Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 C 1.52998 * 109.47287 * 240.00092 * 2 1 3 5 5 C 1.50699 * 109.46972 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00001 * 269.73003 * 5 4 2 7 7 C 1.38233 * 120.00033 * 179.77015 * 6 5 4 8 8 C 1.38235 * 119.99887 * 0.47718 * 7 6 5 9 9 C 1.50704 * 119.99799 * 179.77514 * 8 7 6 10 10 C 1.50702 * 109.46922 * 270.02016 * 9 8 7 11 11 O 1.21296 * 119.99791 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00036 * 180.02562 * 10 9 8 13 13 C 1.46491 * 119.99997 * 359.97438 * 12 10 9 14 14 C 1.37095 * 119.99835 * 180.02562 * 12 10 9 15 15 H 1.07994 * 120.00507 * 22.39959 * 14 12 10 16 16 C 1.38952 * 119.99618 * 202.41067 * 14 12 10 17 17 N 1.31411 * 120.00387 * 11.58307 * 16 14 12 18 18 Si 1.86807 * 119.99832 * 191.58960 * 16 14 12 19 19 H 1.48498 * 109.47115 * 89.99534 * 18 16 14 20 20 H 1.48499 * 109.46889 * 209.99503 * 18 16 14 21 21 H 1.48502 * 109.47197 * 329.99635 * 18 16 14 22 22 C 1.38228 * 120.00179 * 359.79579 * 8 7 6 23 23 C 1.38233 * 120.00108 * 89.99926 * 5 4 2 24 24 H 1.09003 * 109.47248 * 300.00364 * 1 2 3 25 25 H 1.09001 * 109.47009 * 60.00033 * 1 2 3 26 26 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47171 * 119.99648 * 2 1 3 28 28 H 1.09003 * 109.47398 * 59.99727 * 3 2 1 29 29 H 1.08996 * 109.47152 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47193 * 299.99854 * 3 2 1 31 31 H 1.08995 * 109.47093 * 54.99662 * 4 2 1 32 32 H 1.09001 * 109.47178 * 174.99970 * 4 2 1 33 33 H 1.08004 * 119.99830 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.00092 * 180.25271 * 7 6 5 35 35 H 1.08995 * 109.47468 * 30.01748 * 9 8 7 36 36 H 1.09001 * 109.47093 * 150.02232 * 9 8 7 37 37 H 1.09001 * 109.47085 * 92.16173 * 13 12 10 38 38 H 1.08999 * 109.47599 * 212.15857 * 13 12 10 39 39 H 1.09007 * 109.47224 * 332.16302 * 13 12 10 40 40 H 0.96992 * 120.00434 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.00472 * 179.97438 * 22 8 7 42 42 H 1.07992 * 119.99932 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 2.4840 -3.0974 -0.5999 7 6 2.1162 -4.4286 -0.5403 8 6 0.9102 -4.8372 -1.0784 9 6 0.5116 -6.2893 -1.0179 10 6 1.0139 -6.9998 -2.2483 11 8 1.6350 -6.3873 -3.0912 12 7 0.7731 -8.3157 -2.4122 13 6 0.0235 -9.0555 -1.3940 14 6 1.2306 -8.9621 -3.5313 15 1 2.0601 -8.5540 -4.0895 16 6 0.6267 -10.1423 -3.9475 17 7 -0.5138 -10.5201 -3.4151 18 14 1.4362 -11.1920 -5.2637 19 1 2.3461 -12.1750 -4.6227 20 1 0.3911 -11.9136 -6.0334 21 1 2.2148 -10.3219 -6.1813 22 6 0.0701 -3.9141 -1.6723 23 6 0.4356 -2.5820 -1.7273 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6054 -0.2617 -2.1369 32 1 3.1263 -0.6443 -1.2951 33 1 3.4282 -2.7789 -0.1835 34 1 2.7727 -5.1500 -0.0766 35 1 0.9462 -6.7488 -0.1302 36 1 -0.5748 -6.3663 -0.9720 37 1 -1.0365 -9.0503 -1.6479 38 1 0.3824 -10.0839 -1.3541 39 1 0.1667 -8.5827 -0.4223 40 1 -0.9352 -11.3441 -3.7054 41 1 -0.8718 -4.2333 -2.0931 42 1 -0.2205 -1.8607 -2.1916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299554956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = -43.786065 kcal Electronic energy + Delta-G solvation = -20783.696731 eV Core-core repulsion = 17727.324256 eV Total energy + Delta-G solvation = -3056.372475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88510 -39.87842 -37.24575 -36.54731 -33.90072 -33.29481 -31.77509 -29.98056 -28.13604 -27.93568 -26.72640 -25.50198 -23.56039 -22.22660 -20.80601 -20.53588 -18.88176 -17.86958 -17.09774 -16.76326 -16.43323 -16.18735 -15.83244 -15.62932 -15.30652 -15.11593 -14.38221 -14.23622 -14.20750 -13.82843 -13.45422 -13.26399 -13.07356 -13.05355 -12.98293 -12.85414 -12.66231 -12.55215 -12.37980 -12.19806 -12.11356 -11.80147 -11.64860 -11.45781 -11.43758 -11.01834 -10.38770 -9.71926 -9.68252 -9.29739 -8.32544 -5.98402 0.49664 0.59345 1.36299 1.39324 1.51792 2.04730 2.27432 2.81893 3.09103 3.26033 3.81929 3.91676 3.97815 4.09585 4.14163 4.21493 4.24616 4.38973 4.45845 4.55895 4.68956 4.70355 4.74761 4.82291 4.87288 4.90637 5.01005 5.05397 5.10775 5.12243 5.20994 5.27127 5.37564 5.39714 5.44065 5.48641 5.52161 5.59311 5.79241 5.80890 6.09048 6.22051 6.49707 7.17831 7.48509 8.05550 8.68862 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043523 B = 0.003261 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.181597 B = 8583.060320 C = 8778.650655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.088 4.088 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.074 4.074 9 C -0.084 4.084 10 C 0.442 3.558 11 O -0.628 6.628 12 N -0.468 5.468 13 C 0.121 3.879 14 C -0.343 4.343 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.898 5.898 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.278 1.278 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 16.654 10.138 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.074 4.074 9 C -0.123 4.123 10 C 0.232 3.768 11 O -0.515 6.515 12 N -0.187 5.187 13 C -0.022 4.022 14 C -0.471 4.471 15 H 0.086 0.914 16 C -0.205 4.205 17 N -0.537 5.537 18 Si 0.813 3.187 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.203 1.203 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.076 16.752 9.724 19.399 hybrid contribution 0.098 -1.125 -0.878 1.430 sum 1.175 15.627 8.846 17.995 Atomic orbital electron populations 1.21918 0.95269 1.01623 1.01969 1.21046 0.96069 0.96378 0.97105 1.21825 1.01191 0.94898 1.02209 1.20692 1.01509 0.89553 0.99075 1.20072 0.94228 0.96630 0.97866 1.21191 1.00196 0.92404 1.00337 1.21129 0.95525 0.96815 1.00397 1.19501 0.95602 0.93857 0.98469 1.20566 1.02886 0.92326 0.96557 1.20936 0.84430 0.81802 0.89663 1.90490 1.46671 1.66482 1.47868 1.43887 1.48749 1.06950 1.19097 1.21468 0.95930 0.96174 0.88608 1.19593 1.15091 1.06551 1.05912 0.91387 1.26079 0.95461 0.98810 1.00188 1.70066 1.15455 1.24145 1.44001 0.85001 0.78032 0.77910 0.77794 1.18961 1.19707 1.20291 1.21126 1.00070 0.93937 0.99085 1.21139 0.97117 0.95114 1.00261 0.92267 0.92317 0.93371 0.91631 0.92078 0.92275 0.92345 0.90661 0.90411 0.84349 0.86084 0.87190 0.87924 0.93532 0.92928 0.91139 0.91730 0.86672 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.76 71.98 0.63 -1.85 16 2 C -0.09 -1.42 2.91 -10.79 -0.03 -1.45 16 3 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 4 C -0.07 -1.36 4.84 29.85 0.14 -1.21 16 5 C -0.09 -2.28 4.71 -19.87 -0.09 -2.37 16 6 C -0.12 -3.43 9.70 22.27 0.22 -3.21 16 7 C -0.12 -3.93 9.70 22.27 0.22 -3.71 16 8 C -0.07 -2.64 4.37 -19.87 -0.09 -2.73 16 9 C -0.08 -3.10 4.35 29.10 0.13 -2.98 16 10 C 0.44 22.34 7.62 87.66 0.67 23.01 16 11 O -0.63 -37.09 15.73 -3.08 -0.05 -37.14 16 12 N -0.47 -24.84 3.02 -658.90 -1.99 -26.83 16 13 C 0.12 5.41 8.52 127.77 1.09 6.50 16 14 C -0.34 -20.14 9.29 84.04 0.78 -19.36 16 15 H 0.07 4.29 7.41 -2.91 -0.02 4.27 16 16 C 0.00 -0.22 5.11 84.93 0.43 0.22 16 17 N -0.90 -48.37 10.62 21.66 0.23 -48.14 16 18 Si 0.99 43.48 29.57 68.60 2.03 45.51 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.12 -4.17 9.70 22.27 0.22 -3.95 16 23 C -0.12 -3.35 7.96 22.27 0.18 -3.17 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.94 6.27 -2.39 -0.01 0.93 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 32 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.11 3.46 7.35 -2.39 -0.02 3.44 16 36 H 0.10 3.44 8.05 -2.39 -0.02 3.42 16 37 H 0.05 2.15 7.54 -2.39 -0.02 2.13 16 38 H 0.05 2.48 7.06 -2.39 -0.02 2.46 16 39 H 0.07 2.46 6.36 -2.38 -0.02 2.45 16 40 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.13 3.16 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -69.97 342.59 6.35 -63.62 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.98 Total: 20.41 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 5.15 Total: -17.44 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -1.76 Total: -74.97 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.05 Total: -37.14 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -69.97 6.35 -63.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299554956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.837 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds