Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50709 * 109.46753 * 2 1 4 4 C 1.31002 * 119.99901 * 124.99533 * 3 2 1 5 5 C 1.50699 * 119.99890 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47127 * 125.00280 * 5 4 3 7 7 C 1.46900 * 110.99629 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47323 * 324.99816 * 7 6 5 9 9 C 1.53001 * 109.47100 * 85.00381 * 7 6 5 10 10 C 1.50698 * 109.46638 * 204.99862 * 7 6 5 11 11 C 1.38299 * 119.93478 * 319.72885 * 10 7 6 12 12 C 1.38097 * 120.07103 * 179.72930 * 11 10 7 13 13 C 1.38879 * 119.93258 * 0.54274 * 12 11 10 14 14 O 1.35743 * 120.07267 * 179.75239 * 13 12 11 15 15 C 1.34830 * 117.00206 * 174.44202 * 14 13 12 16 16 H 1.08002 * 120.00080 * 5.05400 * 15 14 13 17 17 C 1.38648 * 120.00210 * 185.05407 * 15 14 13 18 18 N 1.31567 * 120.00156 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00141 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47427 * 89.99796 * 19 17 15 21 21 H 1.48501 * 109.47390 * 210.00258 * 19 17 15 22 22 H 1.48500 * 109.46864 * 329.99802 * 19 17 15 23 23 C 1.38880 * 119.85848 * 359.72945 * 13 12 11 24 24 C 1.38098 * 119.93174 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47577 * 300.00150 * 1 2 3 27 27 H 1.09001 * 109.47005 * 60.00544 * 1 2 3 28 28 H 1.08991 * 109.47192 * 239.99940 * 2 1 3 29 29 H 1.09001 * 109.47005 * 119.99456 * 2 1 3 30 30 H 1.08000 * 119.99820 * 305.00088 * 3 2 1 31 31 H 1.08001 * 119.99721 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.46914 * 5.00218 * 5 4 3 33 33 H 1.09005 * 109.46713 * 245.00162 * 5 4 3 34 34 H 1.00900 * 111.00074 * 303.95171 * 6 5 4 35 35 H 1.08996 * 109.47494 * 59.99540 * 9 7 6 36 36 H 1.08999 * 109.47010 * 179.97438 * 9 7 6 37 37 H 1.09007 * 109.46841 * 299.99421 * 9 7 6 38 38 H 1.08002 * 119.96647 * 359.97438 * 11 10 7 39 39 H 1.08004 * 120.03644 * 180.27728 * 12 11 10 40 40 H 0.96997 * 119.99733 * 180.02562 * 18 17 15 41 41 H 1.08006 * 120.03861 * 179.97438 * 23 13 12 42 42 H 1.08003 * 119.96943 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8641 1.8216 0.9294 5 6 3.3667 3.2423 0.9291 6 7 3.0833 3.8623 2.2303 7 6 3.5611 5.2510 2.2669 8 1 4.4803 5.3344 1.6872 9 6 2.4959 6.1727 1.6696 10 6 3.8293 5.6523 3.6945 11 6 2.9639 5.2549 4.6973 12 6 3.2100 5.6163 6.0072 13 6 4.3218 6.3893 6.3156 14 8 4.5637 6.7505 7.6016 15 6 5.7185 7.4015 7.8477 16 1 6.3635 7.6853 7.0292 17 6 6.0780 7.7066 9.1515 18 7 7.2046 8.3423 9.3916 19 14 4.9629 7.2152 10.5673 20 1 5.3370 5.8597 11.0446 21 1 5.1135 8.1900 11.6774 22 1 3.5516 7.2054 10.1053 23 6 5.1860 6.7916 5.3056 24 6 4.9371 6.4226 3.9983 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7064 2.1088 -0.7662 31 1 3.1895 1.1338 1.6958 32 1 2.8653 3.8049 0.1416 33 1 4.4421 3.2471 0.7508 34 1 2.0994 3.8123 2.4480 35 1 1.5767 6.0893 2.2493 36 1 2.8503 7.2031 1.6972 37 1 2.3019 5.8824 0.6370 38 1 2.0968 4.6578 4.4564 39 1 2.5362 5.3019 6.7906 40 1 7.4563 8.5555 10.3038 41 1 6.0513 7.3931 5.5420 42 1 5.6089 6.7348 3.2123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296442430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -15.298173 kcal Electronic energy + Delta-G solvation = -20067.468722 eV Core-core repulsion = 17012.331575 eV Total energy + Delta-G solvation = -3055.137147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93662 -39.23880 -37.65657 -36.15631 -34.43882 -33.01887 -31.81696 -30.51844 -29.29133 -27.24564 -26.09526 -23.90681 -23.63115 -22.70041 -21.45046 -20.42788 -19.69607 -19.08199 -17.21781 -16.72268 -16.12141 -16.04850 -15.67294 -15.51790 -15.32547 -15.27715 -14.81115 -14.40112 -14.19089 -14.06510 -14.05084 -13.90383 -13.71020 -13.25257 -13.01299 -12.78922 -12.63114 -12.56412 -12.37147 -12.13287 -12.05312 -11.84412 -11.79326 -11.47034 -11.23977 -10.87998 -9.93358 -9.75874 -9.30152 -8.91335 -8.49039 -6.21202 0.61238 0.69439 1.31321 1.32763 1.36086 1.52313 2.28882 2.77592 3.06390 3.18704 3.39504 3.92605 3.99355 4.09189 4.15887 4.18976 4.35665 4.36764 4.40126 4.52621 4.57438 4.62220 4.66820 4.72275 4.83630 4.91464 4.92757 5.01499 5.05824 5.11594 5.21366 5.26458 5.28714 5.39089 5.44074 5.59180 5.76462 5.81507 5.83177 5.92382 5.94241 6.20197 6.30020 6.55845 6.85579 7.61441 8.62752 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029993 B = 0.002919 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.330671 B = 9589.633659 C =10059.597948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.162 4.162 5 C 0.091 3.909 6 N -0.687 5.687 7 C 0.142 3.858 8 H 0.084 0.916 9 C -0.170 4.170 10 C -0.133 4.133 11 C -0.049 4.049 12 C -0.193 4.193 13 C 0.115 3.885 14 O -0.247 6.247 15 C -0.398 4.398 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.236 4.236 24 C -0.073 4.073 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.346 0.654 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.284 0.716 41 H 0.106 0.894 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -12.773 -20.250 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.168 4.168 4 C -0.181 4.181 5 C -0.037 4.037 6 N -0.318 5.318 7 C 0.032 3.968 8 H 0.102 0.898 9 C -0.229 4.229 10 C -0.134 4.134 11 C -0.067 4.067 12 C -0.212 4.212 13 C 0.067 3.933 14 O -0.155 6.155 15 C -0.474 4.474 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.187 1.187 23 C -0.256 4.256 24 C -0.092 4.092 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.658 -12.970 -19.613 26.704 hybrid contribution -0.150 0.779 0.394 0.885 sum -12.808 -12.191 -19.220 26.116 Atomic orbital electron populations 1.21703 0.94640 1.02114 1.01966 1.20680 0.96564 0.93823 1.02515 1.23035 0.97191 0.97906 0.98699 1.22781 0.99167 0.96725 0.99420 1.21003 1.00829 0.92049 0.89795 1.60471 1.23633 1.16580 1.31142 1.20188 0.98468 0.87114 0.91006 0.89756 1.22421 0.99074 1.00394 1.01024 1.19693 0.96153 1.01487 0.96076 1.20727 0.99022 0.96900 0.90101 1.20520 0.98333 1.03876 0.98503 1.19663 0.95375 0.94408 0.83896 1.83509 1.39061 1.68692 1.24273 1.20703 0.96493 1.34950 0.95287 0.90274 1.25295 0.97676 0.95988 1.00080 1.69737 1.23198 1.40814 1.22851 0.85199 0.79310 0.78637 0.77442 1.19138 1.19140 1.18740 1.21237 1.02446 1.07682 0.94187 1.20898 0.97033 0.96732 0.94518 0.91938 0.93131 0.92212 0.90467 0.91935 0.86761 0.87761 0.93775 0.90849 0.83460 0.92109 0.92237 0.91193 0.83599 0.85650 0.90624 0.87602 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.10 -1.16 6.38 29.85 0.19 -0.97 16 3 C -0.15 -2.00 9.12 25.65 0.23 -1.76 16 4 C -0.16 -2.60 9.38 25.64 0.24 -2.36 16 5 C 0.09 1.52 5.92 85.56 0.51 2.02 16 6 N -0.69 -13.69 5.70 -499.46 -2.85 -16.54 16 7 C 0.14 3.10 2.79 44.17 0.12 3.22 16 8 H 0.08 1.79 7.66 -2.39 -0.02 1.77 16 9 C -0.17 -3.07 9.14 71.98 0.66 -2.41 16 10 C -0.13 -4.02 4.96 -19.83 -0.10 -4.11 16 11 C -0.05 -1.55 9.31 22.25 0.21 -1.35 16 12 C -0.19 -7.61 9.99 22.39 0.22 -7.39 16 13 C 0.12 5.56 6.65 22.58 0.15 5.71 16 14 O -0.25 -13.83 8.59 -22.66 -0.19 -14.02 16 15 C -0.40 -24.04 9.95 67.92 0.68 -23.36 16 16 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 17 C 0.01 0.45 5.49 84.83 0.47 0.91 16 18 N -0.92 -56.26 13.96 21.61 0.30 -55.96 16 19 Si 0.97 46.41 28.62 68.60 1.96 48.37 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 23 C -0.24 -10.69 9.17 22.39 0.21 -10.48 16 24 C -0.07 -2.59 9.66 22.25 0.21 -2.38 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 30 H 0.11 1.33 7.84 -2.91 -0.02 1.30 16 31 H 0.10 1.88 7.84 -2.91 -0.02 1.86 16 32 H 0.04 0.62 7.09 -2.39 -0.02 0.61 16 33 H 0.07 1.30 8.06 -2.38 -0.02 1.28 16 34 H 0.35 6.18 7.81 -89.69 -0.70 5.48 16 35 H 0.06 1.08 8.13 -2.39 -0.02 1.07 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.00 7.45 -2.38 -0.02 0.99 16 38 H 0.15 3.58 7.25 -2.91 -0.02 3.56 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 42 H 0.13 3.94 8.03 -2.91 -0.02 3.92 16 Total: -1.00 -66.40 349.09 4.23 -62.17 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.30 Total: 21.52 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 4.71 Total: -45.54 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -2.54 Total: -72.50 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.19 Total: -14.02 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.96 Total: 48.37 kcal Total: -66.40 4.23 -62.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296442430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.876 kcal (2) G-P(sol) polarization free energy of solvation -66.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds