Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.97123 * 2 1 4 4 C 1.38244 * 120.11001 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.05888 * 359.76600 * 4 3 2 6 6 C 1.50696 * 120.03222 * 180.25615 * 5 4 3 7 7 C 1.38720 * 119.94050 * 0.53168 * 5 4 3 8 8 O 1.35898 * 120.05611 * 179.72255 * 7 5 4 9 9 C 1.42895 * 116.99945 * 179.72786 * 8 7 5 10 10 C 1.53002 * 109.47188 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47138 * 64.99425 * 10 9 8 12 12 C 1.36933 * 120.00106 * 269.99958 * 11 10 9 13 13 H 1.08005 * 119.99614 * 140.78650 * 12 11 10 14 14 C 1.38810 * 120.00456 * 320.79201 * 12 11 10 15 15 N 1.31618 * 120.00445 * 156.97854 * 14 12 11 16 16 Si 1.86799 * 119.99611 * 336.98042 * 14 12 11 17 17 H 1.48500 * 109.47675 * 92.00607 * 16 14 12 18 18 H 1.48506 * 109.47289 * 212.00462 * 16 14 12 19 19 H 1.48507 * 109.47374 * 332.00102 * 16 14 12 20 20 C 1.46504 * 119.99543 * 90.00399 * 11 10 9 21 21 C 1.53000 * 117.49439 * 184.01311 * 20 11 10 22 22 C 1.53000 * 60.00299 * 252.51272 * 21 20 11 23 23 C 1.38124 * 119.97462 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.46980 * 269.98009 * 1 2 3 25 25 H 1.08997 * 109.47211 * 29.98015 * 1 2 3 26 26 H 1.09000 * 109.47316 * 149.97607 * 1 2 3 27 27 H 1.07993 * 119.94356 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.97098 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.46895 * 270.27655 * 6 5 4 30 30 H 1.09000 * 109.47501 * 30.27509 * 6 5 4 31 31 H 1.09004 * 109.47267 * 150.27586 * 6 5 4 32 32 H 1.09000 * 109.47130 * 299.99504 * 9 8 7 33 33 H 1.08994 * 109.47317 * 59.99857 * 9 8 7 34 34 H 1.09001 * 109.47233 * 185.00146 * 10 9 8 35 35 H 1.08998 * 109.46967 * 304.99805 * 10 9 8 36 36 H 0.97000 * 120.00136 * 180.02562 * 15 14 12 37 37 H 1.08999 * 115.55171 * 329.72865 * 20 11 10 38 38 H 1.08996 * 117.50352 * 0.02562 * 21 20 11 39 39 H 1.09009 * 117.49323 * 145.02057 * 21 20 11 40 40 H 1.08998 * 117.49877 * 252.51442 * 22 21 20 41 41 H 1.08999 * 117.51599 * 107.48057 * 22 21 20 42 42 H 1.08006 * 120.02344 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0072 0.0060 6 6 5.7822 0.0115 0.0124 7 6 3.5846 -1.1959 -0.0003 8 8 4.2658 -2.3718 -0.0007 9 6 3.4893 -3.5713 -0.0012 10 6 4.4230 -4.7834 -0.0010 11 7 5.1830 -4.8141 1.2512 12 6 6.3897 -4.1725 1.3356 13 1 6.6566 -3.6406 2.2369 14 6 7.2700 -4.2055 0.2628 15 7 8.1852 -3.2685 0.1333 16 14 7.1557 -5.5800 -0.9970 17 1 6.2703 -5.1575 -2.1118 18 1 8.5102 -5.8796 -1.5271 19 1 6.5959 -6.7959 -0.3538 20 6 4.6518 -5.5313 2.4129 21 6 5.4459 -5.4482 3.7181 22 6 5.4350 -6.7478 2.9108 23 6 2.1971 -1.1965 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6565 2.1324 -0.0004 28 1 4.1175 2.1382 0.0010 29 1 6.1498 0.0154 -1.0137 30 1 6.1408 0.9011 0.5302 31 1 6.1459 -0.8788 0.5253 32 1 2.8604 -3.5975 0.8887 33 1 2.8606 -3.5968 -0.8912 34 1 3.8338 -5.6960 -0.0910 35 1 5.1121 -4.7113 -0.8424 36 1 8.8001 -3.2914 -0.6166 37 1 3.5649 -5.5682 2.4861 38 1 6.3632 -4.8596 3.7125 39 1 4.8813 -5.4301 4.6504 40 1 4.8633 -7.5847 3.3119 41 1 6.3452 -7.0147 2.3737 42 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299523014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = 17.600279 kcal Electronic energy + Delta-G solvation = -21853.374337 eV Core-core repulsion = 18799.663774 eV Total energy + Delta-G solvation = -3053.710563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09065 -39.13747 -38.18928 -35.35248 -34.59970 -33.42899 -30.96867 -29.99921 -29.83110 -26.27432 -25.57995 -24.51182 -23.07518 -22.58782 -21.71402 -21.34227 -18.63649 -18.25631 -17.43575 -17.07335 -16.80750 -16.33167 -16.23941 -15.44883 -15.15586 -14.72080 -14.65326 -14.47453 -14.09605 -13.93369 -13.79243 -13.69732 -13.48813 -13.23719 -12.71938 -12.62171 -12.57259 -12.46921 -12.17120 -12.06602 -11.90124 -11.81862 -11.52987 -11.50422 -11.21365 -10.95265 -10.51089 -9.56584 -8.83861 -8.57272 -8.10002 -5.47606 0.43078 0.61591 1.28260 1.39514 1.49177 2.45877 2.54134 2.85663 3.02108 3.24267 3.39437 3.88631 3.95232 4.18092 4.19777 4.26771 4.28527 4.37856 4.38450 4.41602 4.44872 4.52742 4.61254 4.77760 4.81088 4.83384 4.86610 4.89660 4.94313 4.96181 4.98735 5.03735 5.24188 5.32408 5.47990 5.50974 5.54871 5.68346 5.73530 6.01889 6.06658 6.28649 6.77529 7.06342 7.70527 8.09749 9.08836 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.006095 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.455533 B = 4592.745704 C = 5233.270566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.060 4.060 3 C -0.166 4.166 4 C -0.083 4.083 5 C -0.152 4.152 6 C -0.092 4.092 7 C 0.112 3.888 8 O -0.307 6.307 9 C 0.047 3.953 10 C 0.127 3.873 11 N -0.580 5.580 12 C -0.230 4.230 13 H 0.035 0.965 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.925 3.075 17 H -0.276 1.276 18 H -0.314 1.314 19 H -0.257 1.257 20 C 0.103 3.897 21 C -0.190 4.190 22 C -0.209 4.209 23 C -0.221 4.221 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.041 0.959 36 H 0.257 0.743 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 3.588 -0.254 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.060 4.060 3 C -0.184 4.184 4 C -0.101 4.101 5 C -0.153 4.153 6 C -0.149 4.149 7 C 0.066 3.934 8 O -0.219 6.219 9 C -0.030 4.030 10 C 0.002 3.998 11 N -0.300 5.300 12 C -0.360 4.360 13 H 0.053 0.947 14 C -0.203 4.203 15 N -0.580 5.580 16 Si 0.755 3.245 17 H -0.204 1.204 18 H -0.243 1.243 19 H -0.181 1.181 20 C -0.004 4.004 21 C -0.228 4.228 22 C -0.249 4.249 23 C -0.240 4.240 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.462 3.596 -0.354 16.854 hybrid contribution 0.970 -0.666 -0.669 1.353 sum -15.493 2.930 -1.023 15.801 Atomic orbital electron populations 1.20822 0.88617 1.03797 1.03211 1.20087 0.97641 0.91969 0.96304 1.21188 0.93536 0.98485 1.05175 1.21097 0.94821 0.96390 0.97750 1.19552 0.96339 0.91659 1.07704 1.20391 0.91350 1.01993 1.01130 1.19447 0.91521 0.86671 0.95803 1.86439 1.35733 1.12410 1.87366 1.23612 0.94584 0.83977 1.00836 1.21540 0.94075 0.95397 0.88814 1.43684 1.19129 1.58174 1.08977 1.18231 0.92756 1.23771 1.01197 0.94748 1.25889 0.95954 0.98539 0.99934 1.70002 1.22863 1.33253 1.31908 0.86178 0.75206 0.83053 0.80083 1.20380 1.24317 1.18134 1.21546 0.95261 0.95770 0.87787 1.23007 1.02868 1.01262 0.95642 1.23335 1.03524 0.92621 1.05449 1.21281 0.91920 1.00105 1.10709 0.90154 0.89784 0.91025 0.83217 0.83732 0.92907 0.90849 0.93896 0.91700 0.91131 0.88067 0.94098 0.93435 0.85508 0.91737 0.87177 0.86967 0.92289 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16 2 C -0.06 -1.53 5.88 -19.88 -0.12 -1.65 16 3 C -0.17 -4.14 9.70 22.28 0.22 -3.93 16 4 C -0.08 -2.43 9.70 22.25 0.22 -2.22 16 5 C -0.15 -5.75 5.89 -19.77 -0.12 -5.87 16 6 C -0.09 -3.80 9.79 71.23 0.70 -3.11 16 7 C 0.11 4.39 6.66 22.51 0.15 4.54 16 8 O -0.31 -13.83 8.66 -92.40 -0.80 -14.63 16 9 C 0.05 1.71 5.08 71.98 0.37 2.08 16 10 C 0.13 5.11 4.99 86.38 0.43 5.54 16 11 N -0.58 -26.56 2.36 -678.00 -1.60 -28.16 16 12 C -0.23 -12.92 8.43 84.03 0.71 -12.21 16 13 H 0.03 2.22 6.86 -2.91 -0.02 2.20 16 14 C -0.01 -0.37 5.28 84.86 0.45 0.08 16 15 N -0.94 -58.96 13.97 21.65 0.30 -58.66 16 16 Si 0.93 46.53 25.31 68.60 1.74 48.26 16 17 H -0.28 -13.33 6.52 99.48 0.65 -12.68 16 18 H -0.31 -16.27 7.11 99.48 0.71 -15.56 16 19 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.10 3.90 6.57 44.99 0.30 4.20 16 21 C -0.19 -7.09 9.80 30.59 0.30 -6.79 16 22 C -0.21 -7.45 10.35 30.60 0.32 -7.13 16 23 C -0.22 -6.91 8.69 22.37 0.19 -6.71 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 26 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.59 8.09 -2.39 -0.02 2.57 16 31 H 0.04 2.21 7.53 -2.38 -0.02 2.20 16 32 H 0.06 2.14 7.66 -2.39 -0.02 2.12 16 33 H 0.07 2.14 7.66 -2.39 -0.02 2.12 16 34 H 0.10 3.26 8.07 -2.39 -0.02 3.24 16 35 H 0.04 1.89 3.45 -2.39 -0.01 1.88 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.13 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.06 2.93 6.44 -2.39 -0.02 2.92 16 39 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.14 3.70 6.30 -2.91 -0.02 3.68 16 Total: -1.00 -70.67 339.36 5.39 -65.28 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.93 Total: 22.19 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 4.82 Total: -34.29 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.30 Total: -86.82 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.80 Total: -14.63 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.74 Total: 48.26 kcal Total: -70.67 5.39 -65.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299523014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.880 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds