Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 N 1.46893 * 115.55399 * 296.49577 * 3 2 1 5 5 C 1.46894 * 111.00558 * 156.42588 * 4 3 2 6 6 H 1.09005 * 109.46857 * 31.91943 * 5 4 3 7 7 C 1.52998 * 109.47446 * 271.92453 * 5 4 3 8 8 C 1.50697 * 109.47400 * 151.92200 * 5 4 3 9 9 C 1.38304 * 119.93182 * 220.00288 * 8 5 4 10 10 C 1.38096 * 120.06911 * 179.97438 * 9 8 5 11 11 C 1.38883 * 119.93171 * 0.28319 * 10 9 8 12 12 O 1.35753 * 120.06712 * 179.72075 * 11 10 9 13 13 C 1.34826 * 117.00404 * 6.06497 * 12 11 10 14 14 H 1.07999 * 119.99768 * 5.16406 * 13 12 11 15 15 C 1.38651 * 120.00383 * 185.15983 * 13 12 11 16 16 N 1.31557 * 119.99756 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00369 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47175 * 90.00138 * 17 15 13 19 19 H 1.48500 * 109.47328 * 210.00347 * 17 15 13 20 20 H 1.48502 * 109.47219 * 330.00547 * 17 15 13 21 21 C 1.38875 * 119.85784 * 359.41900 * 11 10 9 22 22 C 1.38098 * 119.93252 * 0.57828 * 21 11 10 23 23 C 1.53002 * 117.51912 * 82.19890 * 3 2 1 24 24 C 1.52990 * 60.00297 * 107.48168 * 23 3 2 25 25 H 1.09003 * 109.46853 * 305.11851 * 1 2 3 26 26 H 1.08996 * 109.47126 * 65.11222 * 1 2 3 27 27 H 1.08995 * 109.47555 * 185.11578 * 1 2 3 28 28 H 1.08994 * 109.46920 * 239.99725 * 2 1 3 29 29 H 1.09002 * 109.46915 * 120.00214 * 2 1 3 30 30 H 1.00900 * 111.00191 * 280.38948 * 4 3 2 31 31 H 1.09004 * 109.47582 * 64.28486 * 7 5 4 32 32 H 1.08999 * 109.47516 * 184.28976 * 7 5 4 33 33 H 1.08999 * 109.46795 * 304.28816 * 7 5 4 34 34 H 1.08001 * 119.96651 * 0.02562 * 9 8 5 35 35 H 1.08008 * 120.03417 * 179.97438 * 10 9 8 36 36 H 0.96994 * 120.00252 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.03386 * 180.29981 * 21 11 10 38 38 H 1.08003 * 119.96483 * 179.74345 * 22 21 11 39 39 H 1.09002 * 117.49991 * 214.97452 * 23 3 2 40 40 H 1.09006 * 117.49449 * 359.97438 * 23 3 2 41 41 H 1.09010 * 117.49713 * 252.51460 * 24 23 3 42 42 H 1.08998 * 117.50476 * 107.49001 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.6938 2.2369 -1.1860 5 6 1.7131 3.6738 -0.8813 6 1 2.4674 3.8737 -0.1203 7 6 0.3393 4.1036 -0.3628 8 6 2.0430 4.4481 -2.1313 9 6 2.8859 5.5424 -2.0629 10 6 3.1906 6.2537 -3.2067 11 6 2.6449 5.8727 -4.4257 12 8 2.9381 6.5734 -5.5508 13 6 3.8617 7.5494 -5.4410 14 1 4.3917 7.6890 -4.5104 15 6 4.1312 8.3739 -6.5227 16 7 3.4853 8.2041 -7.6561 17 14 5.4114 9.7257 -6.3707 18 1 6.7416 9.1939 -6.7619 19 1 5.0475 10.8548 -7.2639 20 1 5.4629 10.2029 -4.9654 21 6 1.8038 4.7696 -4.4921 22 6 1.5030 4.0624 -3.3447 23 6 2.1020 2.1703 1.3443 24 6 3.3927 1.7135 0.6616 25 1 -0.3633 0.5912 0.8406 26 1 -0.3633 0.4325 -0.9322 27 1 -0.3634 -1.0235 0.0916 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.3085 2.0225 -1.9570 31 1 0.1335 3.6001 0.5818 32 1 0.3303 5.1827 -0.2089 33 1 -0.4248 3.8343 -1.0920 34 1 3.3070 5.8406 -1.1141 35 1 3.8486 7.1085 -3.1525 36 1 3.6735 8.7810 -8.4127 37 1 1.3818 4.4679 -5.4393 38 1 0.8456 3.2070 -3.3951 39 1 1.8859 3.2387 1.3487 40 1 1.7790 1.6216 2.2291 41 1 3.9191 0.8641 1.0972 42 1 4.0258 2.4812 0.2167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296498146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = 1.738595 kcal Electronic energy + Delta-G solvation = -20984.269978 eV Core-core repulsion = 17929.871601 eV Total energy + Delta-G solvation = -3054.398377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07353 -40.16435 -38.31068 -35.11949 -34.14941 -32.60513 -31.86343 -30.50525 -29.43715 -27.37072 -24.91219 -23.87376 -23.62955 -23.13569 -21.46083 -20.11517 -19.59461 -18.83772 -17.64308 -16.83034 -16.24561 -16.10179 -15.74143 -15.51770 -15.38674 -15.10401 -14.63149 -14.35301 -14.20363 -13.97192 -13.74554 -13.53114 -13.26789 -13.09581 -12.88828 -12.54502 -12.46846 -12.28331 -12.23908 -12.14288 -12.12956 -11.82916 -11.56063 -11.40964 -11.22271 -10.79379 -10.75167 -9.79304 -9.19497 -8.92957 -8.48343 -6.16542 0.58289 0.66655 1.34020 1.43279 1.51510 2.16726 2.79623 2.87135 3.10161 3.19412 3.50343 3.79581 3.88243 3.95694 4.04435 4.07325 4.21580 4.37245 4.51269 4.57160 4.60358 4.70832 4.73707 4.74635 4.78418 4.93614 4.99157 5.05964 5.11927 5.13529 5.17614 5.22347 5.27515 5.28596 5.37013 5.46991 5.56024 5.59964 5.70283 5.71992 6.01465 6.19299 6.25473 6.46529 6.96360 7.77434 8.75020 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036168 B = 0.003439 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.969110 B = 8141.018990 C = 8436.000725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C 0.052 3.948 4 N -0.645 5.645 5 C 0.142 3.858 6 H 0.060 0.940 7 C -0.131 4.131 8 C -0.165 4.165 9 C -0.064 4.064 10 C -0.241 4.241 11 C 0.115 3.885 12 O -0.233 6.233 13 C -0.414 4.414 14 H 0.100 0.900 15 C -0.023 4.023 16 N -0.920 5.920 17 Si 1.018 2.982 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.253 1.253 21 C -0.204 4.204 22 C -0.046 4.046 23 C -0.179 4.179 24 C -0.220 4.220 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.345 0.655 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.273 0.727 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -12.885 18.662 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.040 4.040 4 N -0.275 5.275 5 C 0.033 3.967 6 H 0.078 0.922 7 C -0.189 4.189 8 C -0.166 4.166 9 C -0.083 4.083 10 C -0.260 4.260 11 C 0.064 3.936 12 O -0.139 6.139 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.837 3.163 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.224 4.224 22 C -0.064 4.064 23 C -0.216 4.216 24 C -0.260 4.260 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.164 0.836 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.305 -12.880 18.310 22.629 hybrid contribution 1.536 1.156 -0.552 2.000 sum -1.769 -11.725 17.758 21.353 Atomic orbital electron populations 1.21556 0.94895 1.01033 1.01918 1.20915 0.96558 0.91186 1.02186 1.21883 0.97330 0.95337 0.89434 1.60374 1.56902 1.03790 1.06472 1.20256 0.97759 0.86315 0.92370 0.92228 1.21824 0.95676 1.00223 1.01159 1.19773 1.02275 0.99271 0.95302 1.20910 0.96150 0.94204 0.97020 1.21209 1.07491 1.04489 0.92846 1.19955 0.94340 0.92244 0.87040 1.83951 1.54897 1.44677 1.30396 1.21794 1.15700 1.10283 1.01201 0.88249 1.26586 1.00865 1.00710 0.93853 1.70181 1.42553 1.39905 1.03223 0.84594 0.76484 0.75813 0.79370 1.18795 1.19541 1.17656 1.20484 1.04439 0.97249 1.00183 1.20767 0.97292 0.98105 0.90271 1.23490 1.00802 1.01445 0.95908 1.23598 0.91980 1.04090 1.06306 0.93145 0.93041 0.92432 0.91762 0.90570 0.83508 0.91275 0.92908 0.92685 0.84656 0.86494 0.91809 0.86994 0.83630 0.88153 0.87290 0.87687 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.82 71.98 0.71 -1.39 16 2 C -0.07 -1.07 5.99 30.59 0.18 -0.89 16 3 C 0.05 0.93 2.49 3.53 0.01 0.94 16 4 N -0.64 -13.80 5.79 -452.12 -2.62 -16.42 16 5 C 0.14 3.33 2.23 44.17 0.10 3.43 16 6 H 0.06 1.35 4.92 -2.38 -0.01 1.34 16 7 C -0.13 -2.88 8.99 71.98 0.65 -2.24 16 8 C -0.17 -5.09 4.72 -19.84 -0.09 -5.19 16 9 C -0.06 -2.22 9.66 22.25 0.21 -2.00 16 10 C -0.24 -10.56 9.13 22.39 0.20 -10.35 16 11 C 0.11 5.75 6.65 22.58 0.15 5.90 16 12 O -0.23 -14.16 9.76 -22.74 -0.22 -14.38 16 13 C -0.41 -24.31 9.44 67.92 0.64 -23.67 16 14 H 0.10 5.37 5.30 -2.91 -0.02 5.35 16 15 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 16 N -0.92 -56.91 13.67 21.61 0.30 -56.62 16 17 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 21 C -0.20 -8.78 9.99 22.39 0.22 -8.55 16 22 C -0.05 -1.56 8.93 22.25 0.20 -1.36 16 23 C -0.18 -2.91 8.54 30.59 0.26 -2.65 16 24 C -0.22 -3.82 9.59 30.59 0.29 -3.52 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.34 7.96 7.94 -89.69 -0.71 7.25 16 31 H 0.07 1.30 6.55 -2.38 -0.02 1.29 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.14 3.81 8.03 -2.91 -0.02 3.78 16 35 H 0.12 5.24 5.72 -2.91 -0.02 5.22 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.15 4.17 7.71 -2.91 -0.02 4.15 16 39 H 0.10 1.73 4.85 -2.39 -0.01 1.72 16 40 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.08 1.61 7.61 -2.39 -0.02 1.59 16 Total: -1.00 -67.21 339.99 3.99 -63.22 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.30 Total: 31.48 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.20 Total: -52.37 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.32 Total: -73.04 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.22 Total: -14.38 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.21 3.99 -63.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296498146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.962 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds