Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47152 * 2 1 4 4 C 1.30999 * 119.99747 * 125.00135 * 3 2 1 5 5 C 1.50702 * 120.00324 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47306 * 124.99956 * 5 4 3 7 7 C 1.46905 * 111.00287 * 180.02562 * 6 5 4 8 8 H 1.09009 * 109.46539 * 34.99556 * 7 6 5 9 9 C 1.53000 * 109.46687 * 275.00151 * 7 6 5 10 10 C 1.50691 * 109.47608 * 154.99811 * 7 6 5 11 11 C 1.38302 * 119.93062 * 39.72427 * 10 7 6 12 12 C 1.38105 * 120.07076 * 179.72631 * 11 10 7 13 13 C 1.38879 * 119.92842 * 0.54993 * 12 11 10 14 14 O 1.35740 * 120.07020 * 179.75129 * 13 12 11 15 15 C 1.34830 * 117.00242 * 174.44312 * 14 13 12 16 16 H 1.07997 * 120.00038 * 5.05058 * 15 14 13 17 17 C 1.38658 * 119.99941 * 185.05217 * 15 14 13 18 18 N 1.31551 * 120.00305 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99709 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47372 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47380 * 120.00251 * 19 17 15 22 22 H 1.48509 * 109.46924 * 240.00090 * 19 17 15 23 23 C 1.38878 * 119.85984 * 359.72503 * 13 12 11 24 24 C 1.38104 * 119.93578 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47502 * 59.99480 * 1 2 3 26 26 H 1.09002 * 109.47753 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46978 * 299.99917 * 1 2 3 28 28 H 1.09002 * 109.46978 * 240.00083 * 2 1 3 29 29 H 1.08999 * 109.47065 * 120.00591 * 2 1 3 30 30 H 1.07994 * 120.00666 * 305.00413 * 3 2 1 31 31 H 1.08004 * 120.00280 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.46624 * 4.99946 * 5 4 3 33 33 H 1.08999 * 109.47090 * 245.00063 * 5 4 3 34 34 H 1.00901 * 111.00243 * 303.95597 * 6 5 4 35 35 H 1.08996 * 109.46838 * 299.99032 * 9 7 6 36 36 H 1.08999 * 109.47100 * 60.00196 * 9 7 6 37 37 H 1.09005 * 109.46826 * 179.97438 * 9 7 6 38 38 H 1.08001 * 119.96703 * 0.02562 * 11 10 7 39 39 H 1.07996 * 120.03520 * 180.27736 * 12 11 10 40 40 H 0.96999 * 120.00499 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.03162 * 179.97438 * 23 13 12 42 42 H 1.07993 * 119.96794 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8213 0.9293 5 6 3.3661 3.2423 0.9298 6 7 3.0828 3.8613 2.2314 7 6 3.5588 5.2506 2.2685 8 1 3.4328 5.7042 1.2853 9 6 5.0392 5.2723 2.6542 10 6 2.7632 6.0273 3.2857 11 6 2.4181 5.4377 4.4882 12 6 1.6939 6.1488 5.4249 13 6 1.3023 7.4533 5.1535 14 8 0.5861 8.1530 6.0699 15 6 0.3376 9.4490 5.7929 16 1 0.6326 9.8638 4.8404 17 6 -0.2965 10.2492 6.7311 18 7 -0.6554 9.7441 7.8915 19 14 -0.6401 12.0448 6.3475 20 1 -0.1398 12.3648 4.9864 21 1 -2.1029 12.2931 6.4088 22 1 0.0500 12.9044 7.3428 23 6 1.6456 8.0405 3.9427 24 6 2.3743 7.3260 3.0123 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7066 2.1088 -0.7660 31 1 3.1897 1.1335 1.6957 32 1 2.8641 3.8052 0.1427 33 1 4.4414 3.2478 0.7512 34 1 2.0989 3.8106 2.4495 35 1 5.1651 4.8188 3.6373 36 1 5.6146 4.7106 1.9184 37 1 5.3925 6.3032 2.6813 38 1 2.7193 4.4218 4.6971 39 1 1.4285 5.6893 6.3655 40 1 -1.0987 10.3040 8.5480 41 1 1.3422 9.0547 3.7286 42 1 2.6419 7.7823 2.0707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296442434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -18.552516 kcal Electronic energy + Delta-G solvation = -20086.862944 eV Core-core repulsion = 17031.584678 eV Total energy + Delta-G solvation = -3055.278266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88789 -39.15397 -37.58636 -36.08853 -34.29727 -32.98261 -31.81982 -30.44752 -29.31113 -27.37610 -26.22048 -23.86680 -23.57440 -22.58798 -21.37428 -20.41560 -19.76404 -18.84513 -17.30555 -16.65977 -16.29738 -15.91067 -15.69920 -15.53513 -15.52311 -15.17218 -14.71652 -14.47155 -14.21917 -14.01751 -13.87261 -13.64668 -13.51120 -13.06697 -12.93036 -12.85642 -12.66597 -12.47445 -12.37806 -12.15261 -12.09120 -11.85369 -11.69483 -11.49357 -11.17965 -10.79945 -9.92755 -9.77920 -9.35350 -8.91608 -8.47745 -6.15903 0.59688 0.67602 1.32279 1.34579 1.42973 1.52950 2.17119 2.81052 3.14569 3.34715 3.52134 3.87224 3.93993 4.10852 4.15734 4.22400 4.36886 4.40696 4.51376 4.51856 4.57410 4.62393 4.72230 4.75418 4.80033 4.95745 4.99945 5.04366 5.09793 5.12585 5.16078 5.19738 5.29089 5.37883 5.44854 5.56801 5.70850 5.72190 5.81390 5.90607 6.02670 6.19461 6.25077 6.48492 6.97113 7.78408 8.75858 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.003010 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.003350 B = 9301.547593 C = 9822.852141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.155 4.155 4 C -0.159 4.159 5 C 0.089 3.911 6 N -0.684 5.684 7 C 0.145 3.855 8 H 0.054 0.946 9 C -0.130 4.130 10 C -0.165 4.165 11 C -0.046 4.046 12 C -0.205 4.205 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.242 4.242 24 C -0.064 4.064 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.342 0.658 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -13.666 -17.190 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.174 4.174 4 C -0.178 4.178 5 C -0.039 4.039 6 N -0.315 5.315 7 C 0.036 3.964 8 H 0.072 0.928 9 C -0.188 4.188 10 C -0.166 4.166 11 C -0.064 4.064 12 C -0.225 4.225 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.261 4.261 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.986 -13.924 -16.501 23.020 hybrid contribution -1.110 1.386 -0.091 1.778 sum 6.875 -12.538 -16.591 21.903 Atomic orbital electron populations 1.21719 0.95033 1.02134 1.01752 1.20657 0.96216 0.93676 1.02726 1.23045 0.97384 0.98037 0.98976 1.22799 0.99059 0.96639 0.99256 1.21061 1.01285 0.92096 0.89461 1.60609 1.23392 1.16632 1.30906 1.20185 0.94456 0.86778 0.94998 0.92807 1.21749 0.93749 1.01377 1.01912 1.19749 1.04654 0.95112 0.97078 1.20761 0.94565 0.99324 0.91734 1.20486 1.06822 0.93126 1.02043 1.19943 0.91035 0.92852 0.89748 1.83943 1.63237 1.24131 1.42656 1.21858 1.40176 0.83398 1.03456 0.88120 1.26598 0.95975 1.05242 0.94295 1.70188 1.39675 1.38720 1.07383 0.84525 0.78557 0.73827 0.79255 1.17457 1.19301 1.19347 1.21218 1.07633 1.01885 0.95395 1.20938 0.95173 0.93854 0.98235 0.92475 0.91689 0.93496 0.90260 0.91547 0.87373 0.87017 0.94890 0.89768 0.83953 0.92834 0.91478 0.92574 0.83744 0.87075 0.91832 0.86395 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.10 -1.27 6.38 29.85 0.19 -1.08 16 3 C -0.16 -2.41 9.12 25.65 0.23 -2.18 16 4 C -0.16 -2.70 9.38 25.65 0.24 -2.46 16 5 C 0.09 1.60 5.92 85.56 0.51 2.10 16 6 N -0.68 -14.86 5.67 -499.46 -2.83 -17.69 16 7 C 0.14 3.41 2.82 44.17 0.12 3.54 16 8 H 0.05 1.18 7.66 -2.38 -0.02 1.16 16 9 C -0.13 -2.82 9.39 71.98 0.68 -2.14 16 10 C -0.16 -5.12 4.72 -19.84 -0.09 -5.21 16 11 C -0.05 -1.56 8.99 22.25 0.20 -1.36 16 12 C -0.21 -8.90 9.99 22.39 0.22 -8.68 16 13 C 0.11 5.77 6.65 22.58 0.15 5.92 16 14 O -0.23 -14.20 9.76 -22.63 -0.22 -14.42 16 15 C -0.41 -24.26 9.49 67.92 0.64 -23.61 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 17 C -0.02 -1.36 5.49 84.84 0.47 -0.90 16 18 N -0.92 -57.06 13.67 21.61 0.30 -56.77 16 19 Si 1.02 43.12 29.55 68.60 2.03 45.14 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 24 C -0.06 -2.18 9.66 22.25 0.21 -1.97 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16 30 H 0.11 1.61 7.84 -2.91 -0.02 1.59 16 31 H 0.11 1.94 7.84 -2.91 -0.02 1.92 16 32 H 0.03 0.58 7.71 -2.38 -0.02 0.56 16 33 H 0.08 1.40 7.44 -2.39 -0.02 1.38 16 34 H 0.34 8.04 7.97 -89.69 -0.71 7.32 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.21 7.45 -2.39 -0.02 1.19 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.14 4.24 7.70 -2.91 -0.02 4.22 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 42 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 Total: -1.00 -67.61 350.54 4.25 -63.36 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.28 Total: 30.04 kcal Atomic # 6 Polarization: -54.36 SS G_CDS: 4.70 Total: -49.66 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -2.54 Total: -74.46 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.22 Total: -14.42 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.61 4.25 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296442434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.810 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds