Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46944 * 2 1 4 4 C 1.38286 * 119.96909 * 270.01891 * 3 2 1 5 5 C 1.38247 * 120.11137 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.05347 * 359.97438 * 5 4 3 7 7 C 1.38712 * 119.94652 * 359.97400 * 6 5 4 8 8 O 1.35901 * 120.05763 * 180.29815 * 7 6 5 9 9 C 1.42898 * 116.99691 * 359.73020 * 8 7 6 10 10 C 1.53007 * 109.47073 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47085 * 64.99756 * 10 9 8 12 12 C 1.36942 * 120.00015 * 269.99975 * 11 10 9 13 13 H 1.08001 * 119.99973 * 140.45944 * 12 11 10 14 14 C 1.38811 * 120.00302 * 320.46227 * 12 11 10 15 15 N 1.31626 * 119.99778 * 340.37019 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 160.36429 * 14 12 11 17 17 H 1.48500 * 109.46841 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46683 * 119.99923 * 16 14 12 19 19 H 1.48496 * 109.47271 * 240.00042 * 16 14 12 20 20 C 1.46494 * 120.00037 * 90.00446 * 11 10 9 21 21 C 1.53007 * 117.50092 * 183.28627 * 20 11 10 22 22 C 1.53001 * 60.00081 * 252.50674 * 21 20 11 23 23 C 1.38117 * 119.97394 * 89.99990 * 3 2 1 24 24 H 1.09008 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47247 * 300.00484 * 1 2 3 26 26 H 1.09004 * 109.47138 * 60.00341 * 1 2 3 27 27 H 1.08994 * 109.47553 * 239.99839 * 2 1 3 28 28 H 1.09004 * 109.47138 * 119.99659 * 2 1 3 29 29 H 1.07994 * 119.94501 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.97190 * 180.02562 * 5 4 3 31 31 H 1.08005 * 120.02680 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47291 * 299.99756 * 9 8 7 33 33 H 1.08999 * 109.47487 * 60.00195 * 9 8 7 34 34 H 1.08997 * 109.47204 * 185.00154 * 10 9 8 35 35 H 1.08997 * 109.46419 * 305.00133 * 10 9 8 36 36 H 0.96992 * 119.99617 * 175.01782 * 15 14 12 37 37 H 1.09002 * 115.55227 * 328.99448 * 20 11 10 38 38 H 1.09002 * 117.49672 * 359.97438 * 21 20 11 39 39 H 1.08998 * 117.49870 * 145.02155 * 21 20 11 40 40 H 1.08997 * 117.50428 * 252.50975 * 22 21 20 41 41 H 1.09009 * 117.51757 * 107.47500 * 22 21 20 42 42 H 1.08007 * 120.03082 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0723 -1.1980 5 6 2.7234 3.3755 -1.2014 6 6 2.9554 4.0306 -0.0072 7 6 2.7246 3.3797 1.1958 8 8 2.9462 4.0239 2.3717 9 6 3.4227 5.3689 2.2947 10 6 3.6123 5.9244 3.7077 11 7 4.6720 5.1762 4.3884 12 6 4.3618 4.0587 5.1165 13 1 5.0103 3.1956 5.0838 14 6 3.2139 4.0350 5.8967 15 7 2.6367 5.1632 6.2524 16 14 2.4883 2.4022 6.4415 17 1 3.3193 1.2905 5.9135 18 1 2.4654 2.3412 7.9251 19 1 1.1037 2.2771 5.9195 20 6 6.0635 5.6236 4.2902 21 6 7.1330 4.7573 4.9588 22 6 6.7438 6.1030 5.5741 23 6 2.2623 2.0715 1.1964 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0810 1.5621 -2.1324 30 1 2.9018 3.8822 -2.1382 31 1 3.3154 5.0489 -0.0104 32 1 4.3760 5.3871 1.7666 33 1 2.6981 5.9809 1.7576 34 1 3.8901 6.9768 3.6501 35 1 2.6812 5.8243 4.2654 36 1 1.7958 5.1464 6.7356 37 1 6.3313 6.1263 3.3609 38 1 6.8011 3.8548 5.4721 39 1 8.1045 4.6900 4.4693 40 1 7.4593 6.9210 5.4894 41 1 6.1557 6.0860 6.4918 42 1 2.0827 1.5622 2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299512212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 25.282370 kcal Electronic energy + Delta-G solvation = -21435.339936 eV Core-core repulsion = 18381.962494 eV Total energy + Delta-G solvation = -3053.377443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67809 -37.55259 -36.68869 -33.77183 -33.35963 -31.20493 -29.93239 -28.84094 -27.81671 -24.51373 -23.77420 -22.14561 -21.97536 -21.29520 -20.30513 -19.51116 -17.32708 -16.42891 -15.73361 -15.58376 -15.31926 -15.00513 -14.47214 -14.35730 -13.84070 -13.74207 -13.32801 -12.96164 -12.74870 -12.51223 -12.16376 -11.90825 -11.79402 -11.56386 -11.20405 -11.02879 -10.94162 -10.72962 -10.70411 -10.58445 -10.38206 -10.07017 -10.04512 -9.70028 -9.58312 -9.25077 -8.53556 -8.40138 -7.69138 -6.50161 -5.73238 -3.37611 1.60047 1.81911 3.40241 3.48324 3.51812 3.93699 4.06607 4.51429 4.87699 4.96485 5.02264 5.18540 5.21704 5.36492 5.38738 5.42751 5.50519 5.61927 5.76997 5.78011 5.87208 5.89816 5.93691 5.97461 6.08159 6.11013 6.20871 6.26523 6.32342 6.39111 6.52328 6.61672 6.66161 6.68097 6.78446 6.86158 7.06531 7.15483 7.25950 7.52485 7.86892 8.14725 8.55854 9.18718 9.81080 10.37177 11.23785 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.005801 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.412508 B = 4825.868064 C = 5833.652178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.174 4.174 5 C -0.080 4.080 6 C -0.224 4.224 7 C 0.149 3.851 8 O -0.273 6.273 9 C 0.044 3.956 10 C 0.146 3.854 11 N -0.546 5.546 12 C -0.241 4.241 13 H 0.061 0.939 14 C 0.019 3.981 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.292 1.292 19 H -0.287 1.287 20 C 0.118 3.882 21 C -0.194 4.194 22 C -0.220 4.220 23 C -0.158 4.158 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -3.487 -12.956 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.047 4.047 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.243 4.243 7 C 0.102 3.898 8 O -0.184 6.184 9 C -0.034 4.034 10 C 0.020 3.980 11 N -0.263 5.263 12 C -0.370 4.370 13 H 0.079 0.921 14 C -0.181 4.181 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.219 1.219 19 H -0.213 1.213 20 C 0.009 3.991 21 C -0.232 4.232 22 C -0.261 4.261 23 C -0.176 4.176 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.032 -3.519 -12.582 13.106 hybrid contribution -0.282 -0.526 0.109 0.607 sum -1.314 -4.045 -12.473 13.178 Atomic orbital electron populations 1.21741 0.94810 1.01438 1.02349 1.20532 0.96137 0.92748 1.02719 1.19598 0.97042 0.95614 0.92411 1.20733 1.05922 0.95565 0.97048 1.20817 0.97389 0.94505 0.97080 1.21254 1.09302 1.01320 0.92398 1.19323 0.92333 0.92183 0.86002 1.86461 1.78723 1.27892 1.25350 1.23885 0.96250 0.80354 1.02886 1.21032 0.96834 0.91975 0.88201 1.43288 0.99099 1.29023 1.54865 1.18906 1.08430 0.90668 1.19003 0.92140 1.25123 1.00835 0.96290 0.95841 1.70036 1.18399 1.24951 1.39805 0.86379 0.79316 0.84433 0.77582 1.20014 1.21926 1.21317 1.21239 0.85586 0.99518 0.92776 1.23003 0.98109 0.96117 1.06002 1.23350 1.04777 0.95919 1.02053 1.20327 1.05700 0.93212 0.98385 0.92596 0.92327 0.92660 0.91166 0.90917 0.86758 0.86549 0.85884 0.93762 0.93994 0.93009 0.87764 0.93738 0.89854 0.88438 0.90902 0.91348 0.88923 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 37.16 0.37 -1.19 16 2 C -0.08 -0.98 6.06 -27.88 -0.17 -1.15 16 3 C -0.05 -0.68 5.13 -104.65 -0.54 -1.22 16 4 C -0.17 -2.36 9.70 -39.56 -0.38 -2.74 16 5 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 6 C -0.22 -3.61 9.04 -39.43 -0.36 -3.97 16 7 C 0.15 2.82 6.69 -39.22 -0.26 2.56 16 8 O -0.27 -5.97 9.61 -19.43 -0.19 -6.16 16 9 C 0.04 0.86 5.08 37.16 0.19 1.05 16 10 C 0.15 3.29 5.76 -4.04 -0.02 3.27 16 11 N -0.55 -13.29 2.73 -165.66 -0.45 -13.74 16 12 C -0.24 -6.47 7.97 -15.06 -0.12 -6.59 16 13 H 0.06 1.68 6.75 -52.49 -0.35 1.32 16 14 C 0.02 0.52 4.98 -17.43 -0.09 0.44 16 15 N -0.89 -25.32 11.50 55.49 0.64 -24.68 16 16 Si 0.89 22.03 29.60 -169.99 -5.03 16.99 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 C 0.12 2.51 6.56 -67.93 -0.45 2.06 16 21 C -0.19 -3.89 9.80 -26.73 -0.26 -4.15 16 22 C -0.22 -4.50 10.36 -26.73 -0.28 -4.78 16 23 C -0.16 -2.78 9.64 -39.44 -0.38 -3.17 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.83 6.30 -52.48 -0.33 1.50 16 32 H 0.04 0.82 7.67 -51.93 -0.40 0.42 16 33 H 0.04 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.10 2.70 5.59 -51.93 -0.29 2.41 16 36 H 0.25 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.10 2.15 6.46 -51.93 -0.34 1.81 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 2.17 8.14 -51.92 -0.42 1.75 16 42 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -29.24 345.62 -9.70 -38.93 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.73 Total: 4.54 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -3.14 Total: -21.10 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.19 Total: -38.43 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.19 Total: -6.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.24 -9.70 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299512212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.215 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds