Wall clock time and date at job start Mon Mar 30 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.48975 * 2 1 4 4 C 1.53089 * 109.48387 * 120.02829 * 2 1 3 5 5 C 1.53185 * 109.15999 * 62.37255 * 4 2 1 6 6 H 1.09003 * 109.54492 * 297.02303 * 5 4 2 7 7 N 1.46501 * 109.54178 * 176.85000 * 5 4 2 8 8 C 1.39681 * 119.99890 * 155.00257 * 7 5 4 9 9 C 1.39345 * 119.95459 * 0.24999 * 8 7 5 10 10 C 1.38473 * 120.42281 * 180.30115 * 9 8 7 11 11 C 1.37692 * 120.32756 * 359.72694 * 10 9 8 12 12 C 1.40742 * 119.89325 * 359.97438 * 11 10 9 13 13 C 1.41401 * 120.20777 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00258 * 24.45628 * 13 12 11 15 15 C 1.39936 * 120.00030 * 204.44828 * 13 12 11 16 16 N 1.30830 * 119.99765 * 17.88066 * 15 13 12 17 17 Si 1.86799 * 120.00189 * 197.86943 * 15 13 12 18 18 H 1.48500 * 109.46878 * 60.00613 * 17 15 13 19 19 H 1.48498 * 109.47330 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47202 * 300.00785 * 17 15 13 21 21 C 1.38278 * 119.95275 * 179.97438 * 8 7 5 22 22 C 1.53179 * 109.03463 * 56.98190 * 5 4 2 23 23 C 1.53092 * 109.16261 * 303.01705 * 22 5 4 24 24 O 1.42902 * 109.48204 * 239.97385 * 2 1 3 25 25 H 1.08999 * 109.46927 * 299.97196 * 1 2 3 26 26 H 1.08996 * 109.47395 * 59.96907 * 1 2 3 27 27 H 1.08998 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46866 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47028 * 300.02960 * 3 2 1 30 30 H 1.09002 * 109.46825 * 60.02954 * 3 2 1 31 31 H 1.08997 * 109.52492 * 302.47544 * 4 2 1 32 32 H 1.08996 * 109.57827 * 182.30669 * 4 2 1 33 33 H 0.97003 * 119.99981 * 334.99770 * 7 5 4 34 34 H 1.07997 * 119.78645 * 0.05160 * 9 8 7 35 35 H 1.07998 * 119.83585 * 179.74189 * 10 9 8 36 36 H 1.07997 * 120.05289 * 180.02562 * 11 10 9 37 37 H 0.96998 * 120.00010 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.15863 * 359.97438 * 21 8 7 39 39 H 1.09000 * 109.51815 * 62.92617 * 22 5 4 40 40 H 1.08999 * 109.51997 * 183.11525 * 22 5 4 41 41 H 1.08990 * 109.48265 * 297.62676 * 23 22 5 42 42 H 1.09003 * 109.47876 * 177.58839 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5757 -2.1814 1.2121 6 1 0.4867 -2.2180 1.2424 7 7 2.1225 -2.8996 2.3659 8 6 1.4714 -4.0347 2.8546 9 6 0.3048 -4.4860 2.2407 10 6 -0.3520 -5.6065 2.7209 11 6 0.1443 -6.2907 3.8078 12 6 1.3251 -5.8504 4.4345 13 6 1.8403 -6.5477 5.5515 14 1 1.6003 -7.5910 5.6946 15 6 2.6614 -5.8862 6.4715 16 7 2.6765 -4.5786 6.5126 17 14 3.7355 -6.8700 7.6410 18 1 4.6775 -7.7106 6.8592 19 1 4.5034 -5.9407 8.5081 20 1 2.8792 -7.7408 8.4856 21 6 1.9886 -4.7122 3.9434 22 6 2.0765 -2.8322 -0.0810 23 6 1.5645 -2.0284 -1.2791 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5143 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1305 1.4420 -0.0005 29 1 1.6769 1.9565 -0.8897 30 1 1.6777 1.9562 0.8903 31 1 1.6421 -0.2358 2.1398 32 1 3.1298 -0.6875 1.2720 33 1 2.9367 -2.5870 2.7905 34 1 -0.0919 -3.9561 1.3873 35 1 -1.2578 -5.9456 2.2403 36 1 -0.3713 -7.1643 4.1784 37 1 3.2453 -4.1200 7.1506 38 1 2.8955 -4.3662 4.4171 39 1 3.1664 -2.8399 -0.0864 40 1 1.7036 -3.8546 -0.1422 41 1 0.4750 -2.0549 -1.2958 42 1 1.9530 -2.4621 -2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313441052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:48 Heat of formation + Delta-G solvation = -53.857607 kcal Electronic energy + Delta-G solvation = -21540.989274 eV Core-core repulsion = 18484.180065 eV Total energy + Delta-G solvation = -3056.809210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17437 -39.46318 -36.83812 -35.25251 -34.54370 -32.85972 -31.36262 -29.75379 -28.28584 -28.04718 -27.14024 -24.80501 -23.12399 -22.68288 -21.46111 -20.20583 -19.08752 -17.81105 -17.12712 -17.06626 -16.63770 -16.34610 -15.91695 -15.65549 -15.24866 -14.95829 -14.50627 -14.28977 -14.03613 -13.92957 -13.64031 -13.29000 -13.13763 -12.96389 -12.79061 -12.77030 -12.64252 -12.60076 -12.24738 -12.11540 -12.08274 -11.84711 -11.60713 -11.30326 -11.10590 -10.98135 -10.49231 -10.45647 -9.25762 -8.62944 -7.91940 -6.32725 1.08837 1.33183 1.37734 1.48782 1.59045 2.22295 2.68025 2.80812 2.86492 3.66379 3.79609 3.85247 3.93229 4.06021 4.13613 4.27990 4.36884 4.43972 4.52052 4.64733 4.71858 4.77382 4.79954 4.86838 4.88870 4.98668 5.01735 5.04836 5.09104 5.17615 5.20739 5.30386 5.32437 5.40013 5.46277 5.60027 5.95431 6.10317 6.21038 6.26545 6.32242 6.57771 6.93658 7.03924 7.05766 7.24060 8.37463 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.004196 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.336565 B = 6670.906358 C = 7224.325777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.114 3.886 3 C -0.135 4.135 4 C -0.143 4.143 5 C 0.158 3.842 6 H 0.072 0.928 7 N -0.750 5.750 8 C 0.223 3.777 9 C -0.301 4.301 10 C -0.062 4.062 11 C -0.286 4.286 12 C 0.109 3.891 13 C -0.506 4.506 14 H 0.071 0.929 15 C 0.039 3.961 16 N -0.822 5.822 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.261 4.261 22 C -0.165 4.165 23 C 0.065 3.935 24 O -0.386 6.386 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.390 0.610 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.285 0.715 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 10.391 -11.294 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.074 3.926 3 C -0.192 4.192 4 C -0.181 4.181 5 C 0.053 3.947 6 H 0.090 0.910 7 N -0.380 5.380 8 C 0.122 3.878 9 C -0.323 4.323 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.107 3.893 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.448 5.448 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.285 4.285 22 C -0.204 4.204 23 C -0.012 4.012 24 O -0.306 6.306 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.223 0.777 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.504 10.756 -11.446 15.714 hybrid contribution 0.611 -0.754 1.219 1.558 sum 0.107 10.002 -10.226 14.305 Atomic orbital electron populations 1.22471 0.94855 1.02753 1.03665 1.21550 0.93830 0.93322 0.83891 1.21766 1.01786 0.92117 1.03504 1.22439 1.01878 0.94358 0.99463 1.20876 0.98038 0.90863 0.84936 0.90991 1.44622 1.29653 1.29071 1.34645 1.17744 0.91653 0.86670 0.91715 1.20208 1.00905 1.03972 1.07238 1.20650 0.97982 0.94513 0.94935 1.21015 1.00279 1.05454 1.03914 1.17699 0.89635 0.91081 0.90932 1.19796 1.28348 0.98089 1.07378 0.91035 1.26699 0.96262 0.95738 0.98926 1.69915 1.32385 1.10062 1.32445 0.85319 0.78358 0.78841 0.77556 1.18681 1.19129 1.18416 1.20665 1.03992 1.03001 1.00882 1.22662 1.01549 1.00366 0.95863 1.22613 0.99362 0.81338 0.97897 1.87931 1.74197 1.25013 1.43462 0.90632 0.90702 0.92467 0.92116 0.90971 0.89772 0.90344 0.91175 0.77666 0.86992 0.86384 0.89267 0.90451 0.88360 0.92094 0.91570 0.91899 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 7.93 71.98 0.57 -2.84 16 2 C 0.11 2.39 1.11 -10.76 -0.01 2.38 16 3 C -0.13 -2.27 8.85 71.98 0.64 -1.64 16 4 C -0.14 -3.52 4.40 30.69 0.13 -3.39 16 5 C 0.16 4.70 1.91 45.11 0.09 4.79 16 6 H 0.07 2.23 4.96 -2.39 -0.01 2.22 16 7 N -0.75 -28.27 5.25 -318.53 -1.67 -29.94 16 8 C 0.22 10.39 6.63 38.17 0.25 10.64 16 9 C -0.30 -13.22 8.92 22.59 0.20 -13.02 16 10 C -0.06 -2.82 10.01 22.20 0.22 -2.60 16 11 C -0.29 -14.81 9.79 22.75 0.22 -14.58 16 12 C 0.11 6.20 5.57 -21.31 -0.12 6.08 16 13 C -0.51 -28.58 9.05 23.46 0.21 -28.37 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.04 2.01 5.14 85.25 0.44 2.45 16 16 N -0.82 -44.19 10.95 21.82 0.24 -43.95 16 17 Si 0.98 39.43 29.60 68.60 2.03 41.47 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 21 C -0.26 -14.14 8.53 22.86 0.20 -13.94 16 22 C -0.16 -4.54 5.67 30.68 0.17 -4.36 16 23 C 0.06 1.44 6.52 72.01 0.47 1.91 16 24 O -0.39 -9.20 10.24 -148.98 -1.53 -10.73 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.18 4.98 -2.39 -0.01 1.17 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.39 14.43 8.61 -92.71 -0.80 13.63 16 34 H 0.11 4.27 6.05 -2.91 -0.02 4.25 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 38 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.99 7.72 -2.39 -0.02 1.98 16 41 H 0.06 1.28 6.34 -2.39 -0.02 1.27 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -62.04 327.81 2.97 -59.07 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: 0.22 Total: 40.57 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 3.69 Total: -56.48 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.43 Total: -73.90 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.53 Total: -10.73 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.47 kcal Total: -62.04 2.97 -59.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.209 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds