Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 C 1.52998 * 109.47287 * 240.00092 * 2 1 3 5 5 C 1.50699 * 109.46972 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00001 * 269.73003 * 5 4 2 7 7 C 1.38233 * 120.00033 * 179.77015 * 6 5 4 8 8 C 1.38235 * 119.99887 * 0.47718 * 7 6 5 9 9 C 1.50704 * 119.99799 * 179.77514 * 8 7 6 10 10 C 1.50702 * 109.46922 * 270.02016 * 9 8 7 11 11 O 1.21296 * 119.99791 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00036 * 180.02562 * 10 9 8 13 13 C 1.46491 * 119.99997 * 359.97438 * 12 10 9 14 14 C 1.37095 * 119.99835 * 180.02562 * 12 10 9 15 15 H 1.07994 * 120.00507 * 22.39959 * 14 12 10 16 16 C 1.38952 * 119.99618 * 202.41067 * 14 12 10 17 17 N 1.31411 * 120.00387 * 11.58307 * 16 14 12 18 18 Si 1.86807 * 119.99832 * 191.58960 * 16 14 12 19 19 H 1.48498 * 109.47115 * 89.99534 * 18 16 14 20 20 H 1.48499 * 109.46889 * 209.99503 * 18 16 14 21 21 H 1.48502 * 109.47197 * 329.99635 * 18 16 14 22 22 C 1.38228 * 120.00179 * 359.79579 * 8 7 6 23 23 C 1.38233 * 120.00108 * 89.99926 * 5 4 2 24 24 H 1.09003 * 109.47248 * 300.00364 * 1 2 3 25 25 H 1.09001 * 109.47009 * 60.00033 * 1 2 3 26 26 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47171 * 119.99648 * 2 1 3 28 28 H 1.09003 * 109.47398 * 59.99727 * 3 2 1 29 29 H 1.08996 * 109.47152 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47193 * 299.99854 * 3 2 1 31 31 H 1.08995 * 109.47093 * 54.99662 * 4 2 1 32 32 H 1.09001 * 109.47178 * 174.99970 * 4 2 1 33 33 H 1.08004 * 119.99830 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.00092 * 180.25271 * 7 6 5 35 35 H 1.08995 * 109.47468 * 30.01748 * 9 8 7 36 36 H 1.09001 * 109.47093 * 150.02232 * 9 8 7 37 37 H 1.09001 * 109.47085 * 92.16173 * 13 12 10 38 38 H 1.08999 * 109.47599 * 212.15857 * 13 12 10 39 39 H 1.09007 * 109.47224 * 332.16302 * 13 12 10 40 40 H 0.96992 * 120.00434 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.00472 * 179.97438 * 22 8 7 42 42 H 1.07992 * 119.99932 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4840 -3.0974 -0.5999 7 6 2.1162 -4.4286 -0.5403 8 6 0.9102 -4.8372 -1.0784 9 6 0.5116 -6.2893 -1.0179 10 6 1.0139 -6.9998 -2.2483 11 8 1.6350 -6.3873 -3.0912 12 7 0.7731 -8.3157 -2.4122 13 6 0.0235 -9.0555 -1.3940 14 6 1.2306 -8.9621 -3.5313 15 1 2.0601 -8.5540 -4.0895 16 6 0.6267 -10.1423 -3.9475 17 7 -0.5138 -10.5201 -3.4151 18 14 1.4362 -11.1920 -5.2637 19 1 2.3461 -12.1750 -4.6227 20 1 0.3911 -11.9136 -6.0334 21 1 2.2148 -10.3219 -6.1813 22 6 0.0701 -3.9141 -1.6723 23 6 0.4356 -2.5820 -1.7273 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -0.2617 -2.1369 32 1 3.1263 -0.6443 -1.2951 33 1 3.4282 -2.7789 -0.1835 34 1 2.7727 -5.1500 -0.0766 35 1 0.9462 -6.7488 -0.1302 36 1 -0.5748 -6.3663 -0.9720 37 1 -1.0365 -9.0503 -1.6479 38 1 0.3824 -10.0839 -1.3541 39 1 0.1667 -8.5827 -0.4223 40 1 -0.9352 -11.3441 -3.7054 41 1 -0.8718 -4.2333 -2.0931 42 1 -0.2205 -1.8607 -2.1916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299554956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = -27.487562 kcal Electronic energy + Delta-G solvation = -20782.989975 eV Core-core repulsion = 17727.324256 eV Total energy + Delta-G solvation = -3055.665719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51900 -38.21357 -36.26472 -34.59727 -32.40794 -31.49467 -30.59155 -28.68582 -27.27299 -26.30465 -25.24410 -23.84470 -22.37631 -21.00356 -19.95363 -18.79675 -16.82748 -16.02093 -15.93482 -15.45342 -14.88948 -14.65621 -14.50606 -14.33166 -13.90259 -13.88526 -13.35700 -13.06191 -12.51889 -12.40485 -12.32081 -12.07043 -11.89514 -11.73544 -11.46780 -11.38140 -11.15911 -11.09335 -10.88929 -10.86170 -10.76578 -10.54227 -10.47629 -10.32664 -10.16932 -8.99519 -8.51626 -8.46361 -8.01186 -7.64081 -6.27548 -3.84068 1.71234 1.79709 3.18339 3.26651 3.32659 3.94868 4.04125 4.21347 4.72901 4.77159 4.86613 5.02314 5.12096 5.18532 5.25364 5.33090 5.37891 5.43485 5.51509 5.56872 5.69973 5.76993 5.82115 5.84859 5.89191 5.96042 5.99569 6.05987 6.09046 6.19699 6.23901 6.33237 6.45606 6.48869 6.78096 6.90386 6.91326 7.07804 7.25086 7.38735 7.59988 8.17507 8.53342 9.23645 9.47230 10.04049 10.76194 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043523 B = 0.003261 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.181597 B = 8583.060320 C = 8778.650655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.093 4.093 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.045 4.045 9 C -0.098 4.098 10 C 0.450 3.550 11 O -0.582 6.582 12 N -0.451 5.451 13 C 0.112 3.888 14 C -0.303 4.303 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.886 5.886 18 Si 0.926 3.074 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.105 4.105 23 C -0.116 4.116 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.117 0.883 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 15.582 9.315 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.045 4.045 9 C -0.138 4.138 10 C 0.238 3.762 11 O -0.466 6.466 12 N -0.170 5.170 13 C -0.031 4.031 14 C -0.431 4.431 15 H 0.115 0.885 16 C -0.174 4.174 17 N -0.526 5.526 18 Si 0.753 3.247 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.123 4.123 23 C -0.134 4.134 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.961 15.692 8.866 18.049 hybrid contribution 0.154 -0.869 -0.628 1.083 sum 1.115 14.823 8.238 16.995 Atomic orbital electron populations 1.21918 0.95216 1.02430 1.01191 1.21081 0.96149 0.95538 0.98189 1.21856 1.00855 0.96130 1.01605 1.20624 1.00805 0.91583 0.97995 1.19684 0.95013 0.95024 0.99617 1.20863 0.99136 0.93027 1.00617 1.20925 0.95806 0.95592 1.00065 1.19440 0.94342 0.94278 0.96444 1.20661 1.02110 0.92042 0.98989 1.19915 0.85738 0.82175 0.88370 1.90539 1.44815 1.65532 1.45708 1.43601 1.48440 1.06062 1.18922 1.21505 0.97286 0.96865 0.87493 1.19661 1.14438 1.04906 1.04140 0.88461 1.25331 0.95118 0.98538 0.98421 1.69994 1.15166 1.23853 1.43540 0.85926 0.78664 0.79658 0.80466 1.20425 1.20972 1.19400 1.20956 0.99896 0.92864 0.98617 1.20878 0.96388 0.95603 1.00486 0.93160 0.92894 0.91828 0.91184 0.92833 0.92790 0.92754 0.91316 0.91347 0.86752 0.86574 0.89678 0.89480 0.92443 0.91337 0.95545 0.92346 0.86478 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.76 37.16 0.33 -1.07 16 2 C -0.09 -0.85 2.91 -90.62 -0.26 -1.11 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.07 -0.78 4.84 -27.88 -0.14 -0.92 16 5 C -0.09 -1.28 4.71 -104.62 -0.49 -1.78 16 6 C -0.12 -1.72 9.70 -39.58 -0.38 -2.11 16 7 C -0.11 -1.75 9.70 -39.58 -0.38 -2.13 16 8 C -0.04 -0.80 4.37 -104.62 -0.46 -1.26 16 9 C -0.10 -1.84 4.35 -29.03 -0.13 -1.96 16 10 C 0.45 11.16 7.62 -10.98 -0.08 11.08 16 11 O -0.58 -16.58 15.73 5.54 0.09 -16.49 16 12 N -0.45 -11.75 3.02 -122.20 -0.37 -12.12 16 13 C 0.11 2.52 8.52 59.84 0.51 3.03 16 14 C -0.30 -8.63 9.29 -14.93 -0.14 -8.77 16 15 H 0.10 2.91 7.41 -52.49 -0.39 2.52 16 16 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 17 N -0.89 -23.88 10.62 55.50 0.59 -23.29 16 18 Si 0.93 21.12 29.57 -169.99 -5.03 16.10 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 22 C -0.11 -1.77 9.70 -39.58 -0.38 -2.15 16 23 C -0.12 -1.69 7.96 -39.58 -0.32 -2.00 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 6.27 -51.93 -0.33 0.34 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.08 1.40 7.35 -51.93 -0.38 1.02 16 36 H 0.09 1.49 8.05 -51.93 -0.42 1.08 16 37 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 38 H 0.07 1.62 7.06 -51.93 -0.37 1.25 16 39 H 0.03 0.48 6.36 -51.92 -0.33 0.15 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -31.71 342.59 -8.44 -40.15 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.80 Total: 1.77 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.08 Total: -11.27 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.22 Total: -35.41 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.09 Total: -16.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.71 -8.44 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299554956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.660 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds