Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00394 * 2 1 4 4 C 1.52999 * 109.46844 * 95.00090 * 3 2 1 5 5 C 1.50706 * 119.99934 * 180.02562 * 2 1 3 6 6 N 1.46901 * 109.46701 * 94.99749 * 5 2 1 7 7 C 1.46903 * 110.99623 * 180.02562 * 6 5 2 8 8 H 1.08997 * 109.47148 * 34.99954 * 7 6 5 9 9 C 1.53002 * 109.47101 * 274.99787 * 7 6 5 10 10 C 1.50704 * 109.47151 * 155.00233 * 7 6 5 11 11 C 1.38299 * 119.93072 * 39.72221 * 10 7 6 12 12 C 1.38099 * 120.06809 * 179.72372 * 11 10 7 13 13 C 1.38876 * 119.92991 * 0.55702 * 12 11 10 14 14 O 1.35750 * 120.06959 * 179.74905 * 13 12 11 15 15 C 1.34827 * 117.00104 * 174.43819 * 14 13 12 16 16 H 1.07994 * 120.00121 * 5.05448 * 15 14 13 17 17 C 1.38654 * 119.99939 * 185.05211 * 15 14 13 18 18 N 1.31560 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99963 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47656 * 90.00041 * 19 17 15 21 21 H 1.48507 * 109.47218 * 210.00281 * 19 17 15 22 22 H 1.48508 * 109.47250 * 329.99484 * 19 17 15 23 23 C 1.38875 * 119.86408 * 359.71864 * 13 12 11 24 24 C 1.38105 * 119.92901 * 0.02562 * 23 13 12 25 25 H 1.08003 * 120.00082 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.00455 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47364 * 215.00196 * 3 2 1 28 28 H 1.08996 * 109.46777 * 335.00183 * 3 2 1 29 29 H 1.08996 * 109.47357 * 60.00448 * 4 3 2 30 30 H 1.09003 * 109.47023 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47227 * 300.00191 * 4 3 2 32 32 H 1.09002 * 109.46843 * 335.00259 * 5 2 1 33 33 H 1.08995 * 109.47206 * 214.99755 * 5 2 1 34 34 H 1.00896 * 111.00470 * 56.05041 * 6 5 2 35 35 H 1.09000 * 109.46874 * 60.00073 * 9 7 6 36 36 H 1.08998 * 109.46932 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47255 * 300.00101 * 9 7 6 38 38 H 1.08005 * 119.96654 * 0.02562 * 11 10 7 39 39 H 1.08000 * 120.03259 * 180.26925 * 12 11 10 40 40 H 0.97005 * 119.99499 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.04137 * 179.97438 * 23 13 12 42 42 H 1.07994 * 119.96237 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4274 1.6838 1.4370 5 6 2.0635 -1.3052 -0.0006 6 7 2.4127 -1.6682 -1.3805 7 6 3.1494 -2.9386 -1.4202 8 1 2.7706 -3.6026 -0.6433 9 6 4.6374 -2.6728 -1.1831 10 6 2.9633 -3.5853 -2.7686 11 6 2.9667 -2.8085 -3.9129 12 6 2.8021 -3.3988 -5.1504 13 6 2.6215 -4.7726 -5.2443 14 8 2.4543 -5.3552 -6.4589 15 6 2.3997 -6.7021 -6.4895 16 1 2.4055 -7.2638 -5.5672 17 6 2.3359 -7.3659 -7.7051 18 7 2.3282 -6.6815 -8.8287 19 14 2.2595 -9.2318 -7.7475 20 1 0.8410 -9.6701 -7.7161 21 1 2.9027 -9.7255 -8.9916 22 1 2.9742 -9.7835 -6.5684 23 6 2.6128 -5.5492 -4.0930 24 6 2.7832 -4.9535 -2.8587 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0854 -0.4343 29 1 3.0524 0.9035 1.8713 30 1 2.9721 2.6280 1.4371 31 1 1.5168 1.7900 2.0265 32 1 1.4385 -2.0857 0.4333 33 1 2.9741 -1.1992 0.5888 34 1 2.9381 -0.9312 -1.8264 35 1 4.7720 -2.2051 -0.2078 36 1 5.1839 -3.6155 -1.2121 37 1 5.0162 -2.0088 -1.9600 38 1 3.1031 -1.7397 -3.8389 39 1 2.8092 -2.7922 -6.0439 40 1 2.2832 -7.1460 -9.6792 41 1 2.4722 -6.6177 -4.1626 42 1 2.7770 -5.5570 -1.9631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313498180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -15.179036 kcal Electronic energy + Delta-G solvation = -20399.763614 eV Core-core repulsion = 17344.631633 eV Total energy + Delta-G solvation = -3055.131981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83289 -39.24944 -37.92157 -35.97491 -34.23820 -32.16074 -31.74123 -30.63409 -29.20357 -27.34444 -26.02063 -24.37208 -23.95673 -23.30252 -21.47847 -19.73476 -19.34784 -18.76575 -16.99237 -16.54080 -16.23713 -16.17783 -15.72487 -15.54944 -15.49727 -15.11338 -14.83637 -14.43186 -14.14370 -13.98502 -13.92248 -13.54832 -13.50497 -13.27514 -12.92675 -12.87922 -12.69509 -12.51061 -12.36653 -12.14204 -12.02631 -11.83494 -11.70708 -11.40044 -11.13643 -10.77070 -10.01013 -9.72695 -9.24714 -8.83062 -8.45611 -6.13517 0.64895 0.75518 1.34957 1.36360 1.44795 1.52701 2.18834 2.84251 3.17257 3.45271 3.56032 3.91160 3.96572 4.07417 4.12600 4.21852 4.35131 4.40587 4.41570 4.56154 4.58258 4.63878 4.73589 4.76082 4.84591 4.91652 4.95461 5.03284 5.10938 5.13837 5.18806 5.20984 5.28983 5.33162 5.39601 5.62290 5.74964 5.77111 5.83018 6.04124 6.05349 6.20421 6.29793 6.53376 6.99251 7.81914 8.78022 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037884 B = 0.003009 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.923347 B = 9302.098054 C = 9446.232641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.129 4.129 3 C -0.089 4.089 4 C -0.143 4.143 5 C 0.097 3.903 6 N -0.685 5.685 7 C 0.144 3.856 8 H 0.086 0.914 9 C -0.170 4.170 10 C -0.141 4.141 11 C -0.046 4.046 12 C -0.207 4.207 13 C 0.110 3.890 14 O -0.235 6.235 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.242 4.242 24 C -0.069 4.069 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.344 0.656 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 11.903 21.192 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.130 4.130 3 C -0.126 4.126 4 C -0.201 4.201 5 C -0.031 4.031 6 N -0.316 5.316 7 C 0.035 3.965 8 H 0.104 0.896 9 C -0.229 4.229 10 C -0.142 4.142 11 C -0.064 4.064 12 C -0.226 4.226 13 C 0.060 3.940 14 O -0.143 6.143 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.261 4.261 24 C -0.087 4.087 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.205 11.681 20.647 23.753 hybrid contribution 0.595 -0.653 -0.433 0.984 sum 1.800 11.028 20.214 23.097 Atomic orbital electron populations 1.23798 0.95513 1.01948 1.00509 1.21727 0.95475 0.95249 1.00503 1.20613 0.99956 0.93959 0.98118 1.21708 1.01524 1.01487 0.95345 1.20959 0.98432 0.94442 0.89235 1.60554 1.49037 1.04758 1.17272 1.20174 0.92411 0.91097 0.92838 0.89575 1.22421 0.95987 1.02535 1.01974 1.19652 1.06500 0.92770 0.95265 1.20652 0.96175 0.99660 0.89961 1.20460 1.11330 0.91597 0.99232 1.19920 0.94424 0.93694 0.85988 1.83939 1.81188 1.22918 1.26207 1.21812 1.52864 0.78971 0.95209 0.88218 1.26600 0.96024 1.06216 0.93367 1.70195 1.49131 1.38495 0.98326 0.84584 0.79273 0.73455 0.78866 1.18828 1.19550 1.17649 1.21209 1.11756 1.00259 0.92894 1.20919 0.96932 0.94799 0.96078 0.87774 0.89020 0.91272 0.91222 0.92694 0.91750 0.92754 0.91149 0.93566 0.83644 0.91111 0.92156 0.92419 0.84229 0.87307 0.91898 0.86539 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 13.88 67.79 0.94 -2.19 16 2 C -0.13 -2.15 4.82 -16.48 -0.08 -2.23 16 3 C -0.09 -1.20 6.10 29.85 0.18 -1.02 16 4 C -0.14 -1.62 9.89 71.98 0.71 -0.91 16 5 C 0.10 1.69 5.65 85.56 0.48 2.17 16 6 N -0.69 -14.34 5.68 -499.44 -2.84 -17.18 16 7 C 0.14 3.25 2.79 44.17 0.12 3.37 16 8 H 0.09 1.83 7.66 -2.39 -0.02 1.81 16 9 C -0.17 -3.20 9.14 71.98 0.66 -2.54 16 10 C -0.14 -4.42 4.96 -19.83 -0.10 -4.52 16 11 C -0.05 -1.60 9.32 22.25 0.21 -1.39 16 12 C -0.21 -9.16 9.99 22.39 0.22 -8.94 16 13 C 0.11 5.65 6.65 22.58 0.15 5.80 16 14 O -0.24 -14.61 9.76 -22.72 -0.22 -14.83 16 15 C -0.41 -24.62 9.49 67.92 0.64 -23.98 16 16 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 17 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 18 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 19 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 23 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 24 C -0.07 -2.42 9.66 22.25 0.21 -2.21 16 25 H 0.10 1.57 7.99 -2.91 -0.02 1.55 16 26 H 0.09 1.71 7.99 -2.91 -0.02 1.69 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.92 7.99 -2.39 -0.02 0.90 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.29 7.90 -2.39 -0.02 1.27 16 33 H 0.05 0.69 7.44 -2.39 -0.02 0.67 16 34 H 0.34 6.61 7.80 -89.70 -0.70 5.91 16 35 H 0.07 1.05 7.45 -2.39 -0.02 1.03 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 38 H 0.14 3.93 7.23 -2.91 -0.02 3.91 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 41 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 42 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 Total: -1.00 -70.54 350.52 4.59 -65.95 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.30 Total: 28.10 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 5.03 Total: -50.21 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.54 Total: -74.72 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.54 4.59 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.770 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds