Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.48975 * 2 1 4 4 C 1.53089 * 109.48387 * 120.02829 * 2 1 3 5 5 C 1.53185 * 109.15999 * 62.37255 * 4 2 1 6 6 H 1.09003 * 109.54492 * 297.02303 * 5 4 2 7 7 N 1.46501 * 109.54178 * 176.85000 * 5 4 2 8 8 C 1.39681 * 119.99890 * 155.00257 * 7 5 4 9 9 C 1.39345 * 119.95459 * 0.24999 * 8 7 5 10 10 C 1.38473 * 120.42281 * 180.30115 * 9 8 7 11 11 C 1.37692 * 120.32756 * 359.72694 * 10 9 8 12 12 C 1.40742 * 119.89325 * 359.97438 * 11 10 9 13 13 C 1.41401 * 120.20777 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00258 * 24.45628 * 13 12 11 15 15 C 1.39936 * 120.00030 * 204.44828 * 13 12 11 16 16 N 1.30830 * 119.99765 * 17.88066 * 15 13 12 17 17 Si 1.86799 * 120.00189 * 197.86943 * 15 13 12 18 18 H 1.48500 * 109.46878 * 60.00613 * 17 15 13 19 19 H 1.48498 * 109.47330 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47202 * 300.00785 * 17 15 13 21 21 C 1.38278 * 119.95275 * 179.97438 * 8 7 5 22 22 C 1.53179 * 109.03463 * 56.98190 * 5 4 2 23 23 C 1.53092 * 109.16261 * 303.01705 * 22 5 4 24 24 O 1.42902 * 109.48204 * 239.97385 * 2 1 3 25 25 H 1.08999 * 109.46927 * 299.97196 * 1 2 3 26 26 H 1.08996 * 109.47395 * 59.96907 * 1 2 3 27 27 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46866 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47028 * 300.02960 * 3 2 1 30 30 H 1.09002 * 109.46825 * 60.02954 * 3 2 1 31 31 H 1.08997 * 109.52492 * 302.47544 * 4 2 1 32 32 H 1.08996 * 109.57827 * 182.30669 * 4 2 1 33 33 H 0.97003 * 119.99981 * 334.99770 * 7 5 4 34 34 H 1.07997 * 119.78645 * 0.05160 * 9 8 7 35 35 H 1.07998 * 119.83585 * 179.74189 * 10 9 8 36 36 H 1.07997 * 120.05289 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00010 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.15863 * 359.97438 * 21 8 7 39 39 H 1.09000 * 109.51815 * 62.92617 * 22 5 4 40 40 H 1.08999 * 109.51997 * 183.11525 * 22 5 4 41 41 H 1.08990 * 109.48265 * 297.62676 * 23 22 5 42 42 H 1.09003 * 109.47876 * 177.58839 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5757 -2.1814 1.2121 6 1 0.4867 -2.2180 1.2424 7 7 2.1225 -2.8996 2.3659 8 6 1.4714 -4.0347 2.8546 9 6 0.3048 -4.4860 2.2407 10 6 -0.3520 -5.6065 2.7209 11 6 0.1443 -6.2907 3.8078 12 6 1.3251 -5.8504 4.4345 13 6 1.8403 -6.5477 5.5515 14 1 1.6003 -7.5910 5.6946 15 6 2.6614 -5.8862 6.4715 16 7 2.6765 -4.5786 6.5126 17 14 3.7355 -6.8700 7.6410 18 1 4.6775 -7.7106 6.8592 19 1 4.5034 -5.9407 8.5081 20 1 2.8792 -7.7408 8.4856 21 6 1.9886 -4.7122 3.9434 22 6 2.0765 -2.8322 -0.0810 23 6 1.5645 -2.0284 -1.2791 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5143 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1305 1.4420 -0.0005 29 1 1.6769 1.9565 -0.8897 30 1 1.6777 1.9562 0.8903 31 1 1.6421 -0.2358 2.1398 32 1 3.1298 -0.6875 1.2720 33 1 2.9367 -2.5870 2.7905 34 1 -0.0919 -3.9561 1.3873 35 1 -1.2578 -5.9456 2.2403 36 1 -0.3713 -7.1643 4.1784 37 1 3.2453 -4.1200 7.1506 38 1 2.8955 -4.3662 4.4171 39 1 3.1664 -2.8399 -0.0864 40 1 1.7036 -3.8546 -0.1422 41 1 0.4750 -2.0549 -1.2958 42 1 1.9530 -2.4621 -2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313441052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = -38.446921 kcal Electronic energy + Delta-G solvation = -21540.321017 eV Core-core repulsion = 18484.180065 eV Total energy + Delta-G solvation = -3056.140952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08712 -37.71912 -35.29328 -33.64968 -33.36478 -31.40917 -29.44141 -28.45801 -27.42034 -26.65213 -25.22078 -23.62500 -21.77027 -20.94872 -19.74870 -19.13096 -17.23594 -16.37487 -16.06197 -15.65844 -15.02186 -14.79866 -14.56903 -14.31680 -13.99296 -13.63842 -13.06825 -12.81377 -12.57538 -12.46173 -12.22829 -12.17456 -11.93253 -11.77788 -11.66054 -11.34072 -11.13350 -11.10650 -11.03865 -10.74956 -10.51885 -10.39670 -10.03238 -9.70486 -9.48777 -9.33412 -9.21648 -8.75096 -7.30349 -6.72278 -6.15556 -4.30362 2.89206 3.09369 3.12834 3.23999 3.35158 3.72507 3.98304 4.20108 4.69303 4.72861 4.78770 4.94324 5.03952 5.27906 5.30367 5.44306 5.46033 5.50264 5.59534 5.68475 5.74604 5.83363 5.84882 5.96810 6.03585 6.07694 6.20302 6.27189 6.29403 6.44913 6.62279 6.89898 7.12165 7.14866 7.27875 7.39484 7.45328 7.82386 7.96850 8.12210 8.18469 8.50295 8.72122 8.85167 9.02361 9.13215 10.26526 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.004196 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.336565 B = 6670.906358 C = 7224.325777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.116 3.884 3 C -0.136 4.136 4 C -0.149 4.149 5 C 0.162 3.838 6 H 0.076 0.924 7 N -0.754 5.754 8 C 0.217 3.783 9 C -0.301 4.301 10 C -0.066 4.066 11 C -0.258 4.258 12 C 0.140 3.860 13 C -0.466 4.466 14 H 0.076 0.924 15 C 0.079 3.921 16 N -0.793 5.793 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.232 4.232 22 C -0.171 4.171 23 C 0.061 3.939 24 O -0.377 6.377 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.389 0.611 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.278 0.722 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 9.246 -10.243 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.055 3.945 6 H 0.094 0.906 7 N -0.386 5.386 8 C 0.119 3.881 9 C -0.324 4.324 10 C -0.085 4.085 11 C -0.279 4.279 12 C 0.137 3.863 13 C -0.496 4.496 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.418 5.418 17 Si 0.729 3.271 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.256 4.256 22 C -0.210 4.210 23 C -0.016 4.016 24 O -0.296 6.296 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.222 0.778 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.312 9.577 -10.361 14.113 hybrid contribution 0.602 -0.484 0.997 1.261 sum 0.290 9.093 -9.364 13.056 Atomic orbital electron populations 1.22478 0.95740 1.03015 1.02634 1.21411 0.93112 0.92655 0.85214 1.21749 1.01892 0.93386 1.02331 1.22472 1.01978 0.96011 0.98280 1.20663 0.98384 0.89608 0.85873 0.90575 1.44484 1.29965 1.30198 1.33977 1.17644 0.91573 0.86135 0.92766 1.19882 1.01475 1.04154 1.06846 1.20280 0.97200 0.95043 0.95957 1.20854 1.00090 1.04468 1.02451 1.17310 0.88619 0.90212 0.90199 1.19529 1.26058 0.97917 1.06075 0.90634 1.25869 0.95671 0.94764 0.97565 1.69858 1.31804 1.08614 1.31556 0.86444 0.80431 0.80378 0.79869 1.18912 1.20472 1.19082 1.20730 1.03796 1.01938 0.99125 1.22751 1.02093 1.00782 0.95408 1.22579 0.98715 0.81860 0.98438 1.87925 1.73837 1.24849 1.43038 0.91376 0.91939 0.91601 0.91873 0.91919 0.91127 0.90531 0.90977 0.77804 0.89709 0.89714 0.89442 0.91152 0.86574 0.91307 0.90256 0.92969 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 7.93 37.16 0.29 -1.67 16 2 C 0.12 1.36 1.11 -90.57 -0.10 1.26 16 3 C -0.14 -1.33 8.85 37.16 0.33 -1.01 16 4 C -0.15 -1.96 4.40 -26.59 -0.12 -2.07 16 5 C 0.16 2.51 1.91 -67.74 -0.13 2.38 16 6 H 0.08 1.25 4.96 -51.93 -0.26 1.00 16 7 N -0.75 -14.31 5.25 -52.03 -0.27 -14.59 16 8 C 0.22 5.03 6.63 -83.86 -0.56 4.48 16 9 C -0.30 -6.78 8.92 -39.08 -0.35 -7.13 16 10 C -0.07 -1.52 10.01 -39.69 -0.40 -1.92 16 11 C -0.26 -6.55 9.79 -38.84 -0.38 -6.93 16 12 C 0.14 3.81 5.57 -106.85 -0.60 3.22 16 13 C -0.47 -12.65 9.05 -37.74 -0.34 -12.99 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 16 N -0.79 -20.75 10.95 55.55 0.61 -20.15 16 17 Si 0.90 18.97 29.60 -169.99 -5.03 13.94 16 18 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.23 -6.07 8.53 -38.67 -0.33 -6.40 16 22 C -0.17 -2.47 5.67 -26.59 -0.15 -2.62 16 23 C 0.06 0.75 6.52 37.21 0.24 0.99 16 24 O -0.38 -4.96 10.24 -35.23 -0.36 -5.32 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.76 4.98 -51.93 -0.26 0.50 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.39 7.13 8.61 -40.82 -0.35 6.78 16 34 H 0.08 1.72 6.05 -52.49 -0.32 1.40 16 35 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.25 7.72 -51.93 -0.40 0.85 16 41 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -28.28 327.81 -9.23 -37.51 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -6.44 Total: 12.16 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.67 Total: -28.49 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.34 Total: -34.73 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.36 Total: -5.32 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.28 -9.23 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.938 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds