Wall clock time and date at job start Mon Mar 30 2020 01:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.48730 * 2 1 4 4 C 1.53089 * 109.48142 * 120.02559 * 2 1 3 5 5 C 1.53177 * 109.16302 * 177.59275 * 4 2 1 6 6 H 1.08999 * 109.54332 * 62.97709 * 5 4 2 7 7 N 1.46501 * 109.54172 * 183.15412 * 5 4 2 8 8 C 1.39677 * 119.99815 * 204.82359 * 7 5 4 9 9 C 1.39338 * 119.95548 * 0.02562 * 8 7 5 10 10 C 1.38470 * 120.42722 * 180.02562 * 9 8 7 11 11 C 1.37696 * 120.32420 * 359.71818 * 10 9 8 12 12 C 1.40747 * 119.89205 * 0.53942 * 11 10 9 13 13 C 1.41410 * 120.20461 * 179.73722 * 12 11 10 14 14 H 1.08000 * 119.99884 * 206.27028 * 13 12 11 15 15 C 1.39928 * 119.99926 * 26.27798 * 13 12 11 16 16 N 1.30840 * 119.99343 * 203.66151 * 15 13 12 17 17 Si 1.86795 * 120.00223 * 23.66205 * 15 13 12 18 18 H 1.48499 * 109.46871 * 263.27849 * 17 15 13 19 19 H 1.48494 * 109.47296 * 23.28125 * 17 15 13 20 20 H 1.48499 * 109.46874 * 143.28083 * 17 15 13 21 21 C 1.38285 * 119.95063 * 180.02562 * 8 7 5 22 22 C 1.53178 * 109.10837 * 303.06610 * 5 4 2 23 23 C 1.53097 * 109.15723 * 56.84909 * 22 5 4 24 24 O 1.42899 * 109.47890 * 239.97310 * 2 1 3 25 25 H 1.09000 * 109.46896 * 299.97448 * 1 2 3 26 26 H 1.09007 * 109.46865 * 59.96803 * 1 2 3 27 27 H 1.08996 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46922 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47080 * 300.02792 * 3 2 1 30 30 H 1.08999 * 109.47634 * 60.02832 * 3 2 1 31 31 H 1.09000 * 109.52169 * 57.68941 * 4 2 1 32 32 H 1.09003 * 109.52404 * 297.50124 * 4 2 1 33 33 H 0.96999 * 120.00339 * 24.82221 * 7 5 4 34 34 H 1.07998 * 119.78668 * 359.97438 * 9 8 7 35 35 H 1.08003 * 119.84170 * 180.02562 * 10 9 8 36 36 H 1.08004 * 120.05441 * 180.27706 * 11 10 9 37 37 H 0.96995 * 119.99774 * 353.17024 * 16 15 13 38 38 H 1.07996 * 120.16177 * 0.02562 * 21 8 7 39 39 H 1.09005 * 109.52078 * 176.84222 * 22 5 4 40 40 H 1.09001 * 109.52200 * 297.02627 * 22 5 4 41 41 H 1.09005 * 109.48329 * 182.49519 * 23 22 5 42 42 H 1.08995 * 109.41183 * 62.50560 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9690 0.2436 1.2424 7 7 4.0658 -1.5258 2.3660 8 6 5.3543 -1.2933 2.8524 9 6 6.1682 -0.3426 2.2398 10 6 7.4474 -0.1046 2.7136 11 6 7.9273 -0.8014 3.7999 12 6 7.1187 -1.7687 4.4257 13 6 7.6069 -2.4921 5.5384 14 1 7.2173 -3.4756 5.7562 15 6 8.5946 -1.9337 6.3573 16 7 9.3692 -2.7105 7.0704 17 14 8.8072 -0.0794 6.4324 18 1 9.8934 0.3321 5.5071 19 1 7.5389 0.5809 6.0317 20 1 9.1585 0.3228 7.8180 21 6 5.8204 -2.0069 3.9413 22 6 4.0195 -1.4587 -0.0809 23 6 3.4308 -0.7092 -1.2790 24 8 2.0065 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5144 -0.8898 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6768 1.9565 -0.8898 30 1 1.6777 1.9563 0.8902 31 1 1.6444 -1.7374 1.2710 32 1 1.7148 -0.1842 2.1399 33 1 3.4985 -2.1872 2.7923 34 1 5.7993 0.2116 1.3895 35 1 8.0700 0.6348 2.2318 36 1 8.9240 -0.6091 4.1686 37 1 9.1963 -3.6641 7.1091 38 1 5.1907 -2.7443 4.4168 39 1 5.1078 -1.4470 -0.1412 40 1 3.6645 -2.4893 -0.0872 41 1 3.7100 -1.2202 -2.2005 42 1 3.8192 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313441050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:44 Heat of formation + Delta-G solvation = -59.815107 kcal Electronic energy + Delta-G solvation = -21463.042338 eV Core-core repulsion = 18405.974791 eV Total energy + Delta-G solvation = -3057.067546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20961 -39.67326 -37.02200 -35.34104 -34.54849 -32.94346 -31.92604 -29.88373 -28.32749 -28.13204 -26.75267 -24.79559 -23.15415 -22.79695 -21.63525 -20.21987 -19.90790 -17.86612 -17.32833 -17.16087 -16.73335 -16.19360 -15.79346 -15.69195 -15.32211 -15.23479 -14.88045 -14.32891 -14.08800 -13.88343 -13.78744 -13.57961 -13.27509 -12.96869 -12.84829 -12.82205 -12.61680 -12.48984 -12.22016 -12.09489 -11.99576 -11.88665 -11.57764 -11.24620 -11.12713 -10.91241 -10.51422 -10.48288 -9.66313 -9.23595 -8.11484 -6.57051 0.90042 1.10795 1.39984 1.59794 1.80680 2.21567 2.57876 2.67371 2.83946 3.58819 3.64878 3.84064 3.86353 4.05741 4.10737 4.26959 4.33579 4.38526 4.43748 4.60850 4.64656 4.71233 4.77525 4.80063 4.85922 4.89146 4.97766 5.01547 5.03861 5.08229 5.10063 5.21366 5.31059 5.36940 5.40767 5.49335 5.77870 5.82378 5.95348 6.02243 6.32533 6.41768 6.57274 6.85357 6.87680 7.05126 7.98724 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.003899 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.851701 B = 7179.203487 C = 7251.021943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.113 3.887 3 C -0.181 4.181 4 C -0.143 4.143 5 C 0.155 3.845 6 H 0.079 0.921 7 N -0.746 5.746 8 C 0.248 3.752 9 C -0.294 4.294 10 C -0.043 4.043 11 C -0.298 4.298 12 C 0.111 3.889 13 C -0.559 4.559 14 H 0.040 0.960 15 C 0.014 3.986 16 N -0.843 5.843 17 Si 1.111 2.889 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.281 1.281 21 C -0.308 4.308 22 C -0.167 4.167 23 C 0.064 3.936 24 O -0.388 6.388 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.394 0.606 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.276 0.724 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 8.884 -14.743 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 C -0.238 4.238 4 C -0.181 4.181 5 C 0.050 3.950 6 H 0.097 0.903 7 N -0.376 5.376 8 C 0.145 3.855 9 C -0.316 4.316 10 C -0.062 4.062 11 C -0.318 4.318 12 C 0.107 3.893 13 C -0.589 4.589 14 H 0.058 0.942 15 C -0.199 4.199 16 N -0.467 5.467 17 Si 0.932 3.068 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.207 1.207 21 C -0.333 4.333 22 C -0.206 4.206 23 C -0.013 4.013 24 O -0.308 6.308 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.109 10.000 -14.342 22.467 hybrid contribution -0.581 -2.522 0.274 2.603 sum -14.690 7.478 -14.068 21.671 Atomic orbital electron populations 1.21772 0.91012 1.02979 1.03501 1.21562 0.95776 0.91394 0.83968 1.22483 1.01895 0.95747 1.03697 1.22441 0.93906 1.02243 0.99558 1.20950 0.93940 0.95418 0.84698 0.90325 1.44692 1.12988 1.45385 1.34514 1.17607 0.85008 0.92199 0.90640 1.20319 0.96292 1.07534 1.07455 1.20789 0.95061 0.96399 0.93947 1.20975 1.00224 1.07260 1.03365 1.17618 0.90635 0.89864 0.91138 1.20572 1.22713 1.03322 1.12285 0.94176 1.28358 0.89080 1.11345 0.91145 1.70616 1.30530 1.07967 1.37628 0.83122 0.78763 0.68486 0.76469 1.18440 1.18832 1.20740 1.20492 0.97317 1.10479 1.04970 1.22672 1.01500 1.00575 0.95848 1.22612 0.80556 1.00232 0.97907 1.87944 1.21492 1.77741 1.43582 0.89630 0.91194 0.92165 0.92257 0.90957 0.90434 0.91057 0.89826 0.77142 0.85830 0.85298 0.88689 0.91326 0.89663 0.91351 0.92091 0.87653 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 2 C 0.11 2.01 1.11 -10.76 -0.01 2.00 16 3 C -0.18 -2.84 7.93 71.98 0.57 -2.27 16 4 C -0.14 -2.89 4.40 30.68 0.13 -2.75 16 5 C 0.16 3.85 1.91 45.11 0.09 3.94 16 6 H 0.08 2.00 4.96 -2.39 -0.01 1.99 16 7 N -0.75 -23.61 5.25 -318.55 -1.67 -25.29 16 8 C 0.25 10.07 6.63 38.17 0.25 10.33 16 9 C -0.29 -11.33 8.90 22.59 0.20 -11.13 16 10 C -0.04 -1.79 10.02 22.20 0.22 -1.57 16 11 C -0.30 -14.58 7.35 22.76 0.17 -14.41 16 12 C 0.11 5.94 5.15 -21.31 -0.11 5.83 16 13 C -0.56 -32.77 9.40 23.46 0.22 -32.55 16 14 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 15 C 0.01 0.80 5.34 85.25 0.46 1.25 16 16 N -0.84 -48.43 13.65 21.82 0.30 -48.13 16 17 Si 1.11 50.85 24.99 68.60 1.71 52.56 16 18 H -0.26 -10.96 6.68 99.48 0.66 -10.29 16 19 H -0.26 -11.99 7.00 99.48 0.70 -11.29 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 C -0.31 -15.04 9.63 22.86 0.22 -14.82 16 22 C -0.17 -3.95 5.67 30.69 0.17 -3.78 16 23 C 0.06 1.24 6.51 72.01 0.47 1.70 16 24 O -0.39 -8.21 10.24 -148.98 -1.53 -9.74 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.01 4.98 -2.39 -0.01 0.99 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.39 11.78 8.61 -92.71 -0.80 10.98 16 34 H 0.12 3.98 6.05 -2.91 -0.02 3.96 16 35 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.10 4.65 4.69 -2.91 -0.01 4.63 16 37 H 0.28 15.75 8.73 -92.71 -0.81 14.94 16 38 H 0.09 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.07 1.80 7.71 -2.38 -0.02 1.78 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.06 1.12 6.34 -2.39 -0.02 1.10 16 Total: -1.00 -63.37 323.23 2.63 -60.74 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.13 Total: 29.38 kcal Atomic # 6 Polarization: -63.21 SS G_CDS: 3.69 Total: -59.52 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.38 Total: -73.42 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.53 Total: -9.74 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.71 Total: 52.56 kcal Total: -63.37 2.63 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.921 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds