Wall clock time and date at job start Mon Mar 30 2020 01:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 N 1.46893 * 115.55399 * 296.49577 * 3 2 1 5 5 C 1.46894 * 111.00558 * 156.42588 * 4 3 2 6 6 H 1.09005 * 109.46857 * 31.91943 * 5 4 3 7 7 C 1.52998 * 109.47446 * 271.92453 * 5 4 3 8 8 C 1.50697 * 109.47400 * 151.92200 * 5 4 3 9 9 C 1.38304 * 119.93182 * 220.00288 * 8 5 4 10 10 C 1.38096 * 120.06911 * 179.97438 * 9 8 5 11 11 C 1.38883 * 119.93171 * 0.28319 * 10 9 8 12 12 O 1.35753 * 120.06712 * 179.72075 * 11 10 9 13 13 C 1.34826 * 117.00404 * 6.06497 * 12 11 10 14 14 H 1.07999 * 119.99768 * 5.16406 * 13 12 11 15 15 C 1.38651 * 120.00383 * 185.15983 * 13 12 11 16 16 N 1.31557 * 119.99756 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00369 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47175 * 90.00138 * 17 15 13 19 19 H 1.48500 * 109.47328 * 210.00347 * 17 15 13 20 20 H 1.48502 * 109.47219 * 330.00547 * 17 15 13 21 21 C 1.38875 * 119.85784 * 359.41900 * 11 10 9 22 22 C 1.38098 * 119.93252 * 0.57828 * 21 11 10 23 23 C 1.53002 * 117.51912 * 82.19890 * 3 2 1 24 24 C 1.52990 * 60.00297 * 107.48168 * 23 3 2 25 25 H 1.09003 * 109.46853 * 305.11851 * 1 2 3 26 26 H 1.08996 * 109.47126 * 65.11222 * 1 2 3 27 27 H 1.08995 * 109.47555 * 185.11578 * 1 2 3 28 28 H 1.08994 * 109.46920 * 239.99725 * 2 1 3 29 29 H 1.09002 * 109.46915 * 120.00214 * 2 1 3 30 30 H 1.00900 * 111.00191 * 280.38948 * 4 3 2 31 31 H 1.09004 * 109.47582 * 64.28486 * 7 5 4 32 32 H 1.08999 * 109.47516 * 184.28976 * 7 5 4 33 33 H 1.08999 * 109.46795 * 304.28816 * 7 5 4 34 34 H 1.08001 * 119.96651 * 0.02562 * 9 8 5 35 35 H 1.08008 * 120.03417 * 179.97438 * 10 9 8 36 36 H 0.96994 * 120.00252 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.03386 * 180.29981 * 21 11 10 38 38 H 1.08003 * 119.96483 * 179.74345 * 22 21 11 39 39 H 1.09002 * 117.49991 * 214.97452 * 23 3 2 40 40 H 1.09006 * 117.49449 * 359.97438 * 23 3 2 41 41 H 1.09010 * 117.49713 * 252.51460 * 24 23 3 42 42 H 1.08998 * 117.50476 * 107.49001 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.6938 2.2369 -1.1860 5 6 1.7131 3.6738 -0.8813 6 1 2.4674 3.8737 -0.1203 7 6 0.3393 4.1036 -0.3628 8 6 2.0430 4.4481 -2.1313 9 6 2.8859 5.5424 -2.0629 10 6 3.1906 6.2537 -3.2067 11 6 2.6449 5.8727 -4.4257 12 8 2.9381 6.5734 -5.5508 13 6 3.8617 7.5494 -5.4410 14 1 4.3917 7.6890 -4.5104 15 6 4.1312 8.3739 -6.5227 16 7 3.4853 8.2041 -7.6561 17 14 5.4114 9.7257 -6.3707 18 1 6.7416 9.1939 -6.7619 19 1 5.0475 10.8548 -7.2639 20 1 5.4629 10.2029 -4.9654 21 6 1.8038 4.7696 -4.4921 22 6 1.5030 4.0624 -3.3447 23 6 2.1020 2.1703 1.3443 24 6 3.3927 1.7135 0.6616 25 1 -0.3633 0.5912 0.8406 26 1 -0.3633 0.4325 -0.9322 27 1 -0.3634 -1.0235 0.0916 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.3085 2.0225 -1.9570 31 1 0.1335 3.6001 0.5818 32 1 0.3303 5.1827 -0.2089 33 1 -0.4248 3.8343 -1.0920 34 1 3.3070 5.8406 -1.1141 35 1 3.8486 7.1085 -3.1525 36 1 3.6735 8.7810 -8.4127 37 1 1.3818 4.4679 -5.4393 38 1 0.8456 3.2070 -3.3951 39 1 1.8859 3.2387 1.3487 40 1 1.7790 1.6216 2.2291 41 1 3.9191 0.8641 1.0972 42 1 4.0258 2.4812 0.2167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296498146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:50 Heat of formation + Delta-G solvation = 18.411170 kcal Electronic energy + Delta-G solvation = -20983.547001 eV Core-core repulsion = 17929.871601 eV Total energy + Delta-G solvation = -3053.675400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77590 -38.75588 -36.72110 -33.84971 -32.22968 -31.84219 -30.26250 -29.35000 -27.99828 -25.40175 -24.10539 -22.59229 -22.31819 -21.95319 -20.07517 -19.04695 -17.91102 -17.03225 -16.59729 -15.50037 -14.92334 -14.58018 -14.51929 -14.02026 -13.83882 -13.63736 -13.52764 -13.17182 -12.82777 -12.63784 -12.42941 -12.32056 -11.91980 -11.69368 -11.65557 -11.40707 -11.33150 -11.23349 -11.05836 -10.79036 -10.70517 -10.51154 -10.42310 -10.28288 -9.94419 -9.37600 -8.83569 -8.25184 -8.17504 -7.18979 -6.46413 -4.05237 2.21420 2.29201 3.11673 3.12327 3.17172 3.66786 3.95484 4.09764 4.53699 4.57802 4.74890 4.81944 5.08315 5.11994 5.26418 5.30960 5.36796 5.44084 5.47384 5.53988 5.66522 5.68198 5.78960 5.84154 5.86901 5.97601 5.99351 6.05040 6.07453 6.11824 6.23276 6.31313 6.40422 6.49947 6.72098 6.87086 7.03469 7.07625 7.24964 7.41866 7.43124 7.54079 7.82385 7.98556 8.99235 9.69704 10.71650 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.003439 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.969110 B = 8141.018990 C = 8436.000725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C 0.060 3.940 4 N -0.643 5.643 5 C 0.136 3.864 6 H 0.050 0.950 7 C -0.134 4.134 8 C -0.194 4.194 9 C -0.066 4.066 10 C -0.234 4.234 11 C 0.155 3.845 12 O -0.178 6.178 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.194 4.194 22 C -0.057 4.057 23 C -0.184 4.184 24 C -0.220 4.220 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.349 0.651 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -11.651 15.328 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.032 4.032 4 N -0.274 5.274 5 C 0.027 3.973 6 H 0.068 0.932 7 C -0.192 4.192 8 C -0.195 4.195 9 C -0.084 4.084 10 C -0.253 4.253 11 C 0.101 3.899 12 O -0.081 6.081 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.214 4.214 22 C -0.075 4.075 23 C -0.221 4.221 24 C -0.259 4.259 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.170 0.830 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.474 -11.604 14.918 19.217 hybrid contribution 1.727 1.052 0.219 2.034 sum -1.747 -10.552 15.138 18.535 Atomic orbital electron populations 1.21593 0.94940 1.00397 1.02792 1.20896 0.96603 0.92052 1.01506 1.21754 0.96799 0.94800 0.89886 1.60366 1.56782 1.04617 1.05659 1.20267 0.96870 0.85858 0.94277 0.93216 1.21853 0.96767 1.00083 1.00476 1.19297 1.05324 1.00667 0.94205 1.20572 0.96385 0.94518 0.96958 1.21121 1.07567 1.04149 0.92459 1.19435 0.92413 0.91202 0.86834 1.83992 1.53112 1.42978 1.28018 1.21310 1.15053 1.10001 1.00449 0.89157 1.25286 0.98488 0.98176 0.94555 1.70035 1.39740 1.37887 1.02037 0.85720 0.79621 0.79471 0.78669 1.19870 1.20227 1.19219 1.20249 1.04718 0.97543 0.98872 1.20497 0.97691 0.98173 0.91163 1.23428 1.01357 1.01584 0.95771 1.23593 0.92077 1.03931 1.06329 0.93140 0.91538 0.93584 0.91584 0.92076 0.83025 0.93106 0.92798 0.91984 0.87900 0.85653 0.91998 0.86574 0.86310 0.87722 0.88855 0.88949 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.82 37.16 0.36 -0.91 16 2 C -0.07 -0.67 5.99 -26.73 -0.16 -0.83 16 3 C 0.06 0.63 2.49 -131.61 -0.33 0.31 16 4 N -0.64 -7.86 5.79 -94.26 -0.55 -8.41 16 5 C 0.14 1.82 2.23 -68.87 -0.15 1.67 16 6 H 0.05 0.66 4.92 -51.93 -0.26 0.41 16 7 C -0.13 -1.70 8.99 37.16 0.33 -1.37 16 8 C -0.19 -3.22 4.72 -104.58 -0.49 -3.71 16 9 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 10 C -0.23 -5.06 9.13 -39.39 -0.36 -5.42 16 11 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 12 O -0.18 -5.09 9.76 0.05 0.00 -5.08 16 13 C -0.39 -10.97 9.44 30.89 0.29 -10.68 16 14 H 0.09 2.34 5.30 -52.49 -0.28 2.07 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 17 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.19 -4.09 9.99 -39.40 -0.39 -4.49 16 22 C -0.06 -1.00 8.93 -39.61 -0.35 -1.35 16 23 C -0.18 -1.85 8.54 -26.74 -0.23 -2.08 16 24 C -0.22 -2.27 9.59 -26.73 -0.26 -2.53 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.35 4.51 7.94 -39.29 -0.31 4.19 16 31 H 0.05 0.58 6.55 -51.93 -0.34 0.24 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 35 H 0.13 2.74 5.72 -52.48 -0.30 2.44 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 38 H 0.12 1.85 7.71 -52.48 -0.40 1.45 16 39 H 0.10 1.12 4.85 -51.93 -0.25 0.86 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.09 1.06 7.61 -51.93 -0.40 0.67 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -29.16 339.99 -8.48 -37.64 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.32 Total: 8.30 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -2.47 Total: -28.50 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.21 Total: -32.97 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.16 -8.48 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296498146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.054 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds