Wall clock time and date at job start Mon Mar 30 2020 02:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 C 1.50697 * 109.46905 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.84653 * 270.32041 * 4 3 2 6 6 C 1.37934 * 120.15242 * 180.28114 * 5 4 3 7 7 C 1.39649 * 119.84636 * 359.42157 * 6 5 4 8 8 C 1.47724 * 120.15250 * 180.30276 * 7 6 5 9 9 O 1.21593 * 119.99796 * 308.49118 * 8 7 6 10 10 N 1.34775 * 120.00363 * 128.49684 * 8 7 6 11 11 C 1.36864 * 120.00042 * 186.98920 * 10 8 7 12 12 H 1.08003 * 119.99948 * 56.44907 * 11 10 8 13 13 C 1.39047 * 120.00297 * 236.44556 * 11 10 8 14 14 N 1.31359 * 119.99996 * 41.94107 * 13 11 10 15 15 Si 1.86805 * 120.00241 * 221.95247 * 13 11 10 16 16 H 1.48492 * 109.47287 * 89.99205 * 15 13 11 17 17 H 1.48503 * 109.46907 * 209.99752 * 15 13 11 18 18 H 1.48500 * 109.46724 * 329.99108 * 15 13 11 19 19 C 1.46505 * 119.99546 * 6.98783 * 10 8 7 20 20 C 1.52993 * 109.47049 * 102.21287 * 19 10 8 21 21 C 1.52998 * 109.47031 * 186.43283 * 20 19 10 22 22 C 1.39651 * 119.69882 * 0.27628 * 7 6 5 23 23 C 1.37942 * 119.84453 * 0.02562 * 22 7 6 24 24 H 1.09008 * 109.46566 * 300.00147 * 1 2 3 25 25 H 1.08997 * 109.47316 * 59.99798 * 1 2 3 26 26 H 1.08992 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46944 * 240.00312 * 2 1 3 28 28 H 1.08997 * 109.47316 * 120.00202 * 2 1 3 29 29 H 1.08999 * 109.46997 * 60.00345 * 3 2 1 30 30 H 1.08996 * 109.46952 * 299.99793 * 3 2 1 31 31 H 1.08006 * 119.92210 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.08036 * 179.69718 * 6 5 4 33 33 H 0.97003 * 120.00115 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.46641 * 222.20747 * 19 10 8 35 35 H 1.08999 * 109.47288 * 342.20366 * 19 10 8 36 36 H 1.09004 * 109.46901 * 306.42844 * 20 19 10 37 37 H 1.09002 * 109.47791 * 66.42877 * 20 19 10 38 38 H 1.09001 * 109.47331 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47229 * 299.99187 * 21 20 19 40 40 H 1.09001 * 109.47401 * 59.99706 * 21 20 19 41 41 H 1.07999 * 120.07816 * 180.02562 * 22 7 6 42 42 H 1.07998 * 119.92198 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2362 1.4356 1.1993 6 6 5.6155 1.4414 1.2062 7 6 6.3165 1.4420 -0.0016 8 6 7.7937 1.4414 -0.0022 9 8 8.4022 2.2649 0.6536 10 7 8.4670 0.5282 -0.7297 11 6 9.8281 0.4344 -0.6201 12 1 10.2815 0.2623 0.3449 13 6 10.6270 0.5607 -1.7511 14 7 10.3560 1.4822 -2.6471 15 14 12.0856 -0.5803 -1.9965 16 1 11.6496 -1.7874 -2.7434 17 1 13.1411 0.1245 -2.7675 18 1 12.6256 -0.9849 -0.6736 19 6 7.7420 -0.3640 -1.6377 20 6 7.9012 0.1328 -3.0759 21 6 7.0165 -0.7013 -4.0045 22 6 5.6146 1.4426 -1.2090 23 6 4.2352 1.4431 -1.2011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6928 1.4298 2.1327 32 1 6.1522 1.4409 2.1434 33 1 10.9136 1.5706 -3.4360 34 1 8.1461 -1.3730 -1.5550 35 1 6.6851 -0.3730 -1.3712 36 1 7.6032 1.1797 -3.1337 37 1 8.9430 0.0342 -3.3812 38 1 7.1296 -0.3470 -5.0292 39 1 7.3145 -1.7481 -3.9468 40 1 5.9747 -0.6026 -3.6993 41 1 6.1506 1.4426 -2.1466 42 1 3.6912 1.4440 -2.1340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299208745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:57 Heat of formation + Delta-G solvation = -19.234894 kcal Electronic energy + Delta-G solvation = -21562.651514 eV Core-core repulsion = 18507.343657 eV Total energy + Delta-G solvation = -3055.307856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.59504 -37.83824 -35.30339 -34.91313 -32.52297 -31.54989 -30.78017 -30.56375 -26.87591 -25.67781 -24.53047 -22.35995 -22.27563 -20.97089 -20.70710 -19.27876 -17.00273 -16.33431 -15.76518 -15.42930 -14.93620 -14.53192 -14.32985 -14.20996 -13.73532 -13.59858 -13.21245 -13.10128 -12.90482 -12.52737 -12.25936 -12.08449 -11.96602 -11.72471 -11.42633 -11.31466 -11.10064 -11.00376 -10.87625 -10.76455 -10.73823 -10.54598 -10.35357 -10.24246 -9.86677 -8.70260 -8.54748 -8.30270 -8.07116 -7.27792 -6.38348 -3.99856 1.51712 1.76007 3.16927 3.28829 3.32827 3.80728 4.18798 4.31587 4.75970 4.78636 4.85266 4.91268 5.01447 5.20232 5.30721 5.40875 5.48211 5.58282 5.66667 5.72120 5.75241 5.80819 5.84091 5.87663 5.88296 6.06063 6.11846 6.17104 6.20330 6.33606 6.37797 6.47975 6.50248 6.63014 6.73527 6.85729 6.95761 7.03059 7.30758 7.40948 7.60501 8.45468 8.59857 9.25213 9.36283 10.11518 10.58950 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.004739 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.009744 B = 5907.122423 C = 6514.635455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.085 4.085 5 C -0.126 4.126 6 C -0.082 4.082 7 C -0.101 4.101 8 C 0.504 3.496 9 O -0.562 6.562 10 N -0.436 5.436 11 C -0.355 4.355 12 H 0.082 0.918 13 C 0.076 3.924 14 N -0.811 5.811 15 Si 0.883 3.117 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.106 3.894 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.094 4.094 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.266 0.734 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.135 0.865 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 -4.472 -0.402 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.144 4.144 6 C -0.101 4.101 7 C -0.105 4.105 8 C 0.292 3.708 9 O -0.443 6.443 10 N -0.156 5.156 11 C -0.481 4.481 12 H 0.100 0.900 13 C -0.136 4.136 14 N -0.442 5.442 15 Si 0.708 3.292 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.018 4.018 20 C -0.175 4.175 21 C -0.209 4.209 22 C -0.112 4.112 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.152 0.848 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.567 -3.966 -0.255 16.066 hybrid contribution 0.777 -0.489 -0.399 1.001 sum -14.790 -4.455 -0.654 15.461 Atomic orbital electron populations 1.21792 0.95959 1.01516 1.01688 1.21520 0.95312 0.96342 1.02543 1.20605 0.91231 0.97127 1.02556 1.19890 0.95210 1.00104 0.93271 1.20865 0.93826 1.02483 0.97268 1.21187 0.93662 0.97641 0.97561 1.20545 0.95720 1.00516 0.93683 1.18696 0.85343 0.81996 0.84733 1.90628 1.69311 1.38042 1.46356 1.43256 1.06226 1.28660 1.37422 1.18858 0.79932 1.54159 0.95183 0.89998 1.25406 0.97381 0.93904 0.96902 1.70412 1.38899 1.23670 1.11207 0.86671 0.81707 0.81842 0.78975 1.20029 1.21188 1.19044 1.21794 0.95673 0.94089 0.90195 1.22100 1.01913 0.98958 0.94547 1.21821 0.99518 1.00113 0.99454 1.21662 0.93980 0.97289 0.98261 1.20897 0.93924 1.02387 0.97250 0.92831 0.92792 0.92822 0.91770 0.91832 0.91278 0.91243 0.86349 0.85864 0.92335 0.92322 0.92051 0.92010 0.89563 0.93428 0.93368 0.93569 0.84776 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.08 -0.80 5.34 -27.88 -0.15 -0.95 16 4 C -0.08 -1.15 5.14 -104.52 -0.54 -1.69 16 5 C -0.13 -1.85 9.68 -39.64 -0.38 -2.24 16 6 C -0.08 -1.48 9.75 -39.17 -0.38 -1.86 16 7 C -0.10 -2.11 4.94 -104.97 -0.52 -2.63 16 8 C 0.50 13.12 7.15 -12.39 -0.09 13.03 16 9 O -0.56 -16.97 17.03 5.28 0.09 -16.88 16 10 N -0.44 -11.18 2.56 -115.93 -0.30 -11.47 16 11 C -0.36 -9.94 8.41 -15.01 -0.13 -10.07 16 12 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 13 C 0.08 2.01 3.94 -17.45 -0.07 1.94 16 14 N -0.81 -21.96 11.52 55.50 0.64 -21.32 16 15 Si 0.88 19.89 29.69 -169.99 -5.05 14.84 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.11 2.24 4.80 -4.04 -0.02 2.22 16 20 C -0.14 -2.76 4.39 -26.74 -0.12 -2.88 16 21 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 22 C -0.09 -1.69 7.43 -39.16 -0.29 -1.98 16 23 C -0.13 -1.86 9.68 -39.64 -0.38 -2.25 16 24 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.06 1.17 4.96 -51.93 -0.26 0.91 16 36 H 0.06 1.34 6.52 -51.93 -0.34 1.00 16 37 H 0.09 1.97 5.41 -51.93 -0.28 1.69 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.13 2.49 4.79 -52.49 -0.25 2.24 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -31.45 340.14 -8.57 -40.03 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.60 Total: 3.06 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.49 Total: -13.39 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.34 Total: -32.79 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.09 Total: -16.88 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.05 Total: 14.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.45 -8.57 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299208745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.792 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds