Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47095 * 2 1 4 4 C 1.53000 * 109.47216 * 120.00030 * 2 1 3 5 5 C 1.53005 * 109.47319 * 64.99905 * 4 2 1 6 6 C 1.52990 * 109.47350 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47234 * 180.02562 * 6 5 4 8 8 C 1.34782 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.47891 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.39923 * 120.02411 * 359.72358 * 10 8 7 12 12 C 1.38333 * 120.35611 * 179.74075 * 11 10 8 13 13 C 1.37755 * 120.40861 * 0.56181 * 12 11 10 14 14 C 1.40744 * 120.04191 * 359.69635 * 13 12 11 15 15 C 1.41438 * 120.17967 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99591 * 24.43812 * 15 14 13 17 17 C 1.39935 * 120.00120 * 204.44034 * 15 14 13 18 18 N 1.30820 * 120.00060 * 17.87513 * 17 15 14 19 19 Si 1.86798 * 119.99804 * 197.88047 * 17 15 14 20 20 H 1.48502 * 109.47323 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47340 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46963 * 299.99731 * 19 17 15 23 23 C 1.38991 * 120.02263 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.46732 * 60.00357 * 1 2 3 25 25 H 1.09007 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47133 * 299.99707 * 1 2 3 27 27 H 1.08997 * 109.47740 * 239.99891 * 2 1 3 28 28 H 1.09004 * 109.47163 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47343 * 299.99806 * 3 2 1 30 30 H 1.09003 * 109.46920 * 60.00298 * 3 2 1 31 31 H 1.09004 * 109.47074 * 305.00190 * 4 2 1 32 32 H 1.08996 * 109.47865 * 185.00022 * 4 2 1 33 33 H 1.09004 * 109.46815 * 60.00126 * 5 4 2 34 34 H 1.09006 * 109.46845 * 300.00750 * 5 4 2 35 35 H 1.09006 * 109.47437 * 299.99993 * 6 5 4 36 36 H 1.09004 * 109.47381 * 60.00078 * 6 5 4 37 37 H 0.97000 * 120.00134 * 0.02562 * 7 6 5 38 38 H 1.08001 * 119.81786 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.78886 * 180.28122 * 12 11 10 40 40 H 1.07995 * 119.97665 * 179.72109 * 13 12 11 41 41 H 0.97000 * 119.99984 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.20608 * 359.95800 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 6 2.1447 -2.9166 2.4375 7 7 1.7577 -4.3283 2.3785 8 6 2.1014 -5.1637 3.3789 9 8 2.7328 -4.7458 4.3297 10 6 1.7102 -6.5887 3.3196 11 6 0.9782 -7.0689 2.2281 12 6 0.6133 -8.4017 2.1630 13 6 0.9560 -9.2688 3.1771 14 6 1.6874 -8.8027 4.2855 15 6 2.0413 -9.6905 5.3281 16 1 2.1190 -10.7498 5.1322 17 6 2.2908 -9.1965 6.6134 18 7 1.8708 -8.0038 6.9486 19 14 3.2236 -10.2402 7.8503 20 1 4.5743 -10.5511 7.3171 21 1 3.3559 -9.4942 9.1275 22 1 2.4827 -11.5047 8.0896 23 6 2.0648 -7.4506 4.3507 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8935 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3002 34 1 0.5489 -2.2724 1.1420 35 1 3.2311 -2.8397 2.4839 36 1 1.7097 -2.4570 3.3250 37 1 1.2547 -4.6620 1.6192 38 1 0.7007 -6.3964 1.4298 39 1 0.0523 -8.7635 1.3140 40 1 0.6636 -10.3069 3.1213 41 1 2.0441 -7.6612 7.8394 42 1 2.6268 -7.0836 5.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298631024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -70.837001 kcal Electronic energy + Delta-G solvation = -20282.275586 eV Core-core repulsion = 17224.730095 eV Total energy + Delta-G solvation = -3057.545491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90461 -38.90596 -38.06494 -35.94054 -35.53541 -32.74706 -31.48146 -31.22361 -27.98736 -27.44716 -26.78315 -24.08284 -22.93151 -22.52703 -21.28021 -20.67485 -19.47703 -17.93947 -17.18024 -16.86705 -16.71038 -16.40020 -15.90257 -15.45871 -15.14115 -15.02175 -14.76695 -14.35306 -14.26240 -14.24260 -13.51010 -13.33084 -13.06441 -12.94694 -12.80639 -12.65311 -12.56915 -12.50613 -12.20258 -12.00808 -11.90851 -11.58400 -11.51039 -11.42501 -11.34977 -11.06940 -10.76390 -10.14793 -9.47320 -9.38766 -8.67029 -6.38599 0.37722 1.01054 1.35716 1.47715 1.50401 2.09524 2.18978 2.27123 2.78433 3.69696 3.76919 3.95986 3.97712 4.09200 4.21960 4.32495 4.43490 4.53311 4.60033 4.67306 4.73313 4.84425 4.87927 4.90495 4.98252 5.05169 5.08518 5.11880 5.19359 5.23378 5.25667 5.31114 5.35503 5.48715 5.51843 5.54359 5.57031 5.86565 5.92440 6.05129 6.28497 6.51392 6.69395 6.87286 6.94495 7.31295 8.29658 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.003144 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.275595 B = 8902.392199 C = 9613.372782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.118 3.882 7 N -0.713 5.713 8 C 0.557 3.443 9 O -0.592 6.592 10 C -0.140 4.140 11 C -0.197 4.197 12 C -0.095 4.095 13 C -0.217 4.217 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.251 1.251 23 C -0.133 4.133 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.414 0.586 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 12.685 -13.314 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.006 4.006 7 N -0.366 5.366 8 C 0.347 3.653 9 O -0.474 6.474 10 C -0.143 4.143 11 C -0.217 4.217 12 C -0.113 4.113 13 C -0.237 4.237 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.103 0.897 17 C -0.187 4.187 18 N -0.451 5.451 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.154 4.154 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.252 0.748 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.783 13.191 -12.467 18.238 hybrid contribution 0.236 -0.526 0.801 0.987 sum -1.547 12.665 -11.667 17.289 Atomic orbital electron populations 1.21918 0.95045 1.02064 1.01808 1.21096 0.96099 0.96317 0.97772 1.21844 1.01024 0.95722 1.01945 1.21562 1.01180 0.93526 0.98621 1.21794 1.02267 0.95715 0.95878 1.21452 0.99614 0.79770 0.99724 1.45782 1.57892 1.09676 1.23254 1.18802 0.77993 0.86788 0.81766 1.90665 1.42580 1.78770 1.35412 1.19802 1.04353 0.92031 0.98124 1.20865 1.05906 0.96517 0.98400 1.20941 0.99171 0.93142 0.98077 1.21417 1.04779 0.99827 0.97693 1.17962 0.90060 0.92285 0.93340 1.19848 1.43375 0.95629 0.93857 0.89696 1.26881 0.93957 0.96395 1.01438 1.69888 1.34897 1.18749 1.21600 0.85232 0.79296 0.78840 0.76263 1.18496 1.19697 1.17500 1.21457 1.01883 0.94392 0.97653 0.92243 0.92309 0.93023 0.90752 0.92655 0.92102 0.92895 0.92008 0.91711 0.90063 0.90082 0.92823 0.93119 0.74837 0.84430 0.84203 0.87279 0.90308 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.95 71.98 0.64 -1.26 16 2 C -0.09 -1.23 2.92 -10.79 -0.03 -1.26 16 3 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 4 C -0.11 -1.73 4.68 30.60 0.14 -1.59 16 5 C -0.12 -2.07 5.08 30.59 0.16 -1.92 16 6 C 0.12 3.17 5.67 86.38 0.49 3.66 16 7 N -0.71 -22.80 5.51 -465.93 -2.57 -25.36 16 8 C 0.56 25.10 7.77 86.80 0.67 25.78 16 9 O -0.59 -31.80 16.33 -3.86 -0.06 -31.86 16 10 C -0.14 -6.73 5.87 -20.13 -0.12 -6.84 16 11 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 12 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 13 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16 14 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 15 C -0.50 -27.43 9.05 23.47 0.21 -27.21 16 16 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 17 C 0.03 1.50 5.14 85.25 0.44 1.93 16 18 N -0.83 -46.86 10.96 21.82 0.24 -46.62 16 19 Si 0.98 40.11 29.59 68.60 2.03 42.14 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 C -0.13 -7.54 8.24 23.01 0.19 -7.35 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.74 6.57 -2.38 -0.02 0.72 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.29 6.57 -2.38 -0.02 1.27 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.41 10.45 6.49 -92.71 -0.60 9.85 16 38 H 0.14 4.02 6.38 -2.91 -0.02 4.00 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 42 H 0.10 6.17 5.74 -2.91 -0.02 6.16 16 Total: -1.00 -69.22 344.81 4.04 -65.17 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.40 Total: 31.29 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.00 Total: -34.75 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -2.33 Total: -71.99 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.06 Total: -31.86 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -69.22 4.04 -65.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298631024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.665 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds