Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50709 * 109.46753 * 2 1 4 4 C 1.31002 * 119.99901 * 124.99533 * 3 2 1 5 5 C 1.50699 * 119.99890 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47127 * 125.00280 * 5 4 3 7 7 C 1.46900 * 110.99629 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47323 * 324.99816 * 7 6 5 9 9 C 1.53001 * 109.47100 * 85.00381 * 7 6 5 10 10 C 1.50698 * 109.46638 * 204.99862 * 7 6 5 11 11 C 1.38299 * 119.93478 * 319.72885 * 10 7 6 12 12 C 1.38097 * 120.07103 * 179.72930 * 11 10 7 13 13 C 1.38879 * 119.93258 * 0.54274 * 12 11 10 14 14 O 1.35743 * 120.07267 * 179.75239 * 13 12 11 15 15 C 1.34830 * 117.00206 * 174.44202 * 14 13 12 16 16 H 1.08002 * 120.00080 * 5.05400 * 15 14 13 17 17 C 1.38648 * 120.00210 * 185.05407 * 15 14 13 18 18 N 1.31567 * 120.00156 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00141 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47427 * 89.99796 * 19 17 15 21 21 H 1.48501 * 109.47390 * 210.00258 * 19 17 15 22 22 H 1.48500 * 109.46864 * 329.99802 * 19 17 15 23 23 C 1.38880 * 119.85848 * 359.72945 * 13 12 11 24 24 C 1.38098 * 119.93174 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47577 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.00544 * 1 2 3 28 28 H 1.08991 * 109.47192 * 239.99940 * 2 1 3 29 29 H 1.09001 * 109.47005 * 119.99456 * 2 1 3 30 30 H 1.08000 * 119.99820 * 305.00088 * 3 2 1 31 31 H 1.08001 * 119.99721 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.46914 * 5.00218 * 5 4 3 33 33 H 1.09005 * 109.46713 * 245.00162 * 5 4 3 34 34 H 1.00900 * 111.00074 * 303.95171 * 6 5 4 35 35 H 1.08996 * 109.47494 * 59.99540 * 9 7 6 36 36 H 1.08999 * 109.47010 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.46841 * 299.99421 * 9 7 6 38 38 H 1.08002 * 119.96647 * 359.97438 * 11 10 7 39 39 H 1.08004 * 120.03644 * 180.27728 * 12 11 10 40 40 H 0.96997 * 119.99733 * 180.02562 * 18 17 15 41 41 H 1.08006 * 120.03861 * 179.97438 * 23 13 12 42 42 H 1.08003 * 119.96943 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8641 1.8216 0.9294 5 6 3.3667 3.2423 0.9291 6 7 3.0833 3.8623 2.2303 7 6 3.5611 5.2510 2.2669 8 1 4.4803 5.3344 1.6872 9 6 2.4959 6.1727 1.6696 10 6 3.8293 5.6523 3.6945 11 6 2.9639 5.2549 4.6973 12 6 3.2100 5.6163 6.0072 13 6 4.3218 6.3893 6.3156 14 8 4.5637 6.7505 7.6016 15 6 5.7185 7.4015 7.8477 16 1 6.3635 7.6853 7.0292 17 6 6.0780 7.7066 9.1515 18 7 7.2046 8.3423 9.3916 19 14 4.9629 7.2152 10.5673 20 1 5.3370 5.8597 11.0446 21 1 5.1135 8.1900 11.6774 22 1 3.5516 7.2054 10.1053 23 6 5.1860 6.7916 5.3056 24 6 4.9371 6.4226 3.9983 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7064 2.1088 -0.7662 31 1 3.1895 1.1338 1.6958 32 1 2.8653 3.8049 0.1416 33 1 4.4421 3.2471 0.7508 34 1 2.0994 3.8123 2.4480 35 1 1.5767 6.0893 2.2493 36 1 2.8503 7.2031 1.6972 37 1 2.3019 5.8824 0.6370 38 1 2.0968 4.6578 4.4564 39 1 2.5362 5.3019 6.7906 40 1 7.4563 8.5555 10.3038 41 1 6.0513 7.3931 5.5420 42 1 5.6089 6.7348 3.2123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296442430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = 1.044903 kcal Electronic energy + Delta-G solvation = -20066.760033 eV Core-core repulsion = 17012.331575 eV Total energy + Delta-G solvation = -3054.428458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.30770 -37.90079 -36.54584 -35.19003 -32.46475 -32.04273 -30.26055 -29.48781 -28.03746 -25.46536 -25.17384 -22.61546 -22.36454 -21.69411 -20.11087 -19.66713 -17.78428 -17.25940 -16.15847 -15.33458 -15.03575 -14.79881 -14.52526 -14.15323 -13.84023 -13.76530 -13.66123 -13.41649 -12.99209 -12.97160 -12.66394 -12.43785 -12.24122 -12.19772 -12.14514 -11.77770 -11.47554 -11.30555 -11.11945 -11.05318 -10.68357 -10.55978 -10.50172 -10.10846 -9.34418 -9.27140 -8.82637 -8.39302 -8.18112 -7.23640 -6.38148 -4.04538 1.98040 2.19929 2.29276 3.24357 3.28211 3.42889 4.19666 4.26810 4.52418 4.65944 4.75044 4.90446 4.98132 5.04718 5.06937 5.13417 5.15818 5.28819 5.30699 5.39813 5.55932 5.61331 5.63410 5.66699 5.73090 5.75239 5.84825 5.90068 5.93366 6.12809 6.19648 6.39166 6.47892 6.56951 6.62966 6.81814 6.97607 7.16239 7.33677 7.40157 7.40597 7.66789 7.84454 8.08268 8.97545 9.61107 10.69704 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.002919 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330671 B = 9589.633659 C =10059.597948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.163 4.163 4 C -0.147 4.147 5 C 0.086 3.914 6 N -0.676 5.676 7 C 0.139 3.861 8 H 0.077 0.923 9 C -0.176 4.176 10 C -0.158 4.158 11 C -0.056 4.056 12 C -0.194 4.194 13 C 0.158 3.842 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.062 3.938 18 N -0.882 5.882 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.220 4.220 24 C -0.070 4.070 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.340 0.660 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -11.084 -17.963 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.182 4.182 4 C -0.165 4.165 5 C -0.042 4.042 6 N -0.307 5.307 7 C 0.029 3.971 8 H 0.095 0.905 9 C -0.235 4.235 10 C -0.159 4.159 11 C -0.074 4.074 12 C -0.213 4.213 13 C 0.106 3.894 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.141 4.141 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.239 4.239 24 C -0.089 4.089 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.225 -11.262 -17.279 23.021 hybrid contribution -0.802 0.402 0.069 0.900 sum -11.028 -10.860 -17.210 23.146 Atomic orbital electron populations 1.21713 0.95242 1.01572 1.02010 1.20626 0.96068 0.94315 1.02249 1.22875 0.98534 0.97391 0.99376 1.22898 0.97859 0.97033 0.98712 1.21037 1.00915 0.91773 0.90499 1.60574 1.23059 1.17495 1.29534 1.20227 0.97146 0.85861 0.93834 0.90498 1.22494 0.99926 1.01257 0.99805 1.19138 0.98231 1.04766 0.93785 1.20312 0.98062 0.97605 0.91440 1.20202 0.99485 1.04924 0.96676 1.19124 0.93401 0.92268 0.84563 1.83570 1.39666 1.66899 1.22376 1.20760 0.95769 1.34379 0.95466 0.87685 1.24465 0.96147 0.95838 0.97639 1.69653 1.21450 1.38926 1.21968 0.86178 0.81748 0.78459 0.80486 1.19913 1.20855 1.18391 1.21225 1.03029 1.07158 0.92503 1.20598 0.95849 0.96844 0.95563 0.92669 0.92519 0.92777 0.91376 0.91505 0.87716 0.86757 0.95187 0.90324 0.84185 0.92365 0.91753 0.93375 0.87210 0.86731 0.91126 0.85061 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.10 -0.68 6.38 -27.88 -0.18 -0.86 16 3 C -0.16 -1.33 9.12 -36.02 -0.33 -1.66 16 4 C -0.15 -1.37 9.38 -36.03 -0.34 -1.70 16 5 C 0.09 0.86 5.92 -4.98 -0.03 0.83 16 6 N -0.68 -7.99 5.70 -109.22 -0.62 -8.61 16 7 C 0.14 1.77 2.79 -68.87 -0.19 1.58 16 8 H 0.08 0.97 7.66 -51.93 -0.40 0.57 16 9 C -0.18 -1.95 9.14 37.16 0.34 -1.61 16 10 C -0.16 -2.60 4.96 -104.58 -0.52 -3.11 16 11 C -0.06 -0.95 9.31 -39.61 -0.37 -1.32 16 12 C -0.19 -3.90 9.99 -39.40 -0.39 -4.29 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.22 -5.89 8.59 0.07 0.00 -5.89 16 15 C -0.39 -11.08 9.95 30.88 0.31 -10.77 16 16 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -25.74 13.96 55.48 0.77 -24.96 16 19 Si 0.91 21.95 28.62 -169.99 -4.86 17.09 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 23 C -0.22 -4.80 9.17 -39.40 -0.36 -5.16 16 24 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 30 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 31 H 0.11 1.13 7.84 -52.49 -0.41 0.72 16 32 H 0.03 0.28 7.09 -51.93 -0.37 -0.09 16 33 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.34 3.75 7.81 -39.29 -0.31 3.44 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.46 7.45 -51.92 -0.39 0.07 16 38 H 0.11 1.59 7.25 -52.49 -0.38 1.21 16 39 H 0.11 2.17 8.06 -52.48 -0.42 1.74 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 3.01 5.64 -52.48 -0.30 2.72 16 42 H 0.11 1.67 8.03 -52.48 -0.42 1.25 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -29.32 349.09 -8.47 -37.79 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.58 Total: 4.53 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.43 Total: -25.21 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.15 Total: -33.57 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: 0.00 Total: -5.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.32 -8.47 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296442430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.834 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds