Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 C 1.50702 * 109.46822 * 180.02562 * 10 9 8 12 12 O 1.21293 * 119.99955 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.37087 * 120.00048 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00476 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00421 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99259 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00506 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47000 * 60.00041 * 18 16 14 20 20 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47201 * 299.99940 * 18 16 14 22 22 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 23 23 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 24 24 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 25 25 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 26 26 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 29 29 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 30 30 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 31 31 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 32 32 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 33 33 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 36 36 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 37 37 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 38 38 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 39 39 H 0.97001 * 119.99437 * 359.97438 * 13 11 10 40 40 H 0.96999 * 119.99608 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.00299 * 179.97438 * 22 8 7 42 42 H 1.07997 * 120.00423 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 6 5.2915 -4.0930 5.6578 12 8 4.6332 -4.0698 6.6763 13 7 6.4670 -4.7518 5.6301 14 6 6.9179 -5.3969 6.7525 15 1 6.3314 -5.3770 7.6592 16 6 8.1296 -6.0765 6.7238 17 7 8.8430 -6.1012 5.6204 18 14 8.7443 -6.9550 8.2534 19 1 7.7609 -7.9918 8.6577 20 1 10.0506 -7.5988 7.9632 21 1 8.9097 -5.9733 9.3553 22 6 3.2880 -0.6902 3.2690 23 6 2.8265 -0.0384 2.1407 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7218 -1.2489 33 1 1.0771 -2.5585 0.7387 34 1 1.8973 -3.7190 2.7496 35 1 3.5709 -2.0006 5.5310 36 1 2.7277 -3.4824 5.0198 37 1 4.6742 -4.1053 3.6153 38 1 5.5172 -2.6234 4.1266 39 1 6.9936 -4.7700 4.8156 40 1 9.6887 -6.5759 5.6003 41 1 3.9085 -0.1651 3.9801 42 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299567771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -47.181542 kcal Electronic energy + Delta-G solvation = -20319.365271 eV Core-core repulsion = 17262.845557 eV Total energy + Delta-G solvation = -3056.519714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96319 -38.23893 -36.74032 -34.03563 -32.80327 -31.18356 -31.05104 -28.87481 -27.56266 -27.46251 -25.43693 -23.67332 -22.28165 -21.31972 -19.23913 -19.01134 -17.79703 -16.64116 -15.77094 -15.51280 -14.83820 -14.52963 -14.45844 -14.32066 -13.99543 -13.83662 -13.69990 -13.37884 -13.01941 -12.63358 -12.36016 -12.19616 -12.08873 -11.91427 -11.70573 -11.46657 -11.39682 -11.29628 -11.05360 -11.03491 -10.67573 -10.55972 -10.42491 -10.37707 -10.18713 -9.49010 -8.81367 -8.53433 -8.22666 -7.95152 -6.39876 -3.80836 1.43945 1.50713 3.21086 3.26548 3.31152 3.82359 3.94691 4.19640 4.43475 4.56622 4.79066 4.89268 5.03579 5.09088 5.11256 5.27064 5.33029 5.35544 5.38949 5.53254 5.55230 5.56015 5.64708 5.66611 5.68931 5.75018 5.81005 5.84862 6.00045 6.04762 6.08639 6.12754 6.20699 6.39345 6.47717 6.57476 6.63820 6.67180 6.88114 7.12560 7.56532 8.07589 8.62874 9.19147 9.57135 10.08513 10.77779 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.002796 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.853690 B =10011.870169 C =10196.723991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.075 4.075 9 C -0.061 4.061 10 C -0.123 4.123 11 C 0.439 3.561 12 O -0.598 6.598 13 N -0.563 5.563 14 C -0.302 4.302 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.116 4.116 23 C -0.121 4.121 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 12.156 -14.168 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.075 4.075 9 C -0.099 4.099 10 C -0.163 4.163 11 C 0.226 3.774 12 O -0.484 6.484 13 N -0.198 5.198 14 C -0.431 4.431 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.134 4.134 23 C -0.138 4.138 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.957 12.068 -13.526 22.282 hybrid contribution 0.806 -0.548 0.205 0.995 sum -12.151 11.521 -13.322 21.397 Atomic orbital electron populations 1.21882 0.93914 1.02014 1.01669 1.19470 0.95525 0.94961 0.92907 1.21956 1.01279 0.95079 1.01745 1.21886 1.01363 1.00198 0.96088 1.19715 0.98553 0.94178 0.95886 1.20897 1.00516 0.94287 0.97572 1.21075 0.98146 0.99859 0.94259 1.20108 0.96646 0.94131 0.96587 1.20298 0.96381 0.99546 0.93686 1.21447 0.97028 0.99976 0.97886 1.19989 0.83333 0.84333 0.89770 1.90507 1.58009 1.65880 1.34046 1.41917 1.18178 1.45752 1.14000 1.19678 1.03530 1.27718 0.92196 0.88006 1.25273 0.96262 0.98009 0.98410 1.69614 1.14541 1.43318 1.26833 0.85921 0.77786 0.79448 0.81083 1.19901 1.20964 1.19896 1.21103 1.00076 0.94501 0.97687 1.21122 0.98383 0.99938 0.94406 0.92540 0.92569 0.92457 0.92218 0.92587 0.92293 0.92437 0.92571 0.92426 0.86556 0.86102 0.90510 0.90510 0.90522 0.90514 0.77364 0.91820 0.86105 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.14 -1.09 7.13 37.16 0.26 -0.83 16 4 C -0.14 -1.11 8.29 37.16 0.31 -0.80 16 5 C -0.08 -0.91 4.76 -104.62 -0.50 -1.41 16 6 C -0.11 -1.31 8.71 -39.59 -0.34 -1.66 16 7 C -0.12 -1.49 9.70 -39.59 -0.38 -1.88 16 8 C -0.07 -1.05 5.13 -104.62 -0.54 -1.59 16 9 C -0.06 -1.01 4.63 -27.88 -0.13 -1.14 16 10 C -0.12 -2.22 5.68 -27.88 -0.16 -2.38 16 11 C 0.44 10.59 7.78 -10.98 -0.09 10.50 16 12 O -0.60 -16.45 15.56 5.55 0.09 -16.37 16 13 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16 14 C -0.30 -8.57 9.68 -14.94 -0.14 -8.71 16 15 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 16 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 17 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 18 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 23 C -0.12 -1.39 8.98 -39.58 -0.36 -1.74 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 27 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 30 H 0.06 0.46 7.39 -51.93 -0.38 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.12 1.12 7.10 -52.49 -0.37 0.75 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.18 5.90 -52.49 -0.31 0.87 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -31.04 344.95 -8.14 -39.18 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.70 Total: 8.75 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.37 Total: -14.15 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.67 Total: -38.88 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -8.14 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299567771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.999 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds