673 1.37493 1.70937 1.23240 0.79926 1.04547 0.99558 1.21163 1.00721 0.93847 1.05859 0.86946 0.87025 0.89234 0.90017 0.92703 0.95626 0.98702 0.92499 0.91020 0.93015 0.84789 0.82627 0.91261 0.89780 0.91810 0.92212 0.93319 0.85812 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 13.43 67.78 0.91 -3.36 16 2 C -0.20 -6.53 7.43 25.65 0.19 -6.34 16 3 C 0.09 3.55 5.39 85.56 0.46 4.01 16 4 N -0.53 -22.07 4.65 -909.93 -4.23 -26.30 16 5 C 0.17 8.19 3.62 85.56 0.31 8.50 16 6 C -0.51 -29.64 9.02 25.60 0.23 -29.41 16 7 H 0.04 2.33 7.36 -2.91 -0.02 2.31 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 10 Si 0.94 44.02 27.47 68.60 1.88 45.91 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 14 C 0.09 3.01 4.98 85.55 0.43 3.43 16 15 C -0.04 -1.37 4.98 -19.88 -0.10 -1.47 16 16 C -0.15 -4.00 8.26 22.28 0.18 -3.82 16 17 C -0.08 -1.88 9.70 22.25 0.22 -1.66 16 18 C -0.13 -3.29 5.89 -19.77 -0.12 -3.41 16 19 C -0.10 -1.82 9.79 71.24 0.70 -1.12 16 20 C 0.11 3.06 6.66 22.51 0.15 3.21 16 21 O -0.33 -8.50 9.54 -92.39 -0.88 -9.38 16 22 C 0.02 0.44 9.81 113.37 1.11 1.56 16 23 C -0.20 -6.00 8.70 22.37 0.19 -5.81 16 24 H 0.11 2.41 6.54 -2.91 -0.02 2.39 16 25 H 0.11 2.35 8.06 -2.91 -0.02 2.33 16 26 H 0.09 3.33 6.81 -2.91 -0.02 3.31 16 27 H 0.08 2.83 6.08 -2.39 -0.01 2.82 16 28 H 0.05 2.53 6.78 -2.39 -0.02 2.51 16 29 H 0.03 1.23 6.92 -2.39 -0.02 1.21 16 30 H 0.00 -0.22 5.74 -2.38 -0.01 -0.23 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.07 2.41 7.77 -2.39 -0.02 2.39 16 33 H 0.05 1.64 6.66 -2.39 -0.02 1.63 16 34 H 0.13 3.09 5.70 -2.91 -0.02 3.07 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 38 H 0.06 1.22 7.53 -2.39 -0.02 1.21 16 39 H 0.06 1.13 7.66 -2.38 -0.02 1.11 16 40 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 41 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.12 3.73 6.30 -2.91 -0.02 3.71 16 Total: -1.00 -68.56 333.80 3.35 -65.21 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.94 Total: 18.55 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 5.33 Total: -34.63 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -3.93 Total: -85.65 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.88 Total: -9.38 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -68.56 3.35 -65.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292884107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.227 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds