Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00394 * 2 1 4 4 C 1.52999 * 109.46844 * 95.00090 * 3 2 1 5 5 C 1.50706 * 119.99934 * 180.02562 * 2 1 3 6 6 N 1.46901 * 109.46701 * 94.99749 * 5 2 1 7 7 C 1.46903 * 110.99623 * 180.02562 * 6 5 2 8 8 H 1.08997 * 109.47148 * 34.99954 * 7 6 5 9 9 C 1.53002 * 109.47101 * 274.99787 * 7 6 5 10 10 C 1.50704 * 109.47151 * 155.00233 * 7 6 5 11 11 C 1.38299 * 119.93072 * 39.72221 * 10 7 6 12 12 C 1.38099 * 120.06809 * 179.72372 * 11 10 7 13 13 C 1.38876 * 119.92991 * 0.55702 * 12 11 10 14 14 O 1.35750 * 120.06959 * 179.74905 * 13 12 11 15 15 C 1.34827 * 117.00104 * 174.43819 * 14 13 12 16 16 H 1.07994 * 120.00121 * 5.05448 * 15 14 13 17 17 C 1.38654 * 119.99939 * 185.05211 * 15 14 13 18 18 N 1.31560 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47656 * 90.00041 * 19 17 15 21 21 H 1.48507 * 109.47218 * 210.00281 * 19 17 15 22 22 H 1.48508 * 109.47250 * 329.99484 * 19 17 15 23 23 C 1.38875 * 119.86408 * 359.71864 * 13 12 11 24 24 C 1.38105 * 119.92901 * 0.02562 * 23 13 12 25 25 H 1.08003 * 120.00082 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.00455 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47364 * 215.00196 * 3 2 1 28 28 H 1.08996 * 109.46777 * 335.00183 * 3 2 1 29 29 H 1.08996 * 109.47357 * 60.00448 * 4 3 2 30 30 H 1.09003 * 109.47023 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47227 * 300.00191 * 4 3 2 32 32 H 1.09002 * 109.46843 * 335.00259 * 5 2 1 33 33 H 1.08995 * 109.47206 * 214.99755 * 5 2 1 34 34 H 1.00896 * 111.00470 * 56.05041 * 6 5 2 35 35 H 1.09000 * 109.46874 * 60.00073 * 9 7 6 36 36 H 1.08998 * 109.46932 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47255 * 300.00101 * 9 7 6 38 38 H 1.08005 * 119.96654 * 0.02562 * 11 10 7 39 39 H 1.08000 * 120.03259 * 180.26925 * 12 11 10 40 40 H 0.97005 * 119.99499 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.04137 * 179.97438 * 23 13 12 42 42 H 1.07994 * 119.96237 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4274 1.6838 1.4370 5 6 2.0635 -1.3052 -0.0006 6 7 2.4127 -1.6682 -1.3805 7 6 3.1494 -2.9386 -1.4202 8 1 2.7706 -3.6026 -0.6433 9 6 4.6374 -2.6728 -1.1831 10 6 2.9633 -3.5853 -2.7686 11 6 2.9667 -2.8085 -3.9129 12 6 2.8021 -3.3988 -5.1504 13 6 2.6215 -4.7726 -5.2443 14 8 2.4543 -5.3552 -6.4589 15 6 2.3997 -6.7021 -6.4895 16 1 2.4055 -7.2638 -5.5672 17 6 2.3359 -7.3659 -7.7051 18 7 2.3282 -6.6815 -8.8287 19 14 2.2595 -9.2318 -7.7475 20 1 0.8410 -9.6701 -7.7161 21 1 2.9027 -9.7255 -8.9916 22 1 2.9742 -9.7835 -6.5684 23 6 2.6128 -5.5492 -4.0930 24 6 2.7832 -4.9535 -2.8587 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0854 -0.4343 29 1 3.0524 0.9035 1.8713 30 1 2.9721 2.6280 1.4371 31 1 1.5168 1.7900 2.0265 32 1 1.4385 -2.0857 0.4333 33 1 2.9741 -1.1992 0.5888 34 1 2.9381 -0.9312 -1.8264 35 1 4.7720 -2.2051 -0.2078 36 1 5.1839 -3.6155 -1.2121 37 1 5.0162 -2.0088 -1.9600 38 1 3.1031 -1.7397 -3.8389 39 1 2.8092 -2.7922 -6.0439 40 1 2.2832 -7.1460 -9.6792 41 1 2.4722 -6.6177 -4.1626 42 1 2.7770 -5.5570 -1.9631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313498180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = 2.689592 kcal Electronic energy + Delta-G solvation = -20398.988772 eV Core-core repulsion = 17344.631633 eV Total energy + Delta-G solvation = -3054.357139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18288 -37.97771 -36.64621 -34.83668 -32.24639 -31.22125 -30.16367 -29.63442 -27.84622 -25.39946 -25.06867 -23.75824 -22.51061 -21.73242 -20.03295 -18.53901 -17.86979 -16.91909 -15.91636 -15.44861 -15.05422 -14.70367 -14.43989 -14.23765 -14.03659 -13.57371 -13.48403 -13.38948 -12.90186 -12.82421 -12.65372 -12.45681 -12.28551 -12.09351 -11.88203 -11.64181 -11.35824 -11.15066 -11.13492 -10.90081 -10.65061 -10.54934 -10.36911 -10.35830 -9.28767 -9.25194 -8.77860 -8.30109 -8.08357 -7.08388 -6.40383 -3.99034 2.09655 2.30469 2.41554 3.15332 3.15961 3.20771 4.00429 4.31083 4.61049 4.63581 4.77250 5.00476 5.08144 5.14451 5.16353 5.26399 5.32986 5.36992 5.40558 5.46595 5.60149 5.66369 5.69079 5.71799 5.82032 5.85485 5.89670 5.95070 6.01107 6.17986 6.29454 6.48586 6.51350 6.77275 6.78276 6.92066 7.07300 7.13611 7.36558 7.44329 7.49321 7.52156 7.90611 8.05092 9.05543 9.77341 10.77964 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037884 B = 0.003009 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.923347 B = 9302.098054 C = 9446.232641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C -0.090 4.090 4 C -0.146 4.146 5 C 0.095 3.905 6 N -0.673 5.673 7 C 0.140 3.860 8 H 0.075 0.925 9 C -0.176 4.176 10 C -0.166 4.166 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.153 3.847 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.233 4.233 24 C -0.068 4.068 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.339 0.661 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.269 0.731 41 H 0.125 0.875 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 11.321 17.907 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.127 4.127 4 C -0.203 4.203 5 C -0.034 4.034 6 N -0.304 5.304 7 C 0.031 3.969 8 H 0.093 0.907 9 C -0.235 4.235 10 C -0.167 4.167 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.100 3.900 14 O -0.084 6.084 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.252 4.252 24 C -0.087 4.087 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.157 0.843 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.590 11.060 17.299 20.541 hybrid contribution 0.770 -0.739 0.297 1.108 sum 1.360 10.321 17.596 20.445 Atomic orbital electron populations 1.23698 0.95218 1.01739 1.00265 1.21613 0.95448 0.94826 1.00736 1.20595 1.00042 0.94736 0.97339 1.21729 1.01427 1.01006 0.96162 1.20967 0.97837 0.94273 0.90333 1.60664 1.49018 1.04966 1.15708 1.20209 0.90743 0.90473 0.95474 0.90713 1.22494 0.97933 1.02443 1.00597 1.19064 1.11093 0.93201 0.93372 1.20304 0.97704 0.97964 0.91141 1.20208 1.10989 0.92505 0.97667 1.19384 0.92194 0.92285 0.86154 1.83978 1.78133 1.22507 1.23796 1.21308 1.52533 0.78505 0.94335 0.89161 1.25275 0.96727 1.00418 0.94163 1.70045 1.46412 1.36024 0.97511 0.85727 0.78715 0.80801 0.78261 1.19921 1.20300 1.19255 1.21102 1.11414 1.00587 0.92146 1.20535 0.98158 0.93659 0.96365 0.88758 0.88258 0.91553 0.91376 0.92737 0.92674 0.92683 0.90740 0.95038 0.84285 0.93457 0.91831 0.92366 0.87403 0.86743 0.92108 0.85711 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 13.88 29.02 0.40 -1.26 16 2 C -0.13 -1.22 4.82 -101.06 -0.49 -1.71 16 3 C -0.09 -0.73 6.10 -27.88 -0.17 -0.90 16 4 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 5 C 0.09 0.99 5.65 -4.97 -0.03 0.96 16 6 N -0.67 -8.29 5.68 -109.21 -0.62 -8.92 16 7 C 0.14 1.86 2.79 -68.86 -0.19 1.67 16 8 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 9 C -0.18 -2.03 9.14 37.16 0.34 -1.69 16 10 C -0.17 -2.84 4.96 -104.58 -0.52 -3.36 16 11 C -0.05 -0.96 9.32 -39.61 -0.37 -1.33 16 12 C -0.19 -4.22 9.99 -39.40 -0.39 -4.61 16 13 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.18 -5.26 9.76 0.05 0.00 -5.25 16 15 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.73 13.67 55.48 0.76 -24.98 16 19 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 24 C -0.07 -1.27 9.66 -39.61 -0.38 -1.66 16 25 H 0.09 0.80 7.99 -52.48 -0.42 0.38 16 26 H 0.10 1.00 7.99 -52.48 -0.42 0.58 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.81 7.90 -51.93 -0.41 0.39 16 33 H 0.03 0.30 7.44 -51.93 -0.39 -0.08 16 34 H 0.34 3.92 7.80 -39.29 -0.31 3.61 16 35 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.11 1.68 7.23 -52.48 -0.38 1.30 16 39 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 42 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -30.51 350.52 -8.06 -38.57 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.61 Total: 5.91 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -1.86 Total: -26.40 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.14 Total: -33.89 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.51 -8.06 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.262 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds