Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.48730 * 2 1 4 4 C 1.53089 * 109.48142 * 120.02559 * 2 1 3 5 5 C 1.53177 * 109.16302 * 177.59275 * 4 2 1 6 6 H 1.08999 * 109.54332 * 62.97709 * 5 4 2 7 7 N 1.46501 * 109.54172 * 183.15412 * 5 4 2 8 8 C 1.39677 * 119.99815 * 204.82359 * 7 5 4 9 9 C 1.39338 * 119.95548 * 0.02562 * 8 7 5 10 10 C 1.38470 * 120.42722 * 180.02562 * 9 8 7 11 11 C 1.37696 * 120.32420 * 359.71818 * 10 9 8 12 12 C 1.40747 * 119.89205 * 0.53942 * 11 10 9 13 13 C 1.41410 * 120.20461 * 179.73722 * 12 11 10 14 14 H 1.08000 * 119.99884 * 206.27028 * 13 12 11 15 15 C 1.39928 * 119.99926 * 26.27798 * 13 12 11 16 16 N 1.30840 * 119.99343 * 203.66151 * 15 13 12 17 17 Si 1.86795 * 120.00223 * 23.66205 * 15 13 12 18 18 H 1.48499 * 109.46871 * 263.27849 * 17 15 13 19 19 H 1.48494 * 109.47296 * 23.28125 * 17 15 13 20 20 H 1.48499 * 109.46874 * 143.28083 * 17 15 13 21 21 C 1.38285 * 119.95063 * 180.02562 * 8 7 5 22 22 C 1.53178 * 109.10837 * 303.06610 * 5 4 2 23 23 C 1.53097 * 109.15723 * 56.84909 * 22 5 4 24 24 O 1.42899 * 109.47890 * 239.97310 * 2 1 3 25 25 H 1.09000 * 109.46896 * 299.97448 * 1 2 3 26 26 H 1.09007 * 109.46865 * 59.96803 * 1 2 3 27 27 H 1.08996 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46922 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47080 * 300.02792 * 3 2 1 30 30 H 1.08999 * 109.47634 * 60.02832 * 3 2 1 31 31 H 1.09000 * 109.52169 * 57.68941 * 4 2 1 32 32 H 1.09003 * 109.52404 * 297.50124 * 4 2 1 33 33 H 0.96999 * 120.00339 * 24.82221 * 7 5 4 34 34 H 1.07998 * 119.78668 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.84170 * 180.02562 * 10 9 8 36 36 H 1.08004 * 120.05441 * 180.27706 * 11 10 9 37 37 H 0.96995 * 119.99774 * 353.17024 * 16 15 13 38 38 H 1.07996 * 120.16177 * 0.02562 * 21 8 7 39 39 H 1.09005 * 109.52078 * 176.84222 * 22 5 4 40 40 H 1.09001 * 109.52200 * 297.02627 * 22 5 4 41 41 H 1.09005 * 109.48329 * 182.49519 * 23 22 5 42 42 H 1.08995 * 109.41183 * 62.50560 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9690 0.2436 1.2424 7 7 4.0658 -1.5258 2.3660 8 6 5.3543 -1.2933 2.8524 9 6 6.1682 -0.3426 2.2398 10 6 7.4474 -0.1046 2.7136 11 6 7.9273 -0.8014 3.7999 12 6 7.1187 -1.7687 4.4257 13 6 7.6069 -2.4921 5.5384 14 1 7.2173 -3.4756 5.7562 15 6 8.5946 -1.9337 6.3573 16 7 9.3692 -2.7105 7.0704 17 14 8.8072 -0.0794 6.4324 18 1 9.8934 0.3321 5.5071 19 1 7.5389 0.5809 6.0317 20 1 9.1585 0.3228 7.8180 21 6 5.8204 -2.0069 3.9413 22 6 4.0195 -1.4587 -0.0809 23 6 3.4308 -0.7092 -1.2790 24 8 2.0065 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5144 -0.8898 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6768 1.9565 -0.8898 30 1 1.6777 1.9563 0.8902 31 1 1.6444 -1.7374 1.2710 32 1 1.7148 -0.1842 2.1399 33 1 3.4985 -2.1872 2.7923 34 1 5.7993 0.2116 1.3895 35 1 8.0700 0.6348 2.2318 36 1 8.9240 -0.6091 4.1686 37 1 9.1963 -3.6641 7.1091 38 1 5.1907 -2.7443 4.4168 39 1 5.1078 -1.4470 -0.1412 40 1 3.6645 -2.4893 -0.0872 41 1 3.7100 -1.2202 -2.2005 42 1 3.8192 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313441050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -42.669301 kcal Electronic energy + Delta-G solvation = -21462.298840 eV Core-core repulsion = 18405.974791 eV Total energy + Delta-G solvation = -3056.324048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22248 -37.99627 -35.54113 -33.76036 -33.44026 -31.57797 -30.04027 -28.65077 -27.52617 -26.91982 -24.88024 -23.69635 -21.91807 -21.07451 -19.98609 -19.22129 -18.04510 -16.50041 -16.20077 -15.98365 -15.22080 -14.88922 -14.71949 -14.20749 -13.91426 -13.76909 -13.41036 -13.16331 -12.73324 -12.49420 -12.34061 -12.25384 -12.11467 -11.87313 -11.80591 -11.71067 -11.25975 -11.23854 -10.97549 -10.88387 -10.32586 -10.26313 -10.10002 -9.85595 -9.55574 -9.33559 -9.14837 -8.78101 -7.71537 -7.19825 -6.46679 -4.48611 2.76647 2.95215 3.27298 3.43429 3.61556 3.62514 3.97122 4.09289 4.56399 4.61808 4.67273 4.81582 4.91056 5.13261 5.17285 5.32140 5.33071 5.40132 5.48826 5.55828 5.58967 5.61645 5.72559 5.83834 5.92374 5.95087 6.07011 6.08222 6.14272 6.27418 6.40215 6.62522 6.82560 6.88303 7.15065 7.17759 7.50819 7.62062 7.69118 7.82803 7.90302 8.28949 8.43247 8.54299 8.76955 8.89117 10.05884 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.003899 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.851701 B = 7179.203487 C = 7251.021943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.116 3.884 3 C -0.182 4.182 4 C -0.149 4.149 5 C 0.159 3.841 6 H 0.079 0.921 7 N -0.755 5.755 8 C 0.239 3.761 9 C -0.308 4.308 10 C -0.045 4.045 11 C -0.277 4.277 12 C 0.131 3.869 13 C -0.522 4.522 14 H 0.073 0.927 15 C 0.046 3.954 16 N -0.817 5.817 17 Si 1.077 2.923 18 H -0.278 1.278 19 H -0.262 1.262 20 H -0.293 1.293 21 C -0.287 4.287 22 C -0.171 4.171 23 C 0.061 3.939 24 O -0.376 6.376 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.389 0.611 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.285 0.715 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 6.248 -12.289 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 C -0.239 4.239 4 C -0.187 4.187 5 C 0.053 3.947 6 H 0.097 0.903 7 N -0.386 5.386 8 C 0.140 3.860 9 C -0.330 4.330 10 C -0.064 4.064 11 C -0.297 4.297 12 C 0.127 3.873 13 C -0.551 4.551 14 H 0.091 0.909 15 C -0.173 4.173 16 N -0.440 5.440 17 Si 0.903 3.097 18 H -0.205 1.205 19 H -0.187 1.187 20 H -0.221 1.221 21 C -0.311 4.311 22 C -0.211 4.211 23 C -0.016 4.016 24 O -0.296 6.296 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.546 7.383 -11.859 18.777 hybrid contribution -0.827 -1.697 -0.262 1.906 sum -13.373 5.686 -12.121 18.923 Atomic orbital electron populations 1.21752 0.92425 1.02796 1.02416 1.21411 0.94678 0.91181 0.85137 1.22486 1.02358 0.96334 1.02743 1.22474 0.95944 1.01881 0.98449 1.20720 0.92241 0.96018 0.85756 0.90326 1.44553 1.14554 1.45429 1.34051 1.17550 0.83349 0.93285 0.91851 1.19881 0.96933 1.08698 1.07506 1.20367 0.94277 0.96580 0.95180 1.20886 1.00209 1.06616 1.01981 1.17436 0.89489 0.89085 0.91275 1.20581 1.20634 1.03786 1.10061 0.90916 1.27283 0.89645 1.08384 0.92035 1.70544 1.29340 1.08332 1.35788 0.83537 0.78374 0.72358 0.75427 1.20472 1.18671 1.22051 1.20392 0.97615 1.09629 1.03466 1.22743 1.02259 1.00739 0.95311 1.22580 0.80849 0.99767 0.98416 1.87938 1.21228 1.77401 1.42989 0.91108 0.91829 0.91855 0.91608 0.91832 0.91348 0.90917 0.90489 0.77782 0.89126 0.89000 0.88387 0.90349 0.89000 0.90142 0.91257 0.88996 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 2 C 0.12 1.22 1.11 -90.57 -0.10 1.12 16 3 C -0.18 -1.77 7.93 37.16 0.29 -1.47 16 4 C -0.15 -1.72 4.40 -26.59 -0.12 -1.84 16 5 C 0.16 2.21 1.91 -67.75 -0.13 2.08 16 6 H 0.08 1.16 4.96 -51.93 -0.26 0.90 16 7 N -0.75 -12.75 5.25 -52.04 -0.27 -13.02 16 8 C 0.24 5.07 6.63 -83.86 -0.56 4.52 16 9 C -0.31 -6.47 8.90 -39.09 -0.35 -6.82 16 10 C -0.05 -1.00 10.02 -39.69 -0.40 -1.40 16 11 C -0.28 -6.90 7.35 -38.83 -0.29 -7.18 16 12 C 0.13 3.45 5.15 -106.85 -0.55 2.90 16 13 C -0.52 -14.50 9.40 -37.74 -0.35 -14.86 16 14 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16 15 C 0.05 1.24 5.34 -17.34 -0.09 1.15 16 16 N -0.82 -22.48 13.65 55.55 0.76 -21.72 16 17 Si 1.08 25.08 24.99 -169.99 -4.25 20.83 16 18 H -0.28 -6.19 6.68 56.52 0.38 -5.81 16 19 H -0.26 -6.11 7.00 56.52 0.40 -5.72 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.29 -6.94 9.63 -38.67 -0.37 -7.31 16 22 C -0.17 -2.26 5.67 -26.59 -0.15 -2.41 16 23 C 0.06 0.69 6.51 37.21 0.24 0.93 16 24 O -0.38 -4.57 10.24 -35.23 -0.36 -4.93 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.68 4.98 -51.93 -0.26 0.43 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 6.10 8.61 -40.82 -0.35 5.75 16 34 H 0.09 1.69 6.05 -52.49 -0.32 1.37 16 35 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.10 2.43 4.69 -52.48 -0.25 2.19 16 37 H 0.29 7.63 8.73 -40.82 -0.36 7.27 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -28.66 323.23 -8.26 -36.92 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.42 Total: 8.49 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -2.59 Total: -31.45 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.48 Total: -34.74 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.36 Total: -4.93 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.25 Total: 20.83 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.66 -8.26 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.750 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds