Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 C 1.52995 * 109.47446 * 239.99600 * 2 1 3 5 5 C 1.53007 * 109.47026 * 119.99603 * 2 1 3 6 6 C 1.52995 * 109.46903 * 60.00265 * 5 2 1 7 7 C 1.50703 * 109.46918 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99881 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.39939 * 119.99536 * 174.89167 * 9 7 6 11 11 C 1.39290 * 119.94275 * 145.78317 * 10 9 7 12 12 C 1.38484 * 120.42908 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.31841 * 359.97438 * 12 11 10 14 14 C 1.40737 * 119.88853 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.21051 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00031 * 205.17202 * 15 14 13 17 17 C 1.39928 * 120.00494 * 25.17660 * 15 14 13 18 18 N 1.30837 * 119.99653 * 16.79822 * 17 15 14 19 19 Si 1.86796 * 120.00405 * 196.80478 * 17 15 14 20 20 H 1.48500 * 109.46921 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47375 * 119.99803 * 19 17 15 22 22 H 1.48500 * 109.47055 * 239.99723 * 19 17 15 23 23 C 1.38237 * 119.94987 * 325.50684 * 10 9 7 24 24 H 1.08999 * 109.47093 * 299.99885 * 1 2 3 25 25 H 1.09005 * 109.46836 * 60.00280 * 1 2 3 26 26 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47154 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46552 * 299.99571 * 3 2 1 29 29 H 1.08991 * 109.47273 * 59.99924 * 3 2 1 30 30 H 1.09000 * 109.47239 * 299.99900 * 4 2 1 31 31 H 1.09005 * 109.47004 * 60.00223 * 4 2 1 32 32 H 1.09002 * 109.47601 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46732 * 299.99932 * 5 2 1 34 34 H 1.09002 * 109.46786 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47144 * 300.00015 * 6 5 2 36 36 H 1.08994 * 109.47216 * 60.00297 * 6 5 2 37 37 H 0.96997 * 120.00347 * 354.89176 * 9 7 6 38 38 H 1.08002 * 119.79121 * 359.97438 * 11 10 9 39 39 H 1.08003 * 119.84508 * 179.97438 * 12 11 10 40 40 H 1.08012 * 120.05656 * 179.97438 * 13 12 11 41 41 H 0.97000 * 119.99997 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.16288 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 6 2.0329 -2.8742 2.4796 8 8 2.7300 -2.2847 3.2779 9 7 1.7069 -4.1644 2.6931 10 6 2.2594 -4.8554 3.7774 11 6 1.5078 -5.8216 4.4420 12 6 2.0447 -6.5117 5.5158 13 6 3.3289 -6.2503 5.9381 14 6 4.1002 -5.2768 5.2763 15 6 5.4197 -5.0025 5.7046 16 1 5.8621 -4.0374 5.5064 17 6 6.1522 -5.9814 6.3851 18 7 5.7696 -7.2318 6.3432 19 14 7.6762 -5.5029 7.3535 20 1 7.8936 -4.0381 7.2424 21 1 7.4913 -5.8695 8.7806 22 1 8.8557 -6.2207 6.8069 23 6 3.5522 -4.5820 4.1835 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7209 -1.2494 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7216 1.2491 35 1 0.4400 -2.1637 1.2493 36 1 1.8934 -2.6775 0.3595 37 1 1.0894 -4.6141 2.0953 38 1 0.4997 -6.0339 4.1178 39 1 1.4533 -7.2587 6.0246 40 1 3.7433 -6.7908 6.7764 41 1 6.2772 -7.9104 6.8153 42 1 4.1372 -3.8359 3.6663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313433874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = -45.849208 kcal Electronic energy + Delta-G solvation = -20785.516609 eV Core-core repulsion = 17729.054670 eV Total energy + Delta-G solvation = -3056.461939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78706 -38.00646 -36.93910 -34.39153 -32.99470 -31.22052 -29.79183 -28.04814 -27.44699 -27.41316 -25.29285 -24.41088 -21.36514 -20.77032 -19.47322 -18.65447 -17.66116 -16.70076 -15.62036 -15.47169 -15.04052 -14.59444 -14.55173 -14.39166 -14.19850 -13.47411 -13.27741 -12.88555 -12.78753 -12.55579 -12.15295 -11.98537 -11.85310 -11.80091 -11.62148 -11.25252 -11.11180 -11.08250 -10.88513 -10.66289 -10.62653 -10.55140 -10.42893 -10.10509 -9.62140 -9.34270 -9.03820 -8.89207 -7.42129 -6.87950 -6.68500 -4.31020 2.65247 2.86114 3.11524 3.18540 3.21800 3.43152 3.71357 3.99128 4.63941 4.66276 4.67489 4.70964 5.11820 5.17959 5.27149 5.43781 5.48355 5.51256 5.62251 5.64208 5.75100 5.77122 5.79550 5.91930 5.95685 6.07763 6.17705 6.27646 6.31425 6.37232 6.42181 6.82675 7.05820 7.09012 7.11178 7.28525 7.60759 7.76946 8.00904 8.12831 8.22856 8.31049 8.67084 8.80538 8.97539 9.02081 10.24299 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.003748 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.527338 B = 7469.172242 C = 8361.203667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.093 4.093 6 C -0.142 4.142 7 C 0.501 3.499 8 O -0.519 6.519 9 N -0.672 5.672 10 C 0.151 3.849 11 C -0.263 4.263 12 C -0.093 4.093 13 C -0.173 4.173 14 C 0.120 3.880 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.210 4.210 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.279 0.721 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 8.729 -11.714 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.131 4.131 6 C -0.182 4.182 7 C 0.288 3.712 8 O -0.394 6.394 9 N -0.316 5.316 10 C 0.060 3.940 11 C -0.284 4.284 12 C -0.112 4.112 13 C -0.193 4.193 14 C 0.117 3.883 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.422 5.422 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.232 4.232 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.090 0.910 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.566 8.959 -11.099 16.146 hybrid contribution 0.303 -0.278 0.096 0.422 sum -7.263 8.680 -11.003 15.785 Atomic orbital electron populations 1.21949 0.94775 1.01850 1.01591 1.20589 0.95572 0.95597 0.95431 1.21851 1.01168 0.95256 1.01513 1.21953 1.01239 1.00299 0.96730 1.21389 1.01537 0.92992 0.97143 1.21813 1.02395 0.97332 0.96654 1.20750 0.81095 0.81695 0.87688 1.90743 1.36912 1.65557 1.46198 1.43536 1.47138 1.11590 1.29314 1.17457 0.92631 0.94687 0.89262 1.20044 0.98772 1.06136 1.03447 1.20462 0.95822 0.98486 0.96398 1.21344 0.92920 1.02726 1.02267 1.17494 0.92670 0.89647 0.88516 1.19616 0.97942 0.99927 1.31331 0.90353 1.25901 0.99241 0.94243 0.94772 1.69842 1.37833 1.00989 1.33500 0.86272 0.80652 0.80218 0.79660 1.18356 1.19718 1.20040 1.20969 0.93847 1.06904 1.01446 0.92601 0.92908 0.92382 0.92552 0.92870 0.92610 0.92355 0.92917 0.92517 0.91137 0.91035 0.89119 0.88939 0.76926 0.89372 0.89096 0.86338 0.91034 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.12 37.16 0.30 -0.88 16 2 C -0.07 -0.66 0.80 -154.51 -0.12 -0.79 16 3 C -0.14 -1.24 8.47 37.16 0.31 -0.92 16 4 C -0.15 -1.23 8.12 37.16 0.30 -0.93 16 5 C -0.09 -1.11 3.56 -26.73 -0.10 -1.21 16 6 C -0.14 -1.69 5.00 -27.88 -0.14 -1.83 16 7 C 0.50 8.89 7.56 -10.98 -0.08 8.81 16 8 O -0.52 -11.69 13.74 5.55 0.08 -11.61 16 9 N -0.67 -12.11 5.34 -9.91 -0.05 -12.16 16 10 C 0.15 3.50 6.25 -83.77 -0.52 2.98 16 11 C -0.26 -5.91 9.97 -39.10 -0.39 -6.29 16 12 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 13 C -0.17 -4.63 8.69 -38.84 -0.34 -4.96 16 14 C 0.12 3.36 5.57 -106.85 -0.59 2.76 16 15 C -0.46 -12.81 9.05 -37.74 -0.34 -13.16 16 16 H 0.08 2.17 7.90 -52.48 -0.41 1.75 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -21.00 10.94 55.55 0.61 -20.39 16 19 Si 0.91 19.34 29.59 -169.99 -5.03 14.31 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C -0.21 -5.57 8.39 -38.69 -0.32 -5.90 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 0.89 6.43 -51.93 -0.33 0.55 16 36 H 0.09 0.95 6.43 -51.93 -0.33 0.61 16 37 H 0.40 5.49 8.82 -40.82 -0.36 5.13 16 38 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 39 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.12 3.24 6.17 -52.48 -0.32 2.92 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.10 2.86 6.48 -52.48 -0.34 2.52 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -31.07 338.33 -8.38 -39.44 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.55 Total: 8.37 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.52 Total: -23.06 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.55 Total: -32.56 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.07 -8.38 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313433874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.406 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds