Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 C 1.52995 * 109.47446 * 239.99600 * 2 1 3 5 5 C 1.53007 * 109.47026 * 119.99603 * 2 1 3 6 6 C 1.52995 * 109.46903 * 60.00265 * 5 2 1 7 7 C 1.50703 * 109.46918 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99881 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.39939 * 119.99536 * 174.89167 * 9 7 6 11 11 C 1.39290 * 119.94275 * 145.78317 * 10 9 7 12 12 C 1.38484 * 120.42908 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.31841 * 359.97438 * 12 11 10 14 14 C 1.40737 * 119.88853 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.21051 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00031 * 205.17202 * 15 14 13 17 17 C 1.39928 * 120.00494 * 25.17660 * 15 14 13 18 18 N 1.30837 * 119.99653 * 16.79822 * 17 15 14 19 19 Si 1.86796 * 120.00405 * 196.80478 * 17 15 14 20 20 H 1.48500 * 109.46921 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47375 * 119.99803 * 19 17 15 22 22 H 1.48500 * 109.47055 * 239.99723 * 19 17 15 23 23 C 1.38237 * 119.94987 * 325.50684 * 10 9 7 24 24 H 1.08999 * 109.47093 * 299.99885 * 1 2 3 25 25 H 1.09005 * 109.46836 * 60.00280 * 1 2 3 26 26 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47154 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46552 * 299.99571 * 3 2 1 29 29 H 1.08991 * 109.47273 * 59.99924 * 3 2 1 30 30 H 1.09000 * 109.47239 * 299.99900 * 4 2 1 31 31 H 1.09005 * 109.47004 * 60.00223 * 4 2 1 32 32 H 1.09002 * 109.47601 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46732 * 299.99932 * 5 2 1 34 34 H 1.09002 * 109.46786 * 179.97438 * 5 2 1 35 35 H 1.09000 * 109.47144 * 300.00015 * 6 5 2 36 36 H 1.08994 * 109.47216 * 60.00297 * 6 5 2 37 37 H 0.96997 * 120.00347 * 354.89176 * 9 7 6 38 38 H 1.08002 * 119.79121 * 359.97438 * 11 10 9 39 39 H 1.08003 * 119.84508 * 179.97438 * 12 11 10 40 40 H 1.08012 * 120.05656 * 179.97438 * 13 12 11 41 41 H 0.97000 * 119.99997 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.16288 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2494 6 6 1.5300 -2.1637 1.2494 7 6 2.0329 -2.8742 2.4796 8 8 2.7300 -2.2847 3.2779 9 7 1.7069 -4.1644 2.6931 10 6 2.2594 -4.8554 3.7774 11 6 1.5078 -5.8216 4.4420 12 6 2.0447 -6.5117 5.5158 13 6 3.3289 -6.2503 5.9381 14 6 4.1002 -5.2768 5.2763 15 6 5.4197 -5.0025 5.7046 16 1 5.8621 -4.0374 5.5064 17 6 6.1522 -5.9814 6.3851 18 7 5.7696 -7.2318 6.3432 19 14 7.6762 -5.5029 7.3535 20 1 7.8936 -4.0381 7.2424 21 1 7.4913 -5.8695 8.7806 22 1 8.8557 -6.2207 6.8069 23 6 3.5522 -4.5820 4.1835 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7209 -1.2494 33 1 1.6766 -0.2073 2.1392 34 1 3.1300 -0.7216 1.2491 35 1 0.4400 -2.1637 1.2493 36 1 1.8934 -2.6775 0.3595 37 1 1.0894 -4.6141 2.0953 38 1 0.4997 -6.0339 4.1178 39 1 1.4533 -7.2587 6.0246 40 1 3.7433 -6.7908 6.7764 41 1 6.2772 -7.9104 6.8153 42 1 4.1372 -3.8359 3.6663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313433874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -63.572850 kcal Electronic energy + Delta-G solvation = -20786.285164 eV Core-core repulsion = 17729.054670 eV Total energy + Delta-G solvation = -3057.230494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28769 -39.28828 -38.39015 -36.18826 -34.82315 -32.33487 -31.76474 -29.78164 -28.10555 -28.07681 -27.28163 -25.60525 -23.08036 -22.62407 -21.06256 -19.60205 -19.35951 -18.11245 -17.42064 -16.89842 -16.64669 -16.42629 -15.66194 -15.40488 -15.16892 -14.97105 -14.70484 -14.33023 -14.21719 -13.84567 -13.53031 -13.36544 -13.03803 -12.91717 -12.79581 -12.68607 -12.65352 -12.50981 -12.19271 -12.01960 -11.95145 -11.54309 -11.45553 -11.39442 -11.38089 -11.15496 -10.86740 -10.59615 -9.41155 -8.75986 -8.61602 -6.38966 0.86773 0.98741 1.34910 1.45804 1.50566 1.84239 2.19829 2.30511 2.72112 3.67142 3.75593 3.82578 3.93652 4.11557 4.30528 4.43654 4.45944 4.62166 4.62697 4.69324 4.82999 4.86590 4.97130 5.04727 5.06986 5.08287 5.10558 5.12099 5.14374 5.20642 5.25816 5.29372 5.32664 5.41707 5.56534 5.58744 5.76375 5.86149 6.06638 6.10111 6.33946 6.66615 6.69208 6.92358 7.00002 7.38653 8.31883 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.003748 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.527338 B = 7469.172242 C = 8361.203667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.092 4.092 6 C -0.126 4.126 7 C 0.495 3.505 8 O -0.574 6.574 9 N -0.661 5.661 10 C 0.157 3.843 11 C -0.252 4.252 12 C -0.091 4.091 13 C -0.200 4.200 14 C 0.089 3.911 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.038 3.962 18 N -0.822 5.822 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.258 1.258 22 H -0.260 1.260 23 C -0.239 4.239 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.422 0.578 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.290 0.710 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 8.362 -13.207 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.203 4.203 5 C -0.130 4.130 6 C -0.165 4.165 7 C 0.285 3.715 8 O -0.452 6.452 9 N -0.307 5.307 10 C 0.064 3.936 11 C -0.273 4.273 12 C -0.110 4.110 13 C -0.220 4.220 14 C 0.087 3.913 15 C -0.534 4.534 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.448 5.448 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.182 1.182 22 H -0.185 1.185 23 C -0.261 4.261 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.607 8.574 -12.641 18.045 hybrid contribution 0.803 -0.142 0.481 0.947 sum -8.804 8.432 -12.160 17.219 Atomic orbital electron populations 1.21952 0.93385 1.02690 1.02068 1.20549 0.96587 0.95327 0.94185 1.21873 1.00683 0.95359 1.02059 1.21964 1.00700 1.00895 0.96695 1.21367 1.00022 0.93495 0.98088 1.21859 1.04233 0.96319 0.94115 1.21879 0.79729 0.81337 0.88584 1.90735 1.39251 1.66714 1.48483 1.43481 1.47167 1.11705 1.28366 1.17566 0.91511 0.94408 0.90139 1.20495 1.00284 1.04467 1.02037 1.20853 0.94842 0.98715 0.96593 1.21313 0.94494 1.03441 1.02736 1.17832 0.93312 0.90764 0.89441 1.19762 0.99052 1.00161 1.34415 0.92095 1.26695 1.02248 0.93779 0.94933 1.69864 1.39294 1.01783 1.33827 0.85180 0.76727 0.79397 0.78493 1.19049 1.18213 1.18493 1.20937 0.95739 1.07344 1.02091 0.93127 0.91524 0.91326 0.93438 0.91239 0.93134 0.91425 0.91455 0.93506 0.93034 0.93594 0.85658 0.86279 0.74000 0.84935 0.85858 0.87773 0.89966 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.12 71.98 0.58 -1.33 16 2 C -0.07 -1.10 0.80 -52.18 -0.04 -1.14 16 3 C -0.14 -2.37 8.47 71.98 0.61 -1.76 16 4 C -0.15 -2.09 8.12 71.98 0.58 -1.50 16 5 C -0.09 -2.16 3.56 30.59 0.11 -2.05 16 6 C -0.13 -2.72 5.00 29.85 0.15 -2.57 16 7 C 0.49 17.28 7.56 87.66 0.66 17.94 16 8 O -0.57 -26.86 13.74 -3.04 -0.04 -26.90 16 9 N -0.66 -22.66 5.34 -303.65 -1.62 -24.28 16 10 C 0.16 7.20 6.25 38.10 0.24 7.43 16 11 C -0.25 -10.72 9.97 22.58 0.23 -10.49 16 12 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 13 C -0.20 -10.99 8.69 22.75 0.20 -10.79 16 14 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 15 C -0.50 -29.96 9.05 23.46 0.21 -29.75 16 16 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 17 C 0.04 2.05 5.16 85.25 0.44 2.49 16 18 N -0.82 -44.47 10.94 21.82 0.24 -44.23 16 19 Si 0.98 40.73 29.59 68.60 2.03 42.76 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.24 -13.26 8.39 22.85 0.19 -13.07 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.84 6.43 -2.39 -0.02 0.82 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.13 1.92 6.43 -2.39 -0.02 1.90 16 36 H 0.12 2.02 6.43 -2.39 -0.02 2.01 16 37 H 0.42 10.13 8.82 -92.71 -0.82 9.31 16 38 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 40 H 0.10 5.91 6.17 -2.90 -0.02 5.90 16 41 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 42 H 0.08 4.79 6.48 -2.91 -0.02 4.77 16 Total: -1.00 -72.67 338.33 5.06 -67.60 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.19 Total: 30.51 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 4.27 Total: -45.46 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.38 Total: -68.51 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.04 Total: -26.90 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -72.67 5.06 -67.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313433874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.031 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds