Wall clock time and date at job start Mon Mar 30 2020 02:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47152 * 2 1 4 4 C 1.50700 * 109.47108 * 120.00115 * 2 1 3 5 5 C 1.38231 * 120.00154 * 119.99582 * 4 2 1 6 6 C 1.38231 * 120.00308 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.00017 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00327 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47663 * 90.00170 * 8 7 6 10 10 C 1.50703 * 109.47633 * 180.02562 * 9 8 7 11 11 O 1.21294 * 119.99648 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00131 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99881 * 0.02562 * 12 10 9 14 14 C 1.37094 * 120.00018 * 180.02562 * 12 10 9 15 15 H 1.08001 * 119.99757 * 22.41032 * 14 12 10 16 16 C 1.38948 * 120.00262 * 202.40712 * 14 12 10 17 17 N 1.31423 * 119.99634 * 11.59496 * 16 14 12 18 18 Si 1.86802 * 120.00420 * 191.59261 * 16 14 12 19 19 H 1.48495 * 109.46845 * 90.00018 * 18 16 14 20 20 H 1.48496 * 109.47178 * 210.00509 * 18 16 14 21 21 H 1.48502 * 109.46912 * 330.00026 * 18 16 14 22 22 C 1.38237 * 119.99604 * 0.25913 * 7 6 5 23 23 C 1.38232 * 119.99791 * 300.02394 * 4 2 1 24 24 H 1.08999 * 109.47385 * 60.00198 * 1 2 3 25 25 H 1.09007 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47520 * 300.00159 * 1 2 3 27 27 H 1.09004 * 109.47053 * 239.99591 * 2 1 3 28 28 H 1.09009 * 109.47242 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47283 * 299.99906 * 3 2 1 30 30 H 1.09004 * 109.47475 * 59.99849 * 3 2 1 31 31 H 1.08003 * 119.99926 * 0.02562 * 5 4 2 32 32 H 1.08001 * 120.00245 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47026 * 210.00425 * 8 7 6 34 34 H 1.09004 * 109.46866 * 329.99661 * 8 7 6 35 35 H 1.09005 * 109.47108 * 300.00205 * 9 8 7 36 36 H 1.09004 * 109.47395 * 59.99815 * 9 8 7 37 37 H 1.08998 * 109.47396 * 92.16051 * 13 12 10 38 38 H 1.09004 * 109.47077 * 212.15673 * 13 12 10 39 39 H 1.09001 * 109.47316 * 332.15640 * 13 12 10 40 40 H 0.96997 * 119.99562 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99801 * 179.72540 * 22 7 6 42 42 H 1.08003 * 120.00459 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8269 -1.8344 1.1036 6 6 3.2873 -2.4864 2.2323 7 6 2.9525 -2.0147 3.4878 8 6 3.4539 -2.7257 4.7182 9 6 4.8014 -2.1338 5.1360 10 6 5.3030 -2.8453 6.3661 11 8 4.6474 -3.7385 6.8598 12 7 6.4806 -2.4900 6.9171 13 6 7.2727 -1.4117 6.3204 14 6 6.9372 -3.1376 8.0358 15 1 6.5790 -4.1293 8.2696 16 6 7.8608 -2.5182 8.8688 17 7 8.1258 -1.2396 8.7203 18 14 8.7258 -3.5028 10.1999 19 1 9.9794 -4.0806 9.6525 20 1 9.0491 -2.6122 11.3433 21 1 7.8363 -4.5984 10.6622 22 6 2.1530 -0.8942 3.6146 23 6 1.6979 -0.2384 2.4859 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.0881 -2.2032 0.1227 32 1 3.9078 -3.3647 2.1332 33 1 2.7353 -2.6007 5.5283 34 1 3.5749 -3.7870 4.5006 35 1 5.5200 -2.2589 4.3260 36 1 4.6803 -1.0726 5.3537 37 1 7.0120 -0.4649 6.7933 38 1 8.3332 -1.6134 6.4715 39 1 7.0623 -1.3544 5.2524 40 1 8.7702 -0.8071 9.3020 41 1 1.8878 -0.5282 4.5956 42 1 1.0770 0.6397 2.5851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299501160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:01 Heat of formation + Delta-G solvation = -46.151294 kcal Electronic energy + Delta-G solvation = -20546.488967 eV Core-core repulsion = 17490.013928 eV Total energy + Delta-G solvation = -3056.475039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76882 -40.17699 -37.01129 -36.52739 -34.05411 -33.45818 -31.77768 -30.05539 -28.17500 -27.92778 -26.70049 -25.12661 -23.69753 -22.56334 -20.76105 -20.44009 -18.90237 -18.01073 -17.18272 -16.68103 -16.58432 -16.03060 -15.89697 -15.76459 -14.88622 -14.64260 -14.48490 -14.43141 -14.23736 -14.03871 -13.58276 -13.41003 -13.25606 -13.13010 -13.01324 -12.71393 -12.59850 -12.54634 -12.31332 -12.20220 -12.12916 -11.91543 -11.81266 -11.48128 -11.42459 -11.02652 -10.37359 -9.76271 -9.70395 -9.34495 -8.33326 -5.99381 0.46404 0.56039 1.36616 1.39666 1.52334 2.02950 2.27372 2.84612 3.08564 3.13345 3.76545 3.87390 3.93937 4.10226 4.19187 4.23391 4.33812 4.37872 4.40794 4.54101 4.60109 4.64252 4.68507 4.82039 4.85666 4.96534 5.02047 5.04234 5.05857 5.10347 5.21877 5.26383 5.29759 5.37703 5.39951 5.43643 5.43815 5.60624 5.79927 5.82536 6.08963 6.17942 6.47944 7.16248 7.47453 8.03426 8.68350 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.003058 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.883707 B = 9153.774522 C = 9449.224069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.052 4.052 9 C -0.106 4.106 10 C 0.434 3.566 11 O -0.635 6.635 12 N -0.467 5.467 13 C 0.123 3.877 14 C -0.346 4.346 15 H 0.070 0.930 16 C -0.005 4.005 17 N -0.898 5.898 18 Si 0.991 3.009 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.277 1.277 22 C -0.126 4.126 23 C -0.116 4.116 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 6.475 -18.650 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.091 4.091 8 C -0.090 4.090 9 C -0.146 4.146 10 C 0.225 3.775 11 O -0.524 6.524 12 N -0.185 5.185 13 C -0.020 4.020 14 C -0.474 4.474 15 H 0.088 0.912 16 C -0.206 4.206 17 N -0.537 5.537 18 Si 0.814 3.186 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.202 1.202 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.140 0.860 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.915 6.221 -18.320 21.740 hybrid contribution 0.631 -0.501 1.210 1.454 sum -9.284 5.720 -17.110 20.289 Atomic orbital electron populations 1.21849 0.93783 1.01852 1.02490 1.20157 0.96353 0.96200 0.94571 1.21853 1.00915 0.94791 1.02478 1.20132 0.97496 0.95716 0.95281 1.21275 0.98082 0.95686 0.98829 1.21207 1.00386 1.00575 0.91921 1.19870 0.98329 0.96459 0.94434 1.20138 0.95181 0.98905 0.94777 1.21421 0.97879 1.00346 0.94913 1.21161 0.81113 0.86609 0.88658 1.90463 1.58375 1.35972 1.67552 1.43913 1.17197 1.32534 1.24893 1.21438 0.95787 0.89741 0.95015 1.19634 1.24822 1.00137 1.02811 0.91180 1.26116 0.98153 0.96485 0.99853 1.70081 1.34023 1.09592 1.39964 0.84971 0.78394 0.77840 0.77352 1.18970 1.19711 1.20168 1.21206 0.98222 0.95526 0.99423 1.21118 1.00369 1.00202 0.91682 0.91072 0.93101 0.92582 0.89742 0.93141 0.91066 0.92598 0.84281 0.85571 0.92220 0.91763 0.88422 0.89124 0.93593 0.92917 0.91397 0.91709 0.86014 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.01 71.98 0.65 -1.16 16 2 C -0.05 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -1.87 9.01 71.98 0.65 -1.23 16 4 C -0.09 -1.69 4.78 -19.87 -0.09 -1.79 16 5 C -0.12 -2.51 9.67 22.27 0.22 -2.30 16 6 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 7 C -0.09 -2.55 5.13 -19.87 -0.10 -2.65 16 8 C -0.05 -1.78 4.63 29.84 0.14 -1.64 16 9 C -0.11 -3.91 4.20 29.85 0.13 -3.78 16 10 C 0.43 21.99 7.63 87.66 0.67 22.66 16 11 O -0.64 -37.13 15.67 -3.07 -0.05 -37.17 16 12 N -0.47 -24.98 3.02 -658.89 -1.99 -26.97 16 13 C 0.12 5.59 8.52 127.77 1.09 6.68 16 14 C -0.35 -20.32 9.29 84.04 0.78 -19.54 16 15 H 0.07 4.40 7.41 -2.91 -0.02 4.37 16 16 C 0.00 -0.25 5.11 84.92 0.43 0.18 16 17 N -0.90 -48.53 10.62 21.66 0.23 -48.30 16 18 Si 0.99 43.40 29.57 68.60 2.03 45.43 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.13 -3.21 9.70 22.27 0.22 -3.00 16 23 C -0.12 -2.47 8.71 22.27 0.19 -2.28 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.72 7.39 -2.39 -0.02 0.71 16 27 H 0.08 1.07 7.88 -2.38 -0.02 1.05 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.75 7.39 -2.38 -0.02 0.73 16 31 H 0.14 2.22 7.95 -2.91 -0.02 2.20 16 32 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.06 2.19 8.04 -2.38 -0.02 2.17 16 34 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 35 H 0.10 3.18 7.41 -2.38 -0.02 3.17 16 36 H 0.09 3.14 8.11 -2.38 -0.02 3.12 16 37 H 0.05 2.16 7.54 -2.39 -0.02 2.14 16 38 H 0.05 2.51 7.06 -2.39 -0.02 2.50 16 39 H 0.07 2.46 6.36 -2.39 -0.02 2.45 16 40 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.13 2.33 7.10 -2.91 -0.02 2.31 16 Total: -1.00 -68.57 343.06 6.34 -62.23 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.98 Total: 18.25 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 5.14 Total: -13.46 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.76 Total: -75.27 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.05 Total: -37.17 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.57 6.34 -62.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299501160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.079 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds