Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99689 * 2 1 4 4 C 1.52995 * 109.47264 * 94.99471 * 3 2 1 5 5 C 1.50697 * 120.00305 * 179.97438 * 2 1 3 6 6 N 1.46904 * 109.47212 * 95.00612 * 5 2 1 7 7 C 1.46892 * 111.00131 * 180.02562 * 6 5 2 8 8 H 1.09008 * 109.47114 * 324.99774 * 7 6 5 9 9 C 1.52997 * 109.47295 * 84.99918 * 7 6 5 10 10 C 1.50696 * 109.47167 * 204.99735 * 7 6 5 11 11 C 1.38300 * 119.93262 * 319.72911 * 10 7 6 12 12 C 1.38104 * 120.07247 * 179.72590 * 11 10 7 13 13 C 1.38880 * 119.92810 * 0.54158 * 12 11 10 14 14 O 1.35747 * 120.07174 * 179.75066 * 13 12 11 15 15 C 1.34825 * 117.00597 * 174.44425 * 14 13 12 16 16 H 1.08005 * 119.99735 * 5.05211 * 15 14 13 17 17 C 1.38651 * 120.00550 * 185.05478 * 15 14 13 18 18 N 1.31549 * 120.00140 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99721 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47541 * 89.99511 * 19 17 15 21 21 H 1.48499 * 109.47053 * 210.00090 * 19 17 15 22 22 H 1.48503 * 109.47039 * 329.99530 * 19 17 15 23 23 C 1.38882 * 119.86199 * 359.72799 * 13 12 11 24 24 C 1.38098 * 119.93192 * 0.02562 * 23 13 12 25 25 H 1.07997 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99545 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46790 * 214.99644 * 3 2 1 28 28 H 1.08996 * 109.47071 * 334.99202 * 3 2 1 29 29 H 1.08995 * 109.47167 * 299.99873 * 4 3 2 30 30 H 1.08998 * 109.46894 * 60.00209 * 4 3 2 31 31 H 1.09002 * 109.46797 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47373 * 335.00316 * 5 2 1 33 33 H 1.09004 * 109.46922 * 215.00164 * 5 2 1 34 34 H 1.00903 * 110.99438 * 303.95835 * 6 5 2 35 35 H 1.09004 * 109.47560 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.46827 * 299.99503 * 9 7 6 37 37 H 1.08994 * 109.47650 * 59.99661 * 9 7 6 38 38 H 1.08005 * 119.96345 * 359.97438 * 11 10 7 39 39 H 1.08000 * 120.03674 * 180.27353 * 12 11 10 40 40 H 0.97001 * 120.00064 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.03671 * 179.97438 * 23 13 12 42 42 H 1.08000 * 119.97139 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4272 1.6841 1.4370 5 6 2.0635 -1.3050 0.0006 6 7 2.4130 -1.6693 -1.3790 7 6 3.1497 -2.9395 -1.4175 8 1 3.7882 -3.0162 -0.5373 9 6 2.1577 -4.1043 -1.4310 10 6 4.0000 -2.9896 -2.6607 11 6 3.4999 -2.5123 -3.8585 12 6 4.2786 -2.5516 -4.9983 13 6 5.5612 -3.0814 -4.9433 14 8 6.3274 -3.1261 -6.0630 15 6 7.6005 -3.5451 -5.9174 16 1 7.9446 -3.9038 -4.9585 17 6 8.4682 -3.5156 -6.9985 18 7 9.7105 -3.9241 -6.8561 19 14 7.8733 -2.8946 -8.6567 20 1 8.1040 -1.4306 -8.7489 21 1 8.6204 -3.5827 -9.7401 22 1 6.4223 -3.1769 -8.7996 23 6 6.0586 -3.5650 -3.7402 24 6 5.2768 -3.5183 -2.6028 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 2.9742 1.1989 -0.5894 28 1 1.4385 2.0855 -0.4344 29 1 1.5165 1.7904 2.0263 30 1 3.0521 0.9039 1.8713 31 1 2.9725 2.6279 1.4368 32 1 1.4387 -2.0852 0.4352 33 1 2.9742 -1.1984 0.5900 34 1 1.5901 -1.7110 -1.9614 35 1 2.7044 -5.0469 -1.4591 36 1 1.5428 -4.0681 -0.5317 37 1 1.5193 -4.0277 -2.3110 38 1 2.5006 -2.1048 -3.9017 39 1 3.8891 -2.1747 -5.9325 40 1 10.3176 -3.9031 -7.6124 41 1 7.0554 -3.9780 -3.6942 42 1 5.6630 -3.8938 -1.6667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313498181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = 4.328617 kcal Electronic energy + Delta-G solvation = -20463.444605 eV Core-core repulsion = 17409.158539 eV Total energy + Delta-G solvation = -3054.286066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32655 -38.08612 -36.76245 -34.92388 -32.35996 -31.28617 -30.25341 -29.68129 -28.05546 -25.41763 -25.09111 -23.63772 -22.47639 -21.90727 -20.01872 -18.56652 -17.78693 -17.23792 -16.06555 -15.30182 -15.19609 -14.77215 -14.54564 -14.19287 -13.79824 -13.72356 -13.66826 -13.32900 -13.01930 -12.81788 -12.70858 -12.54407 -12.24447 -12.22765 -12.11140 -11.66765 -11.44479 -11.12222 -11.00300 -10.97812 -10.68846 -10.56123 -10.49849 -10.11026 -9.37524 -9.33755 -8.82889 -8.37336 -8.18281 -7.23917 -6.38472 -4.04857 1.99392 2.19698 2.29323 3.24151 3.28032 3.42691 4.25648 4.26652 4.55746 4.62258 4.70238 4.90464 5.04351 5.10230 5.15376 5.24643 5.26318 5.28578 5.39491 5.43089 5.52827 5.63829 5.68065 5.72881 5.81485 5.85336 5.87124 5.92764 6.06340 6.12377 6.19401 6.39399 6.41220 6.61987 6.67379 6.81196 6.96419 7.15716 7.33392 7.38733 7.40046 7.66510 7.84148 8.07952 8.97281 9.60861 10.69439 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.003311 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.538562 B = 8453.558040 C = 8726.137464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.089 4.089 4 C -0.145 4.145 5 C 0.091 3.909 6 N -0.673 5.673 7 C 0.139 3.861 8 H 0.077 0.923 9 C -0.176 4.176 10 C -0.157 4.157 11 C -0.055 4.055 12 C -0.194 4.194 13 C 0.158 3.842 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.220 4.220 24 C -0.070 4.070 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.339 0.661 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 5.551 13.683 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.203 4.203 5 C -0.037 4.037 6 N -0.304 5.304 7 C 0.029 3.971 8 H 0.095 0.905 9 C -0.235 4.235 10 C -0.159 4.159 11 C -0.074 4.074 12 C -0.213 4.213 13 C 0.107 3.893 14 O -0.125 6.125 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.239 4.239 24 C -0.088 4.088 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.726 5.951 13.332 21.459 hybrid contribution -0.696 -0.492 -0.476 0.976 sum -16.423 5.459 12.857 21.559 Atomic orbital electron populations 1.23694 0.95277 1.01656 1.02953 1.21714 0.94876 0.95712 0.98312 1.20583 1.00785 0.93863 0.97443 1.21718 1.01202 1.01232 0.96110 1.21002 0.98815 0.92934 0.90995 1.60614 1.28162 1.32806 1.08798 1.20228 0.93768 0.86540 0.96516 0.90509 1.22494 0.99764 1.00179 1.01062 1.19129 0.95424 1.07294 0.94032 1.20313 0.98205 0.97478 0.91402 1.20203 0.93732 1.08285 0.99072 1.19124 0.90858 0.93063 0.86292 1.83569 1.23907 1.75987 1.29049 1.20762 0.82771 1.42526 1.00351 0.87690 1.24456 0.94136 0.96220 0.99215 1.69645 1.04062 1.45595 1.32714 0.86183 0.79889 0.79150 0.81689 1.19898 1.20852 1.18383 1.21222 1.02001 1.07962 0.92728 1.20596 0.93090 0.97936 0.97224 0.88480 0.88838 0.90233 0.91710 0.93006 0.92637 0.92563 0.94958 0.90513 0.84211 0.91748 0.93381 0.92359 0.87223 0.86743 0.91114 0.85074 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 13.88 29.02 0.40 -1.26 16 2 C -0.11 -0.99 4.82 -101.06 -0.49 -1.48 16 3 C -0.09 -0.83 6.10 -27.88 -0.17 -1.00 16 4 C -0.15 -1.16 9.89 37.15 0.37 -0.80 16 5 C 0.09 0.91 5.65 -4.97 -0.03 0.88 16 6 N -0.67 -7.87 5.70 -109.22 -0.62 -8.49 16 7 C 0.14 1.76 2.78 -68.87 -0.19 1.56 16 8 H 0.08 0.96 7.66 -51.92 -0.40 0.56 16 9 C -0.18 -1.94 9.14 37.16 0.34 -1.60 16 10 C -0.16 -2.57 4.96 -104.57 -0.52 -3.09 16 11 C -0.06 -0.95 9.31 -39.61 -0.37 -1.31 16 12 C -0.19 -3.89 9.99 -39.39 -0.39 -4.29 16 13 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 14 O -0.22 -5.89 8.58 0.07 0.00 -5.89 16 15 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 16 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.74 13.96 55.48 0.77 -24.96 16 19 Si 0.91 21.93 28.62 -169.99 -4.86 17.06 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 24 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 25 H 0.10 0.74 7.99 -52.49 -0.42 0.32 16 26 H 0.09 0.73 7.99 -52.48 -0.42 0.31 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.56 7.99 -51.93 -0.41 0.14 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.30 7.28 -51.93 -0.38 -0.08 16 33 H 0.08 0.79 8.06 -51.93 -0.42 0.38 16 34 H 0.34 3.74 7.81 -39.29 -0.31 3.43 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 37 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.11 1.59 7.25 -52.48 -0.38 1.21 16 39 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 3.00 5.64 -52.49 -0.30 2.71 16 42 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -29.20 349.42 -7.91 -37.11 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.62 Total: 4.71 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -1.84 Total: -24.81 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.15 Total: -33.45 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: 0.00 Total: -5.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.20 -7.91 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.438 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds