Wall clock time and date at job start Mon Mar 30 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47152 * 2 1 4 4 C 1.30999 * 119.99747 * 125.00135 * 3 2 1 5 5 C 1.50702 * 120.00324 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47306 * 124.99956 * 5 4 3 7 7 C 1.46905 * 111.00287 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.46539 * 34.99556 * 7 6 5 9 9 C 1.53000 * 109.46687 * 275.00151 * 7 6 5 10 10 C 1.50691 * 109.47608 * 154.99811 * 7 6 5 11 11 C 1.38302 * 119.93062 * 39.72427 * 10 7 6 12 12 C 1.38105 * 120.07076 * 179.72631 * 11 10 7 13 13 C 1.38879 * 119.92842 * 0.54993 * 12 11 10 14 14 O 1.35740 * 120.07020 * 179.75129 * 13 12 11 15 15 C 1.34830 * 117.00242 * 174.44312 * 14 13 12 16 16 H 1.07997 * 120.00038 * 5.05058 * 15 14 13 17 17 C 1.38658 * 119.99941 * 185.05217 * 15 14 13 18 18 N 1.31551 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99709 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47372 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47380 * 120.00251 * 19 17 15 22 22 H 1.48509 * 109.46924 * 240.00090 * 19 17 15 23 23 C 1.38878 * 119.85984 * 359.72503 * 13 12 11 24 24 C 1.38104 * 119.93578 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47502 * 59.99480 * 1 2 3 26 26 H 1.09002 * 109.47753 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46978 * 299.99917 * 1 2 3 28 28 H 1.09002 * 109.46978 * 240.00083 * 2 1 3 29 29 H 1.08999 * 109.47065 * 120.00591 * 2 1 3 30 30 H 1.07994 * 120.00666 * 305.00413 * 3 2 1 31 31 H 1.08004 * 120.00280 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.46624 * 4.99946 * 5 4 3 33 33 H 1.08999 * 109.47090 * 245.00063 * 5 4 3 34 34 H 1.00901 * 111.00243 * 303.95597 * 6 5 4 35 35 H 1.08996 * 109.46838 * 299.99032 * 9 7 6 36 36 H 1.08999 * 109.47100 * 60.00196 * 9 7 6 37 37 H 1.09005 * 109.46826 * 179.97438 * 9 7 6 38 38 H 1.08001 * 119.96703 * 0.02562 * 11 10 7 39 39 H 1.07996 * 120.03520 * 180.27736 * 12 11 10 40 40 H 0.96999 * 120.00499 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.03162 * 179.97438 * 23 13 12 42 42 H 1.07993 * 119.96794 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8213 0.9293 5 6 3.3661 3.2423 0.9298 6 7 3.0828 3.8613 2.2314 7 6 3.5588 5.2506 2.2685 8 1 3.4328 5.7042 1.2853 9 6 5.0392 5.2723 2.6542 10 6 2.7632 6.0273 3.2857 11 6 2.4181 5.4377 4.4882 12 6 1.6939 6.1488 5.4249 13 6 1.3023 7.4533 5.1535 14 8 0.5861 8.1530 6.0699 15 6 0.3376 9.4490 5.7929 16 1 0.6326 9.8638 4.8404 17 6 -0.2965 10.2492 6.7311 18 7 -0.6554 9.7441 7.8915 19 14 -0.6401 12.0448 6.3475 20 1 -0.1398 12.3648 4.9864 21 1 -2.1029 12.2931 6.4088 22 1 0.0500 12.9044 7.3428 23 6 1.6456 8.0405 3.9427 24 6 2.3743 7.3260 3.0123 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7066 2.1088 -0.7660 31 1 3.1897 1.1335 1.6957 32 1 2.8641 3.8052 0.1427 33 1 4.4414 3.2478 0.7512 34 1 2.0989 3.8106 2.4495 35 1 5.1651 4.8188 3.6373 36 1 5.6146 4.7106 1.9184 37 1 5.3925 6.3032 2.6813 38 1 2.7193 4.4218 4.6971 39 1 1.4285 5.6893 6.3655 40 1 -1.0987 10.3040 8.5480 41 1 1.3422 9.0547 3.7286 42 1 2.6419 7.7823 2.0707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296442434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:15 Heat of formation + Delta-G solvation = -2.031028 kcal Electronic energy + Delta-G solvation = -20086.146519 eV Core-core repulsion = 17031.584678 eV Total energy + Delta-G solvation = -3054.561841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.22637 -37.73610 -36.45379 -35.02798 -32.44357 -31.89605 -30.21034 -29.42178 -27.92389 -25.53548 -25.23691 -22.60081 -22.18319 -21.48093 -20.07425 -19.57791 -17.92984 -17.05606 -16.10416 -15.33083 -15.02272 -14.73778 -14.50273 -14.08810 -13.94584 -13.78379 -13.57578 -13.25362 -13.00400 -12.79668 -12.56106 -12.33465 -12.12771 -12.05975 -11.81100 -11.67253 -11.36804 -11.24153 -11.19180 -10.92629 -10.66068 -10.61122 -10.42258 -10.30893 -9.33380 -9.20640 -8.83354 -8.37128 -8.16390 -7.17449 -6.45519 -4.04334 2.03774 2.23255 2.31475 3.11562 3.13197 3.18660 3.96152 4.27562 4.56961 4.67497 4.81068 5.03828 5.07626 5.11714 5.13736 5.24744 5.32041 5.36546 5.49302 5.57763 5.65774 5.67435 5.69981 5.75426 5.81220 5.89057 5.96930 6.00178 6.03508 6.24170 6.40007 6.48044 6.52653 6.62872 6.73863 6.87998 7.04863 7.06955 7.27521 7.42854 7.44367 7.56154 7.83853 7.99763 9.00298 9.70916 10.72647 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.003010 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.003350 B = 9301.547593 C = 9822.852141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.161 4.161 4 C -0.148 4.148 5 C 0.086 3.914 6 N -0.681 5.681 7 C 0.142 3.858 8 H 0.040 0.960 9 C -0.132 4.132 10 C -0.193 4.193 11 C -0.055 4.055 12 C -0.195 4.195 13 C 0.155 3.845 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.235 4.235 24 C -0.065 4.065 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.346 0.654 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -12.923 -14.218 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.181 4.181 4 C -0.166 4.166 5 C -0.043 4.043 6 N -0.313 5.313 7 C 0.033 3.967 8 H 0.058 0.942 9 C -0.190 4.190 10 C -0.194 4.194 11 C -0.074 4.074 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.254 4.254 24 C -0.084 4.084 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.512 -13.138 -13.482 19.919 hybrid contribution -0.833 1.464 -0.795 1.863 sum 5.679 -11.674 -14.277 19.297 Atomic orbital electron populations 1.21720 0.95161 1.01560 1.02190 1.20618 0.96155 0.94267 1.02121 1.22888 0.98308 0.97405 0.99450 1.22863 0.98138 0.96951 0.98663 1.21045 1.00753 0.91882 0.90589 1.60594 1.23711 1.17610 1.29377 1.20157 0.94447 0.86413 0.95705 0.94216 1.21772 0.94517 1.00969 1.01736 1.19263 1.07323 0.95605 0.97200 1.20501 0.96077 0.98576 0.92223 1.20259 1.06254 0.93731 1.01169 1.19421 0.89653 0.91779 0.88996 1.83978 1.60298 1.23465 1.40415 1.21371 1.39762 0.82926 1.02720 0.89056 1.25290 0.96475 1.00080 0.94699 1.70044 1.37383 1.36530 1.05796 0.85653 0.78453 0.80602 0.78743 1.19129 1.20141 1.20125 1.21119 1.07017 1.01807 0.95459 1.20582 0.96527 0.93529 0.97783 0.92733 0.92682 0.92390 0.91431 0.91576 0.87663 0.86859 0.95224 0.90490 0.83473 0.91953 0.93574 0.92663 0.86269 0.86566 0.92064 0.85634 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.09 -0.73 6.38 -27.89 -0.18 -0.91 16 3 C -0.16 -1.45 9.12 -36.03 -0.33 -1.78 16 4 C -0.15 -1.44 9.38 -36.02 -0.34 -1.78 16 5 C 0.09 0.91 5.92 -4.98 -0.03 0.88 16 6 N -0.68 -8.55 5.67 -109.22 -0.62 -9.17 16 7 C 0.14 1.94 2.82 -68.87 -0.19 1.75 16 8 H 0.04 0.53 7.66 -51.92 -0.40 0.14 16 9 C -0.13 -1.69 9.39 37.16 0.35 -1.34 16 10 C -0.19 -3.26 4.72 -104.58 -0.49 -3.75 16 11 C -0.06 -0.99 8.99 -39.61 -0.36 -1.35 16 12 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 14 O -0.18 -5.11 9.76 0.08 0.00 -5.11 16 15 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 19 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 24 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 30 H 0.11 0.92 7.84 -52.49 -0.41 0.51 16 31 H 0.11 1.11 7.84 -52.48 -0.41 0.70 16 32 H 0.03 0.32 7.71 -51.93 -0.40 -0.08 16 33 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 34 H 0.35 4.59 7.97 -39.29 -0.31 4.27 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.51 7.45 -51.93 -0.39 0.13 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.12 1.90 7.70 -52.49 -0.40 1.50 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 42 H 0.10 1.64 8.03 -52.49 -0.42 1.21 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -29.46 350.54 -8.60 -38.06 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.60 Total: 6.83 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.40 Total: -26.81 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.14 Total: -33.80 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: 0.00 Total: -5.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.46 -8.60 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296442434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.032 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds