Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46944 * 2 1 4 4 C 1.38286 * 119.96909 * 270.01891 * 3 2 1 5 5 C 1.38247 * 120.11137 * 180.02562 * 4 3 2 6 6 C 1.38164 * 120.05347 * 359.97438 * 5 4 3 7 7 C 1.38712 * 119.94652 * 359.97400 * 6 5 4 8 8 O 1.35901 * 120.05763 * 180.29815 * 7 6 5 9 9 C 1.42898 * 116.99691 * 359.73020 * 8 7 6 10 10 C 1.53007 * 109.47073 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47085 * 64.99756 * 10 9 8 12 12 C 1.36942 * 120.00015 * 269.99975 * 11 10 9 13 13 H 1.08001 * 119.99973 * 140.45944 * 12 11 10 14 14 C 1.38811 * 120.00302 * 320.46227 * 12 11 10 15 15 N 1.31626 * 119.99778 * 340.37019 * 14 12 11 16 16 Si 1.86799 * 120.00223 * 160.36429 * 14 12 11 17 17 H 1.48500 * 109.46841 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46683 * 119.99923 * 16 14 12 19 19 H 1.48496 * 109.47271 * 240.00042 * 16 14 12 20 20 C 1.46494 * 120.00037 * 90.00446 * 11 10 9 21 21 C 1.53007 * 117.50092 * 183.28627 * 20 11 10 22 22 C 1.53001 * 60.00081 * 252.50674 * 21 20 11 23 23 C 1.38117 * 119.97394 * 89.99990 * 3 2 1 24 24 H 1.09008 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47247 * 300.00484 * 1 2 3 26 26 H 1.09004 * 109.47138 * 60.00341 * 1 2 3 27 27 H 1.08994 * 109.47553 * 239.99839 * 2 1 3 28 28 H 1.09004 * 109.47138 * 119.99659 * 2 1 3 29 29 H 1.07994 * 119.94501 * 0.02562 * 4 3 2 30 30 H 1.07993 * 119.97190 * 180.02562 * 5 4 3 31 31 H 1.08005 * 120.02680 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47291 * 299.99756 * 9 8 7 33 33 H 1.08999 * 109.47487 * 60.00195 * 9 8 7 34 34 H 1.08997 * 109.47204 * 185.00154 * 10 9 8 35 35 H 1.08997 * 109.46419 * 305.00133 * 10 9 8 36 36 H 0.96992 * 119.99617 * 175.01782 * 15 14 12 37 37 H 1.09002 * 115.55227 * 328.99448 * 20 11 10 38 38 H 1.09002 * 117.49672 * 359.97438 * 21 20 11 39 39 H 1.08998 * 117.49870 * 145.02155 * 21 20 11 40 40 H 1.08997 * 117.50428 * 252.50975 * 22 21 20 41 41 H 1.09009 * 117.51757 * 107.47500 * 22 21 20 42 42 H 1.08007 * 120.03082 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0723 -1.1980 5 6 2.7234 3.3755 -1.2014 6 6 2.9554 4.0306 -0.0072 7 6 2.7246 3.3797 1.1958 8 8 2.9462 4.0239 2.3717 9 6 3.4227 5.3689 2.2947 10 6 3.6123 5.9244 3.7077 11 7 4.6720 5.1762 4.3884 12 6 4.3618 4.0587 5.1165 13 1 5.0103 3.1956 5.0838 14 6 3.2139 4.0350 5.8967 15 7 2.6367 5.1632 6.2524 16 14 2.4883 2.4022 6.4415 17 1 3.3193 1.2905 5.9135 18 1 2.4654 2.3412 7.9251 19 1 1.1037 2.2771 5.9195 20 6 6.0635 5.6236 4.2902 21 6 7.1330 4.7573 4.9588 22 6 6.7438 6.1030 5.5741 23 6 2.2623 2.0715 1.1964 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0810 1.5621 -2.1324 30 1 2.9018 3.8822 -2.1382 31 1 3.3154 5.0489 -0.0104 32 1 4.3760 5.3871 1.7666 33 1 2.6981 5.9809 1.7576 34 1 3.8901 6.9768 3.6501 35 1 2.6812 5.8243 4.2654 36 1 1.7958 5.1464 6.7356 37 1 6.3313 6.1263 3.3609 38 1 6.8011 3.8548 5.4721 39 1 8.1045 4.6900 4.4693 40 1 7.4593 6.9210 5.4894 41 1 6.1557 6.0860 6.4918 42 1 2.0827 1.5622 2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299512212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 11.177820 kcal Electronic energy + Delta-G solvation = -21435.951556 eV Core-core repulsion = 18381.962494 eV Total energy + Delta-G solvation = -3053.989062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98208 -39.04952 -38.26369 -35.35534 -34.64051 -33.05509 -31.29650 -29.98243 -29.49630 -26.36172 -24.96371 -23.51273 -23.33598 -22.91299 -21.76409 -21.12955 -18.64575 -18.32748 -17.25402 -16.94887 -16.79973 -16.65295 -16.12696 -15.61418 -15.47222 -14.92860 -14.52880 -14.38088 -14.07539 -13.96534 -13.72844 -13.44168 -13.30872 -12.85941 -12.73228 -12.64828 -12.47449 -12.31467 -12.13895 -11.97977 -11.84474 -11.73917 -11.56997 -11.40796 -11.33379 -10.89430 -10.45822 -9.71308 -8.98861 -8.48631 -7.77680 -5.46166 0.42017 0.60144 1.37985 1.42047 1.50506 2.47898 2.55602 2.87194 3.18763 3.43897 3.48199 3.85443 3.95336 4.15630 4.26132 4.28747 4.32888 4.41091 4.45027 4.48896 4.51519 4.58151 4.61487 4.67517 4.67999 4.76776 4.93855 4.95614 5.06225 5.07472 5.11453 5.18976 5.36343 5.36710 5.49217 5.56170 5.56377 5.64731 5.71676 5.73741 6.00946 6.47787 6.77525 7.18146 7.85708 8.35507 9.12999 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.005801 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.412508 B = 4825.868064 C = 5833.652178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.046 4.046 4 C -0.167 4.167 5 C -0.074 4.074 6 C -0.229 4.229 7 C 0.115 3.885 8 O -0.314 6.314 9 C 0.055 3.945 10 C 0.145 3.855 11 N -0.563 5.563 12 C -0.232 4.232 13 H 0.046 0.954 14 C -0.025 4.025 15 N -0.916 5.916 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.100 3.900 21 C -0.185 4.185 22 C -0.213 4.213 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.134 0.866 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.248 0.752 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -3.832 -16.210 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.046 4.046 4 C -0.185 4.185 5 C -0.092 4.092 6 C -0.248 4.248 7 C 0.068 3.932 8 O -0.227 6.227 9 C -0.022 4.022 10 C 0.019 3.981 11 N -0.280 5.280 12 C -0.362 4.362 13 H 0.063 0.937 14 C -0.222 4.222 15 N -0.560 5.560 16 Si 0.768 3.232 17 H -0.198 1.198 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.008 4.008 21 C -0.223 4.223 22 C -0.254 4.254 23 C -0.205 4.205 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.152 0.848 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.158 -3.869 -15.851 16.317 hybrid contribution -0.513 -0.451 1.008 1.218 sum -0.671 -4.321 -14.842 15.473 Atomic orbital electron populations 1.21724 0.93971 1.02604 1.01762 1.20622 0.96785 0.91078 1.03682 1.19947 0.96000 0.96872 0.91750 1.21193 1.03967 0.95515 0.97800 1.21273 0.95684 0.94664 0.97585 1.21438 1.09294 1.01904 0.92144 1.19612 0.94582 0.92833 0.86136 1.86370 1.79873 1.28828 1.27673 1.23635 0.97488 0.80185 1.00872 1.20965 0.94851 0.93003 0.89329 1.43447 1.00795 1.28737 1.55049 1.18885 1.07921 0.91276 1.18162 0.93666 1.25608 1.01635 0.98247 0.96755 1.70131 1.18593 1.26093 1.41223 0.85659 0.78380 0.82125 0.77042 1.19782 1.21825 1.21830 1.21570 0.84203 1.00663 0.94335 1.23002 0.99274 0.94667 1.05349 1.23250 1.04846 0.97452 0.99810 1.20425 1.07692 0.93492 0.98936 0.90591 0.94379 0.91767 0.88500 0.91656 0.83153 0.82868 0.84808 0.92544 0.91745 0.91344 0.91472 0.94250 0.86736 0.91212 0.87188 0.87805 0.92776 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.89 71.98 0.71 -2.08 16 2 C -0.08 -1.82 6.06 29.85 0.18 -1.64 16 3 C -0.05 -1.27 5.13 -19.88 -0.10 -1.37 16 4 C -0.17 -3.92 9.70 22.28 0.22 -3.70 16 5 C -0.07 -1.80 10.04 22.25 0.22 -1.58 16 6 C -0.23 -7.01 9.04 22.37 0.20 -6.81 16 7 C 0.11 4.40 6.69 22.51 0.15 4.55 16 8 O -0.31 -14.20 9.61 -92.44 -0.89 -15.09 16 9 C 0.06 2.15 5.08 71.98 0.37 2.52 16 10 C 0.14 6.61 5.76 86.38 0.50 7.11 16 11 N -0.56 -27.80 2.73 -678.02 -1.85 -29.65 16 12 C -0.23 -12.90 7.97 84.03 0.67 -12.23 16 13 H 0.05 2.62 6.75 -2.91 -0.02 2.60 16 14 C -0.03 -1.46 4.98 84.86 0.42 -1.04 16 15 N -0.92 -54.38 11.50 21.65 0.25 -54.13 16 16 Si 0.94 47.22 29.60 68.60 2.03 49.25 16 17 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 20 C 0.10 4.16 6.56 45.00 0.30 4.45 16 21 C -0.18 -7.18 9.80 30.60 0.30 -6.88 16 22 C -0.21 -8.49 10.36 30.60 0.32 -8.17 16 23 C -0.19 -6.78 9.64 22.36 0.22 -6.56 16 24 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.10 1.58 8.08 -2.39 -0.02 1.56 16 28 H 0.06 1.49 8.08 -2.38 -0.02 1.47 16 29 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.13 3.69 6.30 -2.91 -0.02 3.67 16 32 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 33 H 0.06 2.16 7.65 -2.39 -0.02 2.14 16 34 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 35 H 0.07 3.63 5.59 -2.39 -0.01 3.61 16 36 H 0.25 14.35 8.32 -92.71 -0.77 13.58 16 37 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 38 H 0.07 3.11 6.46 -2.39 -0.02 3.09 16 39 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -66.68 345.62 5.19 -61.49 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.98 Total: 21.57 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 4.67 Total: -33.44 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.60 Total: -83.78 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.89 Total: -15.09 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -66.68 5.19 -61.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299512212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.668 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds