Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.97123 * 2 1 4 4 C 1.38244 * 120.11001 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05888 * 359.76600 * 4 3 2 6 6 C 1.50696 * 120.03222 * 180.25615 * 5 4 3 7 7 C 1.38720 * 119.94050 * 0.53168 * 5 4 3 8 8 O 1.35898 * 120.05611 * 179.72255 * 7 5 4 9 9 C 1.42895 * 116.99945 * 179.72786 * 8 7 5 10 10 C 1.53002 * 109.47188 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47138 * 64.99425 * 10 9 8 12 12 C 1.36933 * 120.00106 * 269.99958 * 11 10 9 13 13 H 1.08005 * 119.99614 * 140.78650 * 12 11 10 14 14 C 1.38810 * 120.00456 * 320.79201 * 12 11 10 15 15 N 1.31618 * 120.00445 * 156.97854 * 14 12 11 16 16 Si 1.86799 * 119.99611 * 336.98042 * 14 12 11 17 17 H 1.48500 * 109.47675 * 92.00607 * 16 14 12 18 18 H 1.48506 * 109.47289 * 212.00462 * 16 14 12 19 19 H 1.48507 * 109.47374 * 332.00102 * 16 14 12 20 20 C 1.46504 * 119.99543 * 90.00399 * 11 10 9 21 21 C 1.53000 * 117.49439 * 184.01311 * 20 11 10 22 22 C 1.53000 * 60.00299 * 252.51272 * 21 20 11 23 23 C 1.38124 * 119.97462 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.46980 * 269.98009 * 1 2 3 25 25 H 1.08997 * 109.47211 * 29.98015 * 1 2 3 26 26 H 1.09000 * 109.47316 * 149.97607 * 1 2 3 27 27 H 1.07993 * 119.94356 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.97098 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.46895 * 270.27655 * 6 5 4 30 30 H 1.09000 * 109.47501 * 30.27509 * 6 5 4 31 31 H 1.09004 * 109.47267 * 150.27586 * 6 5 4 32 32 H 1.09000 * 109.47130 * 299.99504 * 9 8 7 33 33 H 1.08994 * 109.47317 * 59.99857 * 9 8 7 34 34 H 1.09001 * 109.47233 * 185.00146 * 10 9 8 35 35 H 1.08998 * 109.46967 * 304.99805 * 10 9 8 36 36 H 0.97000 * 120.00136 * 180.02562 * 15 14 12 37 37 H 1.08999 * 115.55171 * 329.72865 * 20 11 10 38 38 H 1.08996 * 117.50352 * 0.02562 * 21 20 11 39 39 H 1.09009 * 117.49323 * 145.02057 * 21 20 11 40 40 H 1.08998 * 117.49877 * 252.51442 * 22 21 20 41 41 H 1.08999 * 117.51599 * 107.48057 * 22 21 20 42 42 H 1.08006 * 120.02344 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0072 0.0060 6 6 5.7822 0.0115 0.0124 7 6 3.5846 -1.1959 -0.0003 8 8 4.2658 -2.3718 -0.0007 9 6 3.4893 -3.5713 -0.0012 10 6 4.4230 -4.7834 -0.0010 11 7 5.1830 -4.8141 1.2512 12 6 6.3897 -4.1725 1.3356 13 1 6.6566 -3.6406 2.2369 14 6 7.2700 -4.2055 0.2628 15 7 8.1852 -3.2685 0.1333 16 14 7.1557 -5.5800 -0.9970 17 1 6.2703 -5.1575 -2.1118 18 1 8.5102 -5.8796 -1.5271 19 1 6.5959 -6.7959 -0.3538 20 6 4.6518 -5.5313 2.4129 21 6 5.4459 -5.4482 3.7181 22 6 5.4350 -6.7478 2.9108 23 6 2.1971 -1.1965 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6565 2.1324 -0.0004 28 1 4.1175 2.1382 0.0010 29 1 6.1498 0.0154 -1.0137 30 1 6.1408 0.9011 0.5302 31 1 6.1459 -0.8788 0.5253 32 1 2.8604 -3.5975 0.8887 33 1 2.8606 -3.5968 -0.8912 34 1 3.8338 -5.6960 -0.0910 35 1 5.1121 -4.7113 -0.8424 36 1 8.8001 -3.2914 -0.6166 37 1 3.5649 -5.5682 2.4861 38 1 6.3632 -4.8596 3.7125 39 1 4.8813 -5.4301 4.6504 40 1 4.8633 -7.5847 3.3119 41 1 6.3452 -7.0147 2.3737 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299523014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = 33.634614 kcal Electronic energy + Delta-G solvation = -21852.679036 eV Core-core repulsion = 18799.663774 eV Total energy + Delta-G solvation = -3053.015262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76130 -37.59376 -36.72108 -33.73227 -33.23383 -31.48416 -29.63154 -28.81811 -28.19179 -24.54348 -24.15990 -23.03802 -21.58372 -21.17374 -20.43690 -19.58499 -17.12234 -16.50137 -15.79965 -15.47714 -15.32434 -14.97738 -14.70698 -13.95358 -13.69198 -13.55629 -13.16396 -12.82919 -12.60995 -12.49258 -12.31054 -12.20377 -12.12820 -11.63992 -11.41546 -11.19845 -10.89154 -10.81562 -10.72775 -10.49157 -10.40575 -10.28630 -9.98572 -9.72739 -9.43457 -9.41886 -8.42801 -8.34169 -7.50717 -6.71030 -5.95095 -3.36867 1.66156 1.86772 3.30325 3.47086 3.51569 3.91457 4.09918 4.54175 4.74299 4.86037 5.00083 5.09110 5.30575 5.35074 5.45467 5.60994 5.63324 5.65328 5.73619 5.77478 5.85881 5.89155 5.91479 5.96804 6.01708 6.08597 6.19930 6.25800 6.36011 6.42384 6.46107 6.48111 6.62184 6.74458 6.80750 6.90594 6.92119 7.12090 7.17553 7.32360 8.05698 8.16161 8.45178 8.99401 9.74475 10.11565 11.19741 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.006095 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.455533 B = 4592.745704 C = 5233.270566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.062 4.062 3 C -0.171 4.171 4 C -0.086 4.086 5 C -0.117 4.117 6 C -0.106 4.106 7 C 0.145 3.855 8 O -0.263 6.263 9 C 0.045 3.955 10 C 0.134 3.866 11 N -0.567 5.567 12 C -0.257 4.257 13 H 0.080 0.920 14 C 0.048 3.952 15 N -0.889 5.889 16 Si 0.864 3.136 17 H -0.285 1.285 18 H -0.301 1.301 19 H -0.269 1.269 20 C 0.117 3.883 21 C -0.186 4.186 22 C -0.223 4.223 23 C -0.217 4.217 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 3.798 -0.253 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.063 4.063 3 C -0.189 4.189 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.163 4.163 7 C 0.097 3.903 8 O -0.174 6.174 9 C -0.033 4.033 10 C 0.008 3.992 11 N -0.285 5.285 12 C -0.385 4.385 13 H 0.097 0.903 14 C -0.153 4.153 15 N -0.529 5.529 16 Si 0.694 3.306 17 H -0.213 1.213 18 H -0.229 1.229 19 H -0.194 1.194 20 C 0.008 3.992 21 C -0.225 4.225 22 C -0.264 4.264 23 C -0.236 4.236 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.197 3.832 -0.362 12.790 hybrid contribution -0.232 -0.839 -0.775 1.166 sum -12.429 2.994 -1.137 12.835 Atomic orbital electron populations 1.20744 0.91740 1.02246 1.01951 1.19566 0.95402 0.92737 0.98556 1.20733 0.94084 0.96938 1.07131 1.20811 0.93812 0.96769 0.98978 1.19421 0.97152 0.90211 1.04996 1.20634 0.89644 1.03808 1.02185 1.19126 0.90073 0.87349 0.93733 1.86504 1.33640 1.10909 1.86384 1.23663 0.95137 0.85522 0.99014 1.21405 0.94076 0.92688 0.91027 1.43612 1.20042 1.57665 1.07177 1.18549 0.91333 1.25356 1.03251 0.90251 1.25382 0.95634 0.96666 0.97600 1.69855 1.21074 1.31232 1.30745 0.87178 0.75957 0.85537 0.81902 1.21334 1.22925 1.19353 1.21180 0.93379 0.95537 0.89059 1.23041 1.03988 1.01334 0.94093 1.23372 1.04721 0.91850 1.06449 1.21075 0.93197 0.98417 1.10879 0.91466 0.91836 0.91939 0.86784 0.86052 0.92075 0.92855 0.88505 0.92987 0.93818 0.91862 0.91282 0.92854 0.89319 0.87836 0.90604 0.90923 0.89264 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.06 -0.90 5.88 -104.65 -0.62 -1.52 16 3 C -0.17 -2.42 9.70 -39.56 -0.38 -2.81 16 4 C -0.09 -1.33 9.70 -39.60 -0.38 -1.71 16 5 C -0.12 -2.17 5.89 -104.47 -0.62 -2.78 16 6 C -0.11 -2.04 9.79 36.00 0.35 -1.69 16 7 C 0.14 2.80 6.66 -39.21 -0.26 2.54 16 8 O -0.26 -5.75 8.66 -19.42 -0.17 -5.91 16 9 C 0.04 0.84 5.08 37.16 0.19 1.03 16 10 C 0.13 2.78 4.99 -4.04 -0.02 2.76 16 11 N -0.57 -12.95 2.36 -165.65 -0.39 -13.34 16 12 C -0.26 -6.86 8.43 -15.06 -0.13 -6.98 16 13 H 0.08 2.34 6.86 -52.48 -0.36 1.98 16 14 C 0.05 1.35 5.28 -17.43 -0.09 1.26 16 15 N -0.89 -26.10 13.97 55.49 0.78 -25.32 16 16 Si 0.86 21.66 25.31 -169.99 -4.30 17.35 16 17 H -0.29 -6.98 6.52 56.52 0.37 -6.61 16 18 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 C 0.12 2.31 6.57 -67.92 -0.45 1.87 16 21 C -0.19 -3.55 9.80 -26.73 -0.26 -3.81 16 22 C -0.22 -4.21 10.35 -26.73 -0.28 -4.48 16 23 C -0.22 -3.58 8.69 -39.43 -0.34 -3.92 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.10 2.28 7.53 -51.93 -0.39 1.89 16 32 H 0.05 0.91 7.66 -51.93 -0.40 0.51 16 33 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.07 1.60 3.45 -51.93 -0.18 1.42 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.10 2.24 6.44 -51.93 -0.33 1.90 16 39 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.12 1.82 6.30 -52.48 -0.33 1.49 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -29.60 339.36 -8.52 -38.12 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.62 Total: 5.09 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.92 Total: -21.09 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.38 Total: -38.67 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.17 Total: -5.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.30 Total: 17.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.60 -8.52 -38.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299523014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.751 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds