Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99689 * 2 1 4 4 C 1.52995 * 109.47264 * 94.99471 * 3 2 1 5 5 C 1.50697 * 120.00305 * 179.97438 * 2 1 3 6 6 N 1.46904 * 109.47212 * 95.00612 * 5 2 1 7 7 C 1.46892 * 111.00131 * 180.02562 * 6 5 2 8 8 H 1.09008 * 109.47114 * 324.99774 * 7 6 5 9 9 C 1.52997 * 109.47295 * 84.99918 * 7 6 5 10 10 C 1.50696 * 109.47167 * 204.99735 * 7 6 5 11 11 C 1.38300 * 119.93262 * 319.72911 * 10 7 6 12 12 C 1.38104 * 120.07247 * 179.72590 * 11 10 7 13 13 C 1.38880 * 119.92810 * 0.54158 * 12 11 10 14 14 O 1.35747 * 120.07174 * 179.75066 * 13 12 11 15 15 C 1.34825 * 117.00597 * 174.44425 * 14 13 12 16 16 H 1.08005 * 119.99735 * 5.05211 * 15 14 13 17 17 C 1.38651 * 120.00550 * 185.05478 * 15 14 13 18 18 N 1.31549 * 120.00140 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99721 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47541 * 89.99511 * 19 17 15 21 21 H 1.48499 * 109.47053 * 210.00090 * 19 17 15 22 22 H 1.48503 * 109.47039 * 329.99530 * 19 17 15 23 23 C 1.38882 * 119.86199 * 359.72799 * 13 12 11 24 24 C 1.38098 * 119.93192 * 0.02562 * 23 13 12 25 25 H 1.07997 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99545 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46790 * 214.99644 * 3 2 1 28 28 H 1.08996 * 109.47071 * 334.99202 * 3 2 1 29 29 H 1.08995 * 109.47167 * 299.99873 * 4 3 2 30 30 H 1.08998 * 109.46894 * 60.00209 * 4 3 2 31 31 H 1.09002 * 109.46797 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47373 * 335.00316 * 5 2 1 33 33 H 1.09004 * 109.46922 * 215.00164 * 5 2 1 34 34 H 1.00903 * 110.99438 * 303.95835 * 6 5 2 35 35 H 1.09004 * 109.47560 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.46827 * 299.99503 * 9 7 6 37 37 H 1.08994 * 109.47650 * 59.99661 * 9 7 6 38 38 H 1.08005 * 119.96345 * 359.97438 * 11 10 7 39 39 H 1.08000 * 120.03674 * 180.27353 * 12 11 10 40 40 H 0.97001 * 120.00064 * 180.02562 * 18 17 15 41 41 H 1.07994 * 120.03671 * 179.97438 * 23 13 12 42 42 H 1.08000 * 119.97139 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4272 1.6841 1.4370 5 6 2.0635 -1.3050 0.0006 6 7 2.4130 -1.6693 -1.3790 7 6 3.1497 -2.9395 -1.4175 8 1 3.7882 -3.0162 -0.5373 9 6 2.1577 -4.1043 -1.4310 10 6 4.0000 -2.9896 -2.6607 11 6 3.4999 -2.5123 -3.8585 12 6 4.2786 -2.5516 -4.9983 13 6 5.5612 -3.0814 -4.9433 14 8 6.3274 -3.1261 -6.0630 15 6 7.6005 -3.5451 -5.9174 16 1 7.9446 -3.9038 -4.9585 17 6 8.4682 -3.5156 -6.9985 18 7 9.7105 -3.9241 -6.8561 19 14 7.8733 -2.8946 -8.6567 20 1 8.1040 -1.4306 -8.7489 21 1 8.6204 -3.5827 -9.7401 22 1 6.4223 -3.1769 -8.7996 23 6 6.0586 -3.5650 -3.7402 24 6 5.2768 -3.5183 -2.6028 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 2.9742 1.1989 -0.5894 28 1 1.4385 2.0855 -0.4344 29 1 1.5165 1.7904 2.0263 30 1 3.0521 0.9039 1.8713 31 1 2.9725 2.6279 1.4368 32 1 1.4387 -2.0852 0.4352 33 1 2.9742 -1.1984 0.5900 34 1 1.5901 -1.7110 -1.9614 35 1 2.7044 -5.0469 -1.4591 36 1 1.5428 -4.0681 -0.5317 37 1 1.5193 -4.0277 -2.3110 38 1 2.5006 -2.1048 -3.9017 39 1 3.8891 -2.1747 -5.9325 40 1 10.3176 -3.9031 -7.6124 41 1 7.0554 -3.9780 -3.6942 42 1 5.6630 -3.8938 -1.6667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313498181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -12.125074 kcal Electronic energy + Delta-G solvation = -20464.158090 eV Core-core repulsion = 17409.158539 eV Total energy + Delta-G solvation = -3054.999551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93993 -39.32841 -37.97068 -36.01100 -34.42156 -32.25179 -31.77041 -30.62880 -29.35134 -27.24684 -26.04667 -24.31755 -23.89248 -23.40049 -21.43396 -19.70187 -19.36431 -19.02128 -17.06984 -16.72248 -16.18271 -16.05500 -15.71306 -15.60671 -15.41966 -15.26893 -14.86068 -14.38367 -14.20937 -14.11375 -13.89746 -13.85986 -13.58689 -13.44497 -13.02111 -12.89630 -12.66526 -12.52334 -12.28459 -12.13825 -12.03265 -11.78180 -11.68100 -11.45755 -11.24025 -10.88334 -10.04786 -9.75812 -9.26601 -8.91278 -8.49243 -6.21414 0.61274 0.69533 1.31256 1.33735 1.36160 1.52213 2.28788 2.77715 3.06625 3.18960 3.43846 3.92139 3.95559 4.00728 4.10473 4.18742 4.36581 4.38495 4.47093 4.58090 4.60397 4.62130 4.71293 4.75454 4.81017 4.91150 4.95112 5.01866 5.05370 5.17706 5.21228 5.26501 5.28703 5.40350 5.44055 5.59255 5.74214 5.77754 5.83107 5.93792 5.99215 6.18938 6.29833 6.54366 6.85498 7.61422 8.62677 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.003311 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.538562 B = 8453.558040 C = 8726.137464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.143 4.143 5 C 0.096 3.904 6 N -0.683 5.683 7 C 0.142 3.858 8 H 0.084 0.916 9 C -0.170 4.170 10 C -0.132 4.132 11 C -0.049 4.049 12 C -0.193 4.193 13 C 0.116 3.884 14 O -0.248 6.248 15 C -0.399 4.399 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.236 4.236 24 C -0.073 4.073 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.346 0.654 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.284 0.716 41 H 0.106 0.894 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.888 6.417 14.941 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.200 4.200 5 C -0.033 4.033 6 N -0.314 5.314 7 C 0.033 3.967 8 H 0.102 0.898 9 C -0.229 4.229 10 C -0.133 4.133 11 C -0.067 4.067 12 C -0.212 4.212 13 C 0.067 3.933 14 O -0.156 6.156 15 C -0.475 4.475 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.187 1.187 23 C -0.255 4.255 24 C -0.092 4.092 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.165 6.822 14.630 25.057 hybrid contribution 0.104 -0.719 -0.549 0.910 sum -19.062 6.103 14.080 24.471 Atomic orbital electron populations 1.23854 0.94918 1.02546 1.01035 1.21685 0.95246 0.95320 0.99988 1.20557 1.00000 0.94283 0.97775 1.21700 1.01526 1.01259 0.95534 1.20970 0.98912 0.93613 0.89766 1.60506 1.28732 1.31957 1.10245 1.20182 0.94046 0.88086 0.94403 0.89820 1.22420 0.99363 0.98777 1.02364 1.19679 0.94688 1.03323 0.95612 1.20723 0.99252 0.96353 0.90381 1.20518 0.92539 1.07385 1.00800 1.19660 0.92069 0.95324 0.86254 1.83508 1.23174 1.78215 1.30654 1.20707 0.84153 1.42878 0.99753 0.90290 1.25279 0.94223 0.96590 1.02821 1.69729 1.05218 1.47637 1.34076 0.85209 0.79075 0.78917 0.77456 1.19110 1.19142 1.18729 1.21231 1.01662 1.08703 0.93941 1.20893 0.93585 0.97759 0.96935 0.87697 0.87880 0.92200 0.91283 0.92254 0.92993 0.92239 0.93630 0.91123 0.83507 0.92263 0.91196 0.92072 0.83631 0.85686 0.90605 0.87638 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 13.88 67.79 0.94 -1.52 16 2 C -0.12 -1.92 4.82 -16.48 -0.08 -2.00 16 3 C -0.09 -1.46 6.10 29.85 0.18 -1.28 16 4 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 5 C 0.10 1.59 5.65 85.56 0.48 2.07 16 6 N -0.68 -13.41 5.70 -499.48 -2.85 -16.26 16 7 C 0.14 3.07 2.78 44.17 0.12 3.20 16 8 H 0.08 1.77 7.66 -2.38 -0.02 1.75 16 9 C -0.17 -3.04 9.14 71.98 0.66 -2.38 16 10 C -0.13 -3.96 4.96 -19.83 -0.10 -4.05 16 11 C -0.05 -1.53 9.31 22.25 0.21 -1.32 16 12 C -0.19 -7.60 9.99 22.39 0.22 -7.38 16 13 C 0.12 5.56 6.65 22.58 0.15 5.71 16 14 O -0.25 -13.83 8.58 -22.65 -0.19 -14.02 16 15 C -0.40 -24.07 9.95 67.92 0.68 -23.39 16 16 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 17 C 0.01 0.52 5.49 84.83 0.47 0.99 16 18 N -0.93 -56.29 13.96 21.61 0.30 -55.99 16 19 Si 0.97 46.35 28.62 68.60 1.96 48.31 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.24 -10.66 9.17 22.39 0.21 -10.45 16 24 C -0.07 -2.58 9.66 22.25 0.21 -2.37 16 25 H 0.10 1.23 7.99 -2.91 -0.02 1.21 16 26 H 0.10 1.18 7.99 -2.91 -0.02 1.15 16 27 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.07 1.05 7.99 -2.39 -0.02 1.03 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.65 7.28 -2.39 -0.02 0.63 16 33 H 0.07 1.26 8.06 -2.39 -0.02 1.25 16 34 H 0.35 6.09 7.81 -89.69 -0.70 5.39 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16 37 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.15 3.56 7.25 -2.91 -0.02 3.54 16 39 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 40 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 42 H 0.13 3.92 8.03 -2.91 -0.02 3.90 16 Total: -1.00 -66.26 349.42 4.58 -61.67 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.29 Total: 21.77 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 5.06 Total: -45.49 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.54 Total: -72.25 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.19 Total: -14.02 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal Total: -66.26 4.58 -61.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313498181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.549 kcal (2) G-P(sol) polarization free energy of solvation -66.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds