Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47039 * 2 1 4 4 C 1.50697 * 109.46905 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.84653 * 270.32041 * 4 3 2 6 6 C 1.37934 * 120.15242 * 180.28114 * 5 4 3 7 7 C 1.39649 * 119.84636 * 359.42157 * 6 5 4 8 8 C 1.47724 * 120.15250 * 180.30276 * 7 6 5 9 9 O 1.21593 * 119.99796 * 308.49118 * 8 7 6 10 10 N 1.34775 * 120.00363 * 128.49684 * 8 7 6 11 11 C 1.36864 * 120.00042 * 186.98920 * 10 8 7 12 12 H 1.08003 * 119.99948 * 56.44907 * 11 10 8 13 13 C 1.39047 * 120.00297 * 236.44556 * 11 10 8 14 14 N 1.31359 * 119.99996 * 41.94107 * 13 11 10 15 15 Si 1.86805 * 120.00241 * 221.95247 * 13 11 10 16 16 H 1.48492 * 109.47287 * 89.99205 * 15 13 11 17 17 H 1.48503 * 109.46907 * 209.99752 * 15 13 11 18 18 H 1.48500 * 109.46724 * 329.99108 * 15 13 11 19 19 C 1.46505 * 119.99546 * 6.98783 * 10 8 7 20 20 C 1.52993 * 109.47049 * 102.21287 * 19 10 8 21 21 C 1.52998 * 109.47031 * 186.43283 * 20 19 10 22 22 C 1.39651 * 119.69882 * 0.27628 * 7 6 5 23 23 C 1.37942 * 119.84453 * 0.02562 * 22 7 6 24 24 H 1.09008 * 109.46566 * 300.00147 * 1 2 3 25 25 H 1.08997 * 109.47316 * 59.99798 * 1 2 3 26 26 H 1.08992 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46944 * 240.00312 * 2 1 3 28 28 H 1.08997 * 109.47316 * 120.00202 * 2 1 3 29 29 H 1.08999 * 109.46997 * 60.00345 * 3 2 1 30 30 H 1.08996 * 109.46952 * 299.99793 * 3 2 1 31 31 H 1.08006 * 119.92210 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.08036 * 179.69718 * 6 5 4 33 33 H 0.97003 * 120.00115 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.46641 * 222.20747 * 19 10 8 35 35 H 1.08999 * 109.47288 * 342.20366 * 19 10 8 36 36 H 1.09004 * 109.46901 * 306.42844 * 20 19 10 37 37 H 1.09002 * 109.47791 * 66.42877 * 20 19 10 38 38 H 1.09001 * 109.47331 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47229 * 299.99187 * 21 20 19 40 40 H 1.09001 * 109.47401 * 59.99706 * 21 20 19 41 41 H 1.07999 * 120.07816 * 180.02562 * 22 7 6 42 42 H 1.07998 * 119.92198 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2362 1.4356 1.1993 6 6 5.6155 1.4414 1.2062 7 6 6.3165 1.4420 -0.0016 8 6 7.7937 1.4414 -0.0022 9 8 8.4022 2.2649 0.6536 10 7 8.4670 0.5282 -0.7297 11 6 9.8281 0.4344 -0.6201 12 1 10.2815 0.2623 0.3449 13 6 10.6270 0.5607 -1.7511 14 7 10.3560 1.4822 -2.6471 15 14 12.0856 -0.5803 -1.9965 16 1 11.6496 -1.7874 -2.7434 17 1 13.1411 0.1245 -2.7675 18 1 12.6256 -0.9849 -0.6736 19 6 7.7420 -0.3640 -1.6377 20 6 7.9012 0.1328 -3.0759 21 6 7.0165 -0.7013 -4.0045 22 6 5.6146 1.4426 -1.2090 23 6 4.2352 1.4431 -1.2011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6928 1.4298 2.1327 32 1 6.1522 1.4409 2.1434 33 1 10.9136 1.5706 -3.4360 34 1 8.1461 -1.3730 -1.5550 35 1 6.6851 -0.3730 -1.3712 36 1 7.6032 1.1797 -3.1337 37 1 8.9430 0.0342 -3.3812 38 1 7.1296 -0.3470 -5.0292 39 1 7.3145 -1.7481 -3.9468 40 1 5.9747 -0.6026 -3.6993 41 1 6.1506 1.4426 -2.1466 42 1 3.6912 1.4440 -2.1340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299208745.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = -36.367606 kcal Electronic energy + Delta-G solvation = -21563.394444 eV Core-core repulsion = 18507.343657 eV Total energy + Delta-G solvation = -3056.050786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16396 -39.41115 -37.22562 -35.87962 -34.36213 -33.34468 -31.97955 -31.87083 -28.16162 -27.26142 -26.21530 -23.58741 -23.53278 -22.34447 -21.91420 -20.93291 -18.99156 -18.03987 -17.26326 -16.81479 -16.53632 -16.08995 -15.77842 -15.48780 -15.20002 -14.87745 -14.57997 -14.37438 -14.18634 -13.95176 -13.77925 -13.46674 -13.33715 -13.03225 -12.81886 -12.77344 -12.62885 -12.52637 -12.12552 -12.04516 -11.97946 -11.86234 -11.83603 -11.48363 -11.38450 -10.69838 -10.22998 -9.84687 -9.53472 -9.27925 -8.41876 -6.14326 0.15674 0.46955 1.35273 1.41145 1.52689 2.08120 2.30118 2.71813 2.85275 3.09563 3.82143 3.91302 3.99311 4.09358 4.21212 4.26771 4.33001 4.37236 4.50217 4.56526 4.60708 4.62366 4.73948 4.81533 4.85565 4.93436 5.04080 5.08852 5.09986 5.13737 5.27616 5.32241 5.34475 5.39437 5.42219 5.51912 5.55662 5.58495 5.69054 5.77803 6.05328 6.27882 6.62464 7.19164 7.37507 8.10362 8.55180 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.004739 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.009744 B = 5907.122423 C = 6514.635455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.075 4.075 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.095 4.095 7 C -0.136 4.136 8 C 0.487 3.513 9 O -0.627 6.627 10 N -0.443 5.443 11 C -0.398 4.398 12 H 0.051 0.949 13 C 0.047 3.953 14 N -0.837 5.837 15 Si 0.957 3.043 16 H -0.254 1.254 17 H -0.279 1.279 18 H -0.271 1.271 19 C 0.107 3.893 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.275 0.725 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 -5.906 -1.862 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.112 4.112 4 C -0.067 4.067 5 C -0.135 4.135 6 C -0.114 4.114 7 C -0.139 4.139 8 C 0.278 3.722 9 O -0.514 6.514 10 N -0.161 5.161 11 C -0.524 4.524 12 H 0.069 0.931 13 C -0.164 4.164 14 N -0.468 5.468 15 Si 0.779 3.221 16 H -0.179 1.179 17 H -0.204 1.204 18 H -0.196 1.196 19 C -0.015 4.015 20 C -0.166 4.166 21 C -0.198 4.198 22 C -0.119 4.119 23 C -0.135 4.135 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.723 -5.436 -1.749 19.574 hybrid contribution 1.661 0.019 0.086 1.663 sum -17.062 -5.416 -1.663 17.978 Atomic orbital electron populations 1.21766 0.94566 1.02056 1.02317 1.21502 0.96493 0.95367 1.02239 1.20700 0.88097 0.98207 1.04201 1.20363 0.97356 0.96764 0.92239 1.21181 0.92106 1.00765 0.99415 1.21218 0.95379 0.98685 0.96159 1.20180 0.92511 1.05144 0.96078 1.19590 0.87926 0.81078 0.83648 1.90545 1.71409 1.40535 1.48912 1.43560 1.05947 1.28928 1.37687 1.18831 0.81776 1.56934 0.94874 0.93122 1.26178 1.00074 0.94332 0.95847 1.70430 1.40352 1.24347 1.11672 0.85569 0.77948 0.79897 0.78690 1.17872 1.20437 1.19553 1.21948 0.96421 0.93237 0.89936 1.21919 1.01243 0.98594 0.94799 1.21730 0.99596 0.99738 0.98751 1.21589 0.95506 0.98224 0.96567 1.21232 0.92306 1.00600 0.99324 0.92256 0.92145 0.92416 0.92055 0.92303 0.89774 0.89613 0.83081 0.87149 0.91551 0.91979 0.89774 0.94316 0.92456 0.92189 0.92111 0.91361 0.85802 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 3 C -0.07 -1.17 5.34 29.85 0.16 -1.01 16 4 C -0.07 -1.58 5.14 -19.80 -0.10 -1.68 16 5 C -0.12 -3.16 9.68 22.23 0.22 -2.95 16 6 C -0.10 -3.53 9.75 22.54 0.22 -3.31 16 7 C -0.14 -5.88 4.94 -20.09 -0.10 -5.98 16 8 C 0.49 27.19 7.15 86.75 0.62 27.81 16 9 O -0.63 -41.20 17.03 -4.01 -0.07 -41.27 16 10 N -0.44 -24.09 2.56 -638.95 -1.64 -25.73 16 11 C -0.40 -23.67 8.41 84.10 0.71 -22.97 16 12 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 13 C 0.05 2.55 3.94 84.96 0.33 2.88 16 14 N -0.84 -46.85 11.52 21.68 0.25 -46.60 16 15 Si 0.96 41.83 29.69 68.60 2.04 43.87 16 16 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C 0.11 4.62 4.80 86.38 0.41 5.03 16 20 C -0.13 -5.16 4.39 30.59 0.13 -5.03 16 21 C -0.14 -4.05 9.91 71.98 0.71 -3.34 16 22 C -0.10 -3.58 7.43 22.54 0.17 -3.42 16 23 C -0.12 -3.08 9.68 22.23 0.22 -2.87 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.06 2.58 8.13 -2.38 -0.02 2.56 16 35 H 0.08 3.21 4.96 -2.39 -0.01 3.20 16 36 H 0.04 1.73 6.52 -2.38 -0.02 1.71 16 37 H 0.06 2.65 5.41 -2.39 -0.01 2.64 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.12 4.63 4.79 -2.91 -0.01 4.62 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -74.99 340.14 6.17 -68.82 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.99 Total: 20.22 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.59 Total: -19.31 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.39 Total: -72.33 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.07 Total: -41.27 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.04 Total: 43.87 kcal Total: -74.99 6.17 -68.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299208745.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.453 kcal (2) G-P(sol) polarization free energy of solvation -74.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds