Wall clock time and date at job start Mon Mar 30 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47152 * 2 1 4 4 C 1.50700 * 109.47108 * 120.00115 * 2 1 3 5 5 C 1.38231 * 120.00154 * 119.99582 * 4 2 1 6 6 C 1.38231 * 120.00308 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.00017 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00327 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47663 * 90.00170 * 8 7 6 10 10 C 1.50703 * 109.47633 * 180.02562 * 9 8 7 11 11 O 1.21294 * 119.99648 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00131 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99881 * 0.02562 * 12 10 9 14 14 C 1.37094 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.08001 * 119.99757 * 22.41032 * 14 12 10 16 16 C 1.38948 * 120.00262 * 202.40712 * 14 12 10 17 17 N 1.31423 * 119.99634 * 11.59496 * 16 14 12 18 18 Si 1.86802 * 120.00420 * 191.59261 * 16 14 12 19 19 H 1.48495 * 109.46845 * 90.00018 * 18 16 14 20 20 H 1.48496 * 109.47178 * 210.00509 * 18 16 14 21 21 H 1.48502 * 109.46912 * 330.00026 * 18 16 14 22 22 C 1.38237 * 119.99604 * 0.25913 * 7 6 5 23 23 C 1.38232 * 119.99791 * 300.02394 * 4 2 1 24 24 H 1.08999 * 109.47385 * 60.00198 * 1 2 3 25 25 H 1.09007 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47520 * 300.00159 * 1 2 3 27 27 H 1.09004 * 109.47053 * 239.99591 * 2 1 3 28 28 H 1.09009 * 109.47242 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47283 * 299.99906 * 3 2 1 30 30 H 1.09004 * 109.47475 * 59.99849 * 3 2 1 31 31 H 1.08003 * 119.99926 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.00245 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47026 * 210.00425 * 8 7 6 34 34 H 1.09004 * 109.46866 * 329.99661 * 8 7 6 35 35 H 1.09005 * 109.47108 * 300.00205 * 9 8 7 36 36 H 1.09004 * 109.47395 * 59.99815 * 9 8 7 37 37 H 1.08998 * 109.47396 * 92.16051 * 13 12 10 38 38 H 1.09004 * 109.47077 * 212.15673 * 13 12 10 39 39 H 1.09001 * 109.47316 * 332.15640 * 13 12 10 40 40 H 0.96997 * 119.99562 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99801 * 179.72540 * 22 7 6 42 42 H 1.08003 * 120.00459 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8269 -1.8344 1.1036 6 6 3.2873 -2.4864 2.2323 7 6 2.9525 -2.0147 3.4878 8 6 3.4539 -2.7257 4.7182 9 6 4.8014 -2.1338 5.1360 10 6 5.3030 -2.8453 6.3661 11 8 4.6474 -3.7385 6.8598 12 7 6.4806 -2.4900 6.9171 13 6 7.2727 -1.4117 6.3204 14 6 6.9372 -3.1376 8.0358 15 1 6.5790 -4.1293 8.2696 16 6 7.8608 -2.5182 8.8688 17 7 8.1258 -1.2396 8.7203 18 14 8.7258 -3.5028 10.1999 19 1 9.9794 -4.0806 9.6525 20 1 9.0491 -2.6122 11.3433 21 1 7.8363 -4.5984 10.6622 22 6 2.1530 -0.8942 3.6146 23 6 1.6979 -0.2384 2.4859 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.0881 -2.2032 0.1227 32 1 3.9078 -3.3647 2.1332 33 1 2.7353 -2.6007 5.5283 34 1 3.5749 -3.7870 4.5006 35 1 5.5200 -2.2589 4.3260 36 1 4.6803 -1.0726 5.3537 37 1 7.0120 -0.4649 6.7933 38 1 8.3332 -1.6134 6.4715 39 1 7.0623 -1.3544 5.2524 40 1 8.7702 -0.8071 9.3020 41 1 1.8878 -0.5282 4.5956 42 1 1.0770 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299501160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:02 Heat of formation + Delta-G solvation = -30.483079 kcal Electronic energy + Delta-G solvation = -20545.809542 eV Core-core repulsion = 17490.013928 eV Total energy + Delta-G solvation = -3055.795614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68767 -38.39485 -35.96632 -34.65744 -32.69022 -31.51560 -30.83762 -28.81987 -27.34491 -26.29167 -25.01493 -23.62110 -22.71936 -21.50303 -19.88606 -18.61573 -16.85128 -16.49815 -15.96726 -15.44806 -14.97250 -14.66604 -14.35778 -14.08105 -13.95277 -13.70759 -13.62570 -13.28229 -12.82969 -12.69892 -12.48242 -12.15363 -11.75019 -11.62551 -11.50691 -11.31454 -11.25979 -11.18080 -11.07281 -10.81037 -10.75797 -10.58939 -10.43153 -10.31590 -10.16142 -8.99232 -8.81858 -8.50688 -8.21187 -7.63864 -6.27111 -3.83770 1.43678 1.50481 3.18566 3.26816 3.32664 3.82661 3.96169 4.17725 4.53643 4.64905 4.87071 5.00876 5.03774 5.09451 5.16529 5.25718 5.27238 5.40499 5.47608 5.55111 5.61580 5.68168 5.71667 5.75842 5.78595 5.91679 6.02124 6.03686 6.10008 6.17738 6.20201 6.39133 6.47220 6.55621 6.64447 6.67229 6.88045 6.93250 7.12614 7.26815 7.60244 8.17923 8.53425 9.23610 9.48323 10.04432 10.76573 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.003058 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.883707 B = 9153.774522 C = 9449.224069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.090 4.090 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.073 4.073 8 C -0.063 4.063 9 C -0.121 4.121 10 C 0.445 3.555 11 O -0.593 6.593 12 N -0.450 5.450 13 C 0.113 3.887 14 C -0.305 4.305 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.885 5.885 18 Si 0.926 3.074 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.121 0.879 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 5.273 -16.840 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.134 4.134 7 C -0.074 4.074 8 C -0.101 4.101 9 C -0.161 4.161 10 C 0.234 3.766 11 O -0.478 6.478 12 N -0.168 5.168 13 C -0.031 4.031 14 C -0.433 4.433 15 H 0.116 0.884 16 C -0.174 4.174 17 N -0.525 5.525 18 Si 0.753 3.247 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.133 4.133 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.950 4.988 -16.487 19.893 hybrid contribution 0.690 -0.166 0.697 0.995 sum -9.261 4.822 -15.790 18.930 Atomic orbital electron populations 1.21856 0.94554 1.01936 1.01738 1.20091 0.95775 0.95987 0.95498 1.21858 1.01345 0.95193 1.01738 1.19769 0.98633 0.96134 0.94479 1.20991 0.98483 0.95759 0.98332 1.21075 1.00133 1.00194 0.91951 1.20108 0.96524 0.95542 0.95180 1.20326 0.96524 0.99310 0.93911 1.21488 0.96619 1.00565 0.97456 1.20109 0.81877 0.87184 0.87462 1.90503 1.57306 1.34071 1.65954 1.43617 1.16248 1.31958 1.25016 1.21492 0.97188 0.91447 0.92928 1.19673 1.22735 1.00256 1.00638 0.88431 1.25344 0.98415 0.95456 0.98221 1.70009 1.34178 1.08843 1.39455 0.85919 0.79475 0.79351 0.79918 1.20430 1.20978 1.19398 1.21099 0.98059 0.95538 0.98603 1.20904 1.00482 0.99832 0.91951 0.92626 0.92591 0.92454 0.90746 0.92477 0.92626 0.92435 0.86521 0.86099 0.90503 0.90573 0.90630 0.90417 0.92477 0.91404 0.95504 0.92349 0.86052 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.01 37.16 0.33 -0.78 16 2 C -0.06 -0.48 3.09 -91.78 -0.28 -0.76 16 3 C -0.14 -1.15 9.01 37.15 0.33 -0.82 16 4 C -0.09 -0.99 4.78 -104.63 -0.50 -1.50 16 5 C -0.12 -1.36 9.67 -39.59 -0.38 -1.74 16 6 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 7 C -0.07 -1.05 5.13 -104.63 -0.54 -1.59 16 8 C -0.06 -1.06 4.63 -27.89 -0.13 -1.19 16 9 C -0.12 -2.26 4.20 -27.89 -0.12 -2.38 16 10 C 0.45 11.02 7.63 -10.99 -0.08 10.94 16 11 O -0.59 -16.62 15.67 5.55 0.09 -16.53 16 12 N -0.45 -11.81 3.02 -122.19 -0.37 -12.18 16 13 C 0.11 2.59 8.52 59.85 0.51 3.10 16 14 C -0.30 -8.70 9.29 -14.94 -0.14 -8.83 16 15 H 0.10 2.91 7.41 -52.49 -0.39 2.52 16 16 C 0.03 0.76 5.11 -17.46 -0.09 0.67 16 17 N -0.89 -24.00 10.62 55.50 0.59 -23.41 16 18 Si 0.93 21.12 29.57 -169.99 -5.03 16.09 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 16 23 C -0.11 -1.32 8.71 -39.58 -0.34 -1.67 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 27 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 31 H 0.12 1.11 7.95 -52.48 -0.42 0.69 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 34 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 35 H 0.08 1.29 7.41 -51.93 -0.38 0.91 16 36 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 37 H 0.06 1.35 7.54 -51.93 -0.39 0.96 16 38 H 0.07 1.62 7.06 -51.93 -0.37 1.26 16 39 H 0.03 0.51 6.36 -51.93 -0.33 0.18 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.12 1.15 7.10 -52.48 -0.37 0.77 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -31.21 343.06 -8.50 -39.71 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.76 Total: 1.47 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.20 Total: -10.33 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.22 Total: -35.58 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.09 Total: -16.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.21 -8.50 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299501160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.231 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds