Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 N 1.46898 * 115.54952 * 56.84007 * 3 2 1 5 5 C 1.46902 * 111.00162 * 60.72631 * 4 3 2 6 6 H 1.09005 * 109.47074 * 326.65505 * 5 4 3 7 7 C 1.52991 * 109.47240 * 86.65774 * 5 4 3 8 8 C 1.50697 * 109.47228 * 206.66383 * 5 4 3 9 9 C 1.38302 * 119.93294 * 140.00007 * 8 5 4 10 10 C 1.38102 * 120.06733 * 179.97438 * 9 8 5 11 11 C 1.38876 * 119.93185 * 359.97438 * 10 9 8 12 12 O 1.35752 * 120.06656 * 180.02562 * 11 10 9 13 13 C 1.34832 * 116.99964 * 175.82661 * 12 11 10 14 14 H 1.08006 * 120.00084 * 5.46181 * 13 12 11 15 15 C 1.38649 * 120.00235 * 185.45807 * 13 12 11 16 16 N 1.31562 * 119.99965 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47153 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47466 * 120.00081 * 17 15 13 20 20 H 1.48504 * 109.46837 * 239.99879 * 17 15 13 21 21 C 1.38873 * 119.86242 * 0.02562 * 11 10 9 22 22 C 1.38094 * 119.93452 * 0.02562 * 21 11 10 23 23 C 1.52990 * 117.50066 * 202.51372 * 3 2 1 24 24 C 1.52999 * 117.49569 * 271.17597 * 3 2 1 25 25 H 1.08996 * 109.47520 * 184.42961 * 1 2 3 26 26 H 1.09003 * 109.47326 * 304.42577 * 1 2 3 27 27 H 1.08997 * 109.47389 * 64.42485 * 1 2 3 28 28 H 1.08995 * 109.47039 * 239.99482 * 2 1 3 29 29 H 1.09004 * 109.46581 * 119.99715 * 2 1 3 30 30 H 1.00901 * 111.00317 * 296.77037 * 4 3 2 31 31 H 1.08998 * 109.47260 * 60.00263 * 7 5 4 32 32 H 1.09003 * 109.47024 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47265 * 300.00204 * 7 5 4 34 34 H 1.08001 * 119.96801 * 359.68976 * 9 8 5 35 35 H 1.08003 * 120.03381 * 179.97438 * 10 9 8 36 36 H 0.97002 * 119.99587 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03763 * 179.97438 * 21 11 10 38 38 H 1.07997 * 119.97160 * 180.02562 * 22 21 11 39 39 H 1.09003 * 117.50020 * 215.00068 * 23 3 2 40 40 H 1.09007 * 117.49898 * 0.02562 * 23 3 2 41 41 H 1.08995 * 117.50282 * 359.96834 * 24 3 2 42 42 H 1.09003 * 117.49572 * 144.99971 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5678 2.2815 1.1095 5 6 1.9919 1.7306 2.4036 6 1 2.0117 0.6423 2.3463 7 6 3.3902 2.2490 2.7449 8 6 1.0219 2.1595 3.4742 9 6 0.6453 1.2674 4.4617 10 6 -0.2430 1.6576 5.4445 11 6 -0.7578 2.9475 5.4409 12 8 -1.6307 3.3341 6.4059 13 6 -2.0247 4.6235 6.3940 14 1 -1.7173 5.2747 5.5890 15 6 -2.8245 5.1135 7.4151 16 7 -3.1986 4.3205 8.3958 17 14 -3.3708 6.8998 7.3981 18 1 -2.8189 7.5749 6.1961 19 1 -4.8540 6.9635 7.3651 20 1 -2.8732 7.5811 8.6202 21 6 -0.3776 3.8409 4.4480 22 6 0.5102 3.4444 3.4673 23 6 3.4574 1.6906 -0.5196 24 6 2.2493 2.1177 -1.3569 25 1 -0.3634 -1.0245 0.0794 26 1 -0.3634 0.5810 0.8477 27 1 -0.3634 0.4436 -0.9269 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 0.5658 2.3952 1.0758 31 1 3.3704 3.3373 2.8023 32 1 3.7051 1.8399 3.7050 33 1 4.0918 1.9387 1.9705 34 1 1.0427 0.2631 4.4616 35 1 -0.5371 0.9604 6.2151 36 1 -3.7585 4.6633 9.1100 37 1 -0.7765 4.8445 4.4422 38 1 0.8066 4.1388 2.6951 39 1 4.0396 2.4764 -0.0382 40 1 4.0265 0.8262 -0.8619 41 1 2.0241 1.5342 -2.2495 42 1 2.0366 3.1846 -1.4262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296499968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -3.536140 kcal Electronic energy + Delta-G solvation = -21069.312957 eV Core-core repulsion = 18014.685850 eV Total energy + Delta-G solvation = -3054.627107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95740 -39.88111 -38.32937 -35.29283 -34.16027 -32.79478 -31.80040 -30.50035 -29.30343 -27.33378 -24.83230 -24.07915 -23.54136 -23.13061 -21.47005 -19.91474 -19.70943 -18.87277 -17.27739 -16.73815 -16.36655 -16.08912 -15.91454 -15.53291 -15.39768 -14.85475 -14.65768 -14.55757 -14.28729 -14.21462 -13.68076 -13.53544 -13.14053 -13.11401 -12.91360 -12.73388 -12.44575 -12.36707 -12.27916 -12.18990 -12.11003 -11.89959 -11.62490 -11.19578 -11.09401 -10.79658 -10.49490 -9.78161 -9.34638 -8.91475 -8.47962 -6.15994 0.59321 0.68184 1.34718 1.42800 1.53007 2.17213 2.79792 2.91419 3.12234 3.20373 3.51345 3.81984 3.90854 4.10037 4.12659 4.15977 4.20019 4.40163 4.47409 4.54547 4.59411 4.63506 4.69984 4.75253 4.87605 4.88650 4.98271 5.05208 5.09310 5.11069 5.13319 5.20564 5.24450 5.29591 5.37012 5.40540 5.47678 5.57086 5.71695 5.75638 6.02716 6.20596 6.30210 6.49674 6.97136 7.77951 8.75547 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.003651 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.200959 B = 7667.307417 C = 7848.862859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.025 3.975 4 N -0.652 5.652 5 C 0.149 3.851 6 H 0.059 0.941 7 C -0.131 4.131 8 C -0.164 4.164 9 C -0.061 4.061 10 C -0.203 4.203 11 C 0.114 3.886 12 O -0.233 6.233 13 C -0.413 4.413 14 H 0.101 0.899 15 C -0.023 4.023 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.252 1.252 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.242 4.242 22 C -0.049 4.049 23 C -0.158 4.158 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.343 0.657 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 -5.925 -18.475 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.067 4.067 4 N -0.283 5.283 5 C 0.040 3.960 6 H 0.077 0.923 7 C -0.189 4.189 8 C -0.165 4.165 9 C -0.079 4.079 10 C -0.222 4.222 11 C 0.064 3.936 12 O -0.139 6.139 13 C -0.489 4.489 14 H 0.118 0.882 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.837 3.163 18 H -0.175 1.175 19 H -0.192 1.192 20 H -0.193 1.193 21 C -0.262 4.262 22 C -0.068 4.068 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.184 -5.591 -18.149 22.563 hybrid contribution -1.278 0.090 0.775 1.498 sum 10.906 -5.501 -17.374 21.238 Atomic orbital electron populations 1.21703 0.95756 1.01813 1.01528 1.21474 0.95897 0.94813 1.02646 1.21559 1.00486 0.92099 0.92569 1.60483 1.18545 1.48559 1.00718 1.20113 0.93121 0.97028 0.85710 0.92342 1.21792 0.95019 1.01105 1.00937 1.19794 1.02780 0.94298 0.99619 1.20854 0.94849 0.99665 0.92545 1.20414 1.04095 0.94305 1.03436 1.19939 0.89681 0.94724 0.89270 1.83942 1.53851 1.29552 1.46604 1.21854 1.32079 0.84512 1.10475 0.88192 1.26580 0.96324 1.05240 0.93852 1.70192 1.35634 1.38182 1.11902 0.84536 0.78366 0.74038 0.79314 1.17541 1.19246 1.19314 1.21255 1.05618 1.00599 0.98700 1.20807 0.93833 0.95974 0.96158 1.23129 0.90252 1.03442 1.02715 1.23081 1.01987 1.01163 0.93234 0.92107 0.94305 0.92152 0.90038 0.91939 0.83711 0.93300 0.92763 0.91272 0.83729 0.86932 0.91838 0.86613 0.84662 0.88893 0.87666 0.87629 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.72 71.98 0.70 -1.97 16 2 C -0.11 -1.77 5.51 30.59 0.17 -1.60 16 3 C 0.02 0.44 1.76 3.52 0.01 0.45 16 4 N -0.65 -14.43 5.68 -452.12 -2.57 -17.00 16 5 C 0.15 3.56 2.72 44.16 0.12 3.68 16 6 H 0.06 1.32 5.88 -2.38 -0.01 1.30 16 7 C -0.13 -2.94 9.35 71.98 0.67 -2.27 16 8 C -0.16 -5.10 4.72 -19.83 -0.09 -5.19 16 9 C -0.06 -2.03 9.66 22.25 0.21 -1.82 16 10 C -0.20 -8.71 9.99 22.39 0.22 -8.48 16 11 C 0.11 5.75 6.65 22.57 0.15 5.90 16 12 O -0.23 -14.20 9.76 -22.78 -0.22 -14.42 16 13 C -0.41 -24.38 9.48 67.92 0.64 -23.74 16 14 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 15 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 16 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 17 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 18 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 22 C -0.05 -1.74 8.96 22.25 0.20 -1.54 16 23 C -0.16 -2.44 9.15 30.62 0.28 -2.15 16 24 C -0.16 -2.44 10.16 30.62 0.31 -2.13 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.83 6.97 -2.39 -0.02 0.81 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.06 1.07 6.65 -2.39 -0.02 1.05 16 30 H 0.34 8.30 6.74 -89.69 -0.60 7.70 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.33 6.25 -2.39 -0.01 1.31 16 34 H 0.15 3.81 8.03 -2.91 -0.02 3.79 16 35 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.12 5.27 5.63 -2.91 -0.02 5.25 16 38 H 0.14 4.20 7.71 -2.91 -0.02 4.18 16 39 H 0.09 1.58 7.32 -2.39 -0.02 1.57 16 40 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -67.57 340.33 4.21 -63.36 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.41 Total: 31.64 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 4.27 Total: -52.24 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.27 Total: -73.71 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.22 Total: -14.42 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.57 4.21 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296499968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.826 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds