Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 C 1.50702 * 109.46822 * 180.02562 * 10 9 8 12 12 O 1.21293 * 119.99955 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.37087 * 120.00048 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00476 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00421 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99259 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00506 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47000 * 60.00041 * 18 16 14 20 20 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47201 * 299.99940 * 18 16 14 22 22 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 23 23 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 24 24 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 25 25 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 26 26 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 29 29 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 30 30 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 31 31 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 32 32 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 33 33 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 34 34 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 36 36 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 37 37 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 38 38 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 39 39 H 0.97001 * 119.99437 * 359.97438 * 13 11 10 40 40 H 0.96999 * 119.99608 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.00299 * 179.97438 * 22 8 7 42 42 H 1.07997 * 120.00423 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 6 5.2915 -4.0930 5.6578 12 8 4.6332 -4.0698 6.6763 13 7 6.4670 -4.7518 5.6301 14 6 6.9179 -5.3969 6.7525 15 1 6.3314 -5.3770 7.6592 16 6 8.1296 -6.0765 6.7238 17 7 8.8430 -6.1012 5.6204 18 14 8.7443 -6.9550 8.2534 19 1 7.7609 -7.9918 8.6577 20 1 10.0506 -7.5988 7.9632 21 1 8.9097 -5.9733 9.3553 22 6 3.2880 -0.6902 3.2690 23 6 2.8265 -0.0384 2.1407 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7218 -1.2489 33 1 1.0771 -2.5585 0.7387 34 1 1.8973 -3.7190 2.7496 35 1 3.5709 -2.0006 5.5310 36 1 2.7277 -3.4824 5.0198 37 1 4.6742 -4.1053 3.6153 38 1 5.5172 -2.6234 4.1266 39 1 6.9936 -4.7700 4.8156 40 1 9.6887 -6.5759 5.6003 41 1 3.9085 -0.1651 3.9801 42 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299567771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -63.655212 kcal Electronic energy + Delta-G solvation = -20320.079622 eV Core-core repulsion = 17262.845557 eV Total energy + Delta-G solvation = -3057.234066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89785 -40.10383 -37.64970 -36.05252 -34.12733 -33.24792 -31.96225 -30.10051 -28.18839 -28.05552 -27.23460 -25.15012 -23.19897 -22.42417 -20.91633 -20.01103 -19.86315 -17.95881 -17.12136 -16.66869 -16.56457 -15.85443 -15.79962 -15.68375 -15.11055 -14.90426 -14.54234 -14.40161 -14.31169 -13.81778 -13.72446 -13.54911 -13.16619 -12.93441 -12.83043 -12.59548 -12.49374 -12.43493 -12.38794 -12.31435 -12.11850 -11.86344 -11.75577 -11.53216 -11.42149 -11.29212 -10.40958 -10.04633 -9.75666 -9.34462 -8.48496 -5.98158 0.46998 0.56342 1.38624 1.40389 1.51913 2.02583 2.28989 2.85410 3.18615 3.24203 3.71397 3.85130 4.03213 4.08210 4.16475 4.19626 4.23942 4.36091 4.43990 4.51895 4.62723 4.66736 4.79621 4.82793 4.84495 4.94317 5.00075 5.04793 5.07005 5.07579 5.20121 5.26292 5.26597 5.31855 5.38966 5.42006 5.48436 5.64804 5.79499 5.82700 5.97444 6.18042 6.56185 7.09145 7.53093 8.08035 8.68705 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.002796 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.853690 B =10011.870169 C =10196.723991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.091 4.091 9 C -0.051 4.051 10 C -0.109 4.109 11 C 0.436 3.564 12 O -0.636 6.636 13 N -0.573 5.573 14 C -0.339 4.339 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.920 5.920 18 Si 0.995 3.005 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.125 4.125 23 C -0.124 4.124 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.124 0.876 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 12.814 -15.764 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.089 4.089 10 C -0.149 4.149 11 C 0.224 3.776 12 O -0.525 6.525 13 N -0.209 5.209 14 C -0.468 4.468 15 H 0.097 0.903 16 C -0.213 4.213 17 N -0.561 5.561 18 Si 0.818 3.182 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.143 4.143 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.211 12.735 -15.151 23.796 hybrid contribution 0.833 -0.701 0.633 1.259 sum -12.378 12.035 -14.518 22.557 Atomic orbital electron populations 1.21876 0.93118 1.02203 1.02168 1.19545 0.96113 0.95347 0.91929 1.21961 1.01174 0.94471 1.02471 1.21883 1.00861 1.00353 0.96358 1.20077 0.97417 0.94079 0.96419 1.21122 1.00394 0.94665 0.97294 1.21201 0.98164 1.00241 0.94650 1.19884 0.98402 0.94736 0.96132 1.20124 0.95142 0.98889 0.94733 1.21401 0.98137 1.00248 0.95111 1.21026 0.82233 0.83245 0.91065 1.90475 1.58853 1.66965 1.36170 1.42008 1.18962 1.46256 1.13631 1.19679 1.04592 1.30017 0.92545 0.90263 1.26095 0.95733 0.97976 1.01507 1.69677 1.14811 1.43363 1.28255 0.84969 0.77655 0.78241 0.77355 1.19613 1.19344 1.19603 1.21232 1.00389 0.94199 0.98470 1.21367 0.98115 1.00840 0.93860 0.93098 0.91055 0.92459 0.92418 0.91210 0.92299 0.92466 0.91044 0.93208 0.84704 0.85757 0.91849 0.91847 0.88696 0.88691 0.76940 0.91198 0.85765 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.29 71.98 0.60 -1.17 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.48 16 3 C -0.14 -1.81 7.13 71.98 0.51 -1.30 16 4 C -0.14 -1.85 8.29 71.98 0.60 -1.25 16 5 C -0.08 -1.59 4.76 -19.86 -0.09 -1.68 16 6 C -0.12 -2.47 8.71 22.27 0.19 -2.28 16 7 C -0.12 -3.12 9.70 22.27 0.22 -2.90 16 8 C -0.09 -2.54 5.13 -19.87 -0.10 -2.64 16 9 C -0.05 -1.70 4.63 29.85 0.14 -1.56 16 10 C -0.11 -3.93 5.68 29.85 0.17 -3.76 16 11 C 0.44 21.49 7.78 87.66 0.68 22.17 16 12 O -0.64 -36.19 15.56 -3.07 -0.05 -36.24 16 13 N -0.57 -30.41 5.29 -306.97 -1.62 -32.03 16 14 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 15 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 16 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 17 N -0.92 -50.56 13.05 21.67 0.28 -50.28 16 18 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C -0.12 -3.13 9.70 22.27 0.22 -2.92 16 23 C -0.12 -2.64 8.98 22.27 0.20 -2.44 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.74 7.39 -2.39 -0.02 0.72 16 27 H 0.06 0.75 7.52 -2.39 -0.02 0.73 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.74 7.51 -2.39 -0.02 0.73 16 30 H 0.06 0.77 7.39 -2.39 -0.02 0.75 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 2.30 7.10 -2.91 -0.02 2.28 16 34 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 36 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 40 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.14 2.41 5.90 -2.91 -0.02 2.39 16 Total: -1.00 -66.86 344.95 5.47 -61.39 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.27 Total: 33.06 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.56 Total: -21.36 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.34 Total: -82.31 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.05 Total: -36.24 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.86 5.47 -61.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299567771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.263 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds