Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47095 * 2 1 4 4 C 1.53000 * 109.47216 * 120.00030 * 2 1 3 5 5 C 1.53005 * 109.47319 * 64.99905 * 4 2 1 6 6 C 1.52990 * 109.47350 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47234 * 180.02562 * 6 5 4 8 8 C 1.34782 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.47891 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.39923 * 120.02411 * 359.72358 * 10 8 7 12 12 C 1.38333 * 120.35611 * 179.74075 * 11 10 8 13 13 C 1.37755 * 120.40861 * 0.56181 * 12 11 10 14 14 C 1.40744 * 120.04191 * 359.69635 * 13 12 11 15 15 C 1.41438 * 120.17967 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99591 * 24.43812 * 15 14 13 17 17 C 1.39935 * 120.00120 * 204.44034 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.87513 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.88047 * 17 15 14 20 20 H 1.48502 * 109.47323 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46963 * 299.99731 * 19 17 15 23 23 C 1.38991 * 120.02263 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46732 * 60.00357 * 1 2 3 25 25 H 1.09007 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47133 * 299.99707 * 1 2 3 27 27 H 1.08997 * 109.47740 * 239.99891 * 2 1 3 28 28 H 1.09004 * 109.47163 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47343 * 299.99806 * 3 2 1 30 30 H 1.09003 * 109.46920 * 60.00298 * 3 2 1 31 31 H 1.09004 * 109.47074 * 305.00190 * 4 2 1 32 32 H 1.08996 * 109.47865 * 185.00022 * 4 2 1 33 33 H 1.09004 * 109.46815 * 60.00126 * 5 4 2 34 34 H 1.09006 * 109.46845 * 300.00750 * 5 4 2 35 35 H 1.09006 * 109.47437 * 299.99993 * 6 5 4 36 36 H 1.09004 * 109.47381 * 60.00078 * 6 5 4 37 37 H 0.97000 * 120.00134 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.81786 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.78886 * 180.28122 * 12 11 10 40 40 H 1.07995 * 119.97665 * 179.72109 * 13 12 11 41 41 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.20608 * 359.95800 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 6 2.1447 -2.9166 2.4375 7 7 1.7577 -4.3283 2.3785 8 6 2.1014 -5.1637 3.3789 9 8 2.7328 -4.7458 4.3297 10 6 1.7102 -6.5887 3.3196 11 6 0.9782 -7.0689 2.2281 12 6 0.6133 -8.4017 2.1630 13 6 0.9560 -9.2688 3.1771 14 6 1.6874 -8.8027 4.2855 15 6 2.0413 -9.6905 5.3281 16 1 2.1190 -10.7498 5.1322 17 6 2.2908 -9.1965 6.6134 18 7 1.8708 -8.0038 6.9486 19 14 3.2236 -10.2402 7.8503 20 1 4.5743 -10.5511 7.3171 21 1 3.3559 -9.4942 9.1275 22 1 2.4827 -11.5047 8.0896 23 6 2.0648 -7.4506 4.3507 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8935 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3002 34 1 0.5489 -2.2724 1.1420 35 1 3.2311 -2.8397 2.4839 36 1 1.7097 -2.4570 3.3250 37 1 1.2547 -4.6620 1.6192 38 1 0.7007 -6.3964 1.4298 39 1 0.0523 -8.7635 1.3140 40 1 0.6636 -10.3069 3.1213 41 1 2.0441 -7.6612 7.8394 42 1 2.6268 -7.0836 5.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298631024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -54.272134 kcal Electronic energy + Delta-G solvation = -20281.557280 eV Core-core repulsion = 17224.730095 eV Total energy + Delta-G solvation = -3056.827185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.19723 -37.47177 -36.87256 -34.54588 -33.71204 -31.40832 -29.88307 -29.40769 -27.42454 -26.05996 -25.17304 -22.58255 -21.57311 -20.86610 -20.23777 -19.35881 -17.68518 -16.20470 -15.92536 -15.49260 -15.06160 -14.86754 -14.66481 -14.22165 -13.96241 -13.57445 -13.43548 -13.15427 -12.63288 -12.48627 -12.46689 -12.34299 -11.92182 -11.76349 -11.60929 -11.27786 -11.13045 -11.05337 -10.90690 -10.75614 -10.73620 -10.62894 -10.49016 -10.01618 -9.68505 -9.19927 -8.98497 -8.61234 -7.61577 -7.51086 -6.79124 -4.40500 2.23398 2.83224 3.08108 3.09901 3.17587 3.72006 3.89345 3.93310 4.55322 4.64257 4.65877 4.69879 5.02038 5.10052 5.31050 5.39002 5.44770 5.53101 5.57560 5.61711 5.66579 5.68899 5.76207 5.85914 5.94137 5.99893 6.06386 6.11219 6.22285 6.23960 6.28862 6.73129 6.90941 7.00064 7.03687 7.22456 7.39379 7.71515 7.77565 7.94043 8.12240 8.21023 8.51625 8.81104 8.84663 8.99069 10.15592 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.003144 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.275595 B = 8902.392199 C = 9613.372782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.121 3.879 7 N -0.738 5.738 8 C 0.562 3.438 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.218 4.218 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.093 4.093 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.285 0.715 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 12.363 -10.699 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.150 4.150 5 C -0.170 4.170 6 C -0.003 4.003 7 N -0.392 5.392 8 C 0.353 3.647 9 O -0.426 6.426 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.824 12.856 -9.786 16.178 hybrid contribution 0.026 -0.530 0.196 0.566 sum -0.798 12.325 -9.590 15.637 Atomic orbital electron populations 1.21909 0.95274 1.02024 1.01559 1.21119 0.95953 0.96086 0.98417 1.21845 1.00949 0.96082 1.01640 1.21569 1.01136 0.94314 0.97991 1.21859 1.01750 0.95529 0.97857 1.21241 0.99906 0.81364 0.97812 1.45964 1.59506 1.09119 1.24609 1.18859 0.78055 0.86649 0.81164 1.90690 1.40368 1.78168 1.33334 1.19490 1.04319 0.91334 0.97978 1.20338 1.08956 0.95654 0.98908 1.20435 1.00005 0.93532 0.97647 1.21092 1.05658 0.98540 0.97969 1.17603 0.88855 0.92082 0.91873 1.19557 1.41183 0.95307 0.92866 0.90101 1.25969 0.93703 0.95290 0.99659 1.69782 1.33115 1.16749 1.21076 0.86321 0.80881 0.80342 0.78954 1.18718 1.20224 1.18961 1.21645 0.99580 0.93182 0.96900 0.92990 0.92278 0.92688 0.91242 0.92722 0.92864 0.92700 0.91613 0.91656 0.91408 0.91109 0.92058 0.92003 0.76647 0.89262 0.88915 0.88627 0.90371 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.95 37.16 0.33 -0.80 16 2 C -0.10 -0.75 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 4 C -0.11 -0.99 4.68 -26.73 -0.13 -1.11 16 5 C -0.13 -1.33 5.08 -26.73 -0.14 -1.47 16 6 C 0.12 1.70 5.67 -4.05 -0.02 1.68 16 7 N -0.74 -12.47 5.51 -61.24 -0.34 -12.81 16 8 C 0.56 12.61 7.77 -12.31 -0.10 12.52 16 9 O -0.55 -14.11 16.33 5.33 0.09 -14.02 16 10 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 11 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 13 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 14 C 0.10 2.63 5.57 -106.87 -0.60 2.03 16 15 C -0.46 -12.19 9.05 -37.73 -0.34 -12.53 16 16 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 18 N -0.78 -20.97 10.96 55.55 0.61 -20.36 16 19 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 23 C -0.09 -2.52 8.24 -38.44 -0.32 -2.83 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 6.57 -51.92 -0.34 0.12 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 5.78 6.49 -40.82 -0.26 5.51 16 38 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.29 7.03 8.30 -40.82 -0.34 6.69 16 42 H 0.13 3.91 5.74 -52.49 -0.30 3.61 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -29.80 344.81 -9.18 -38.98 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.63 Total: 8.25 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.08 Total: -19.13 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.27 Total: -33.17 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.80 -9.18 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298631024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds