Wall clock time and date at job start Mon Mar 30 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 C 1.52996 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46995 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47213 * 54.99818 * 5 4 3 7 7 C 1.52999 * 109.47085 * 294.99662 * 5 4 3 8 8 C 1.50700 * 109.47168 * 175.00051 * 5 4 3 9 9 O 1.21288 * 119.99981 * 359.97438 * 8 5 4 10 10 N 1.34778 * 120.00138 * 179.97438 * 8 5 4 11 11 C 1.39933 * 119.99980 * 184.42078 * 10 8 5 12 12 C 1.39293 * 119.94789 * 144.42413 * 11 10 8 13 13 C 1.38489 * 120.42758 * 179.71854 * 12 11 10 14 14 C 1.37681 * 120.32138 * 0.55770 * 13 12 11 15 15 C 1.40739 * 119.88609 * 359.72116 * 14 13 12 16 16 C 1.41412 * 120.20735 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00138 * 148.82986 * 16 15 14 18 18 C 1.39930 * 120.00031 * 328.81686 * 16 15 14 19 19 N 1.30826 * 120.00182 * 167.79920 * 18 16 15 20 20 Si 1.86805 * 120.00024 * 347.80497 * 18 16 15 21 21 H 1.48500 * 109.47062 * 92.58117 * 20 18 16 22 22 H 1.48496 * 109.46945 * 212.58192 * 20 18 16 23 23 H 1.48496 * 109.47126 * 332.58406 * 20 18 16 24 24 C 1.38246 * 119.94790 * 324.69561 * 11 10 8 25 25 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47477 * 300.00065 * 1 2 3 27 27 H 1.09002 * 109.47445 * 60.00357 * 1 2 3 28 28 H 1.09001 * 109.47477 * 239.99935 * 2 1 3 29 29 H 1.09003 * 109.46964 * 119.99858 * 2 1 3 30 30 H 1.09001 * 109.47061 * 59.99680 * 3 2 1 31 31 H 1.09003 * 109.47148 * 299.99745 * 3 2 1 32 32 H 1.09001 * 109.47477 * 59.99935 * 4 3 2 33 33 H 1.09002 * 109.47445 * 299.99643 * 4 3 2 34 34 H 1.09003 * 109.47223 * 300.00150 * 7 5 4 35 35 H 1.09003 * 109.46660 * 59.99721 * 7 5 4 36 36 H 1.08996 * 109.47306 * 180.02562 * 7 5 4 37 37 H 0.96995 * 119.99797 * 4.70170 * 10 8 5 38 38 H 1.07998 * 119.78122 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.83599 * 180.27452 * 13 12 11 40 40 H 1.08003 * 120.05478 * 179.74395 * 14 13 12 41 41 H 0.96998 * 120.00575 * 180.02562 * 19 18 16 42 42 H 1.07993 * 120.16043 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4237 0.8423 7 6 3.6746 3.5699 -1.3068 8 6 5.5818 2.8869 0.1232 9 8 6.1850 1.8376 0.2031 10 7 6.2549 4.0544 0.1445 11 6 7.6541 4.0551 0.1656 12 6 8.3593 5.0438 -0.5166 13 6 9.7439 5.0574 -0.4977 14 6 10.4393 4.0861 0.1869 15 6 9.7404 3.0774 0.8760 16 6 10.4477 2.0767 1.5818 17 1 10.0186 1.6366 2.4698 18 6 11.7034 1.6566 1.1295 19 7 12.4610 0.9158 1.8969 20 14 12.2983 2.1535 -0.5702 21 1 13.0897 3.4061 -0.4710 22 1 13.1488 1.0737 -1.1322 23 1 11.1292 2.3757 -1.4584 24 6 8.3344 3.0712 0.8587 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1089 3.0313 -2.1491 35 1 2.5882 3.5685 -1.3959 36 1 4.0383 4.5974 -1.3066 37 1 5.7693 4.8940 0.1495 38 1 7.8226 5.8076 -1.0597 39 1 10.2810 5.8310 -1.0262 40 1 11.5192 4.0984 0.1954 41 1 13.3316 0.6249 1.5836 42 1 7.7886 2.3019 1.3846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313514563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:22 Heat of formation + Delta-G solvation = -46.796741 kcal Electronic energy + Delta-G solvation = -20779.504208 eV Core-core repulsion = 17723.001181 eV Total energy + Delta-G solvation = -3056.503028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02210 -37.69082 -36.30886 -34.46329 -33.54451 -33.03048 -30.28557 -29.20061 -28.15479 -25.35052 -25.13655 -23.04999 -21.46408 -20.82543 -20.65640 -19.37753 -17.74735 -16.76259 -15.92885 -15.83921 -15.39601 -15.02449 -14.55900 -14.24600 -14.03715 -13.59894 -13.36583 -13.19765 -12.84919 -12.70691 -12.52832 -12.28679 -11.99240 -11.82196 -11.58767 -11.43109 -11.07674 -11.04146 -11.01261 -10.76066 -10.65222 -10.64233 -10.54294 -9.96783 -9.73089 -9.49941 -9.03789 -8.93008 -7.62470 -7.12482 -6.85259 -4.43593 2.42907 2.65702 3.11774 3.17753 3.28042 3.39095 3.55829 4.05655 4.54949 4.58268 4.72293 4.78146 4.96859 5.01502 5.05646 5.30357 5.38512 5.47330 5.49401 5.56718 5.63033 5.72584 5.81054 5.83859 5.93483 5.99670 6.01019 6.09331 6.20248 6.25726 6.35720 6.43185 6.68169 6.79294 6.85860 7.24208 7.34870 7.54997 7.63217 7.94071 8.05232 8.11581 8.42226 8.67200 8.70624 8.87233 10.17598 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024382 B = 0.003885 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.125717 B = 7205.103107 C = 7961.969432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.144 4.144 8 C 0.505 3.495 9 O -0.512 6.512 10 N -0.671 5.671 11 C 0.160 3.840 12 C -0.263 4.263 13 C -0.066 4.066 14 C -0.249 4.249 15 C 0.101 3.899 16 C -0.440 4.440 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.816 5.816 20 Si 0.916 3.084 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.243 1.243 24 C -0.195 4.195 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.284 0.716 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.305 4.286 -5.205 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.130 4.130 6 H 0.112 0.888 7 C -0.202 4.202 8 C 0.292 3.708 9 O -0.386 6.386 10 N -0.315 5.315 11 C 0.068 3.932 12 C -0.284 4.284 13 C -0.085 4.085 14 C -0.268 4.268 15 C 0.097 3.903 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.136 4.136 19 N -0.441 5.441 20 Si 0.744 3.256 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.167 1.167 24 C -0.216 4.216 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.694 3.318 -5.067 18.702 hybrid contribution 0.246 0.663 -0.661 0.968 sum -17.448 3.981 -5.728 18.791 Atomic orbital electron populations 1.21776 0.96108 1.01445 1.01604 1.21534 0.95511 0.97050 1.02324 1.21682 0.95292 0.96811 1.01928 1.21425 0.94470 0.94244 1.03853 1.21322 0.92082 0.99344 1.00266 0.88762 1.21823 1.01907 1.00275 0.96181 1.20720 0.89723 0.83872 0.76530 1.90763 1.69652 1.31226 1.46991 1.43493 1.05969 1.08616 1.73412 1.17548 0.80373 0.97515 0.97810 1.20079 0.93916 1.03825 1.10573 1.20359 0.93292 0.97261 0.97594 1.21048 0.98225 0.98707 1.08869 1.17658 0.91442 0.91450 0.89710 1.19478 0.99855 1.17144 1.10453 0.89195 1.26139 0.95107 0.92872 0.99467 1.69652 1.09495 1.28161 1.36743 0.86268 0.79544 0.77076 0.82750 1.19802 1.22186 1.16650 1.21138 0.93837 1.01067 1.05560 0.92927 0.92855 0.92904 0.91959 0.91893 0.92086 0.91831 0.91194 0.90908 0.92009 0.91388 0.92252 0.76661 0.88700 0.88501 0.88184 0.90537 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.12 -1.05 4.97 -26.73 -0.13 -1.18 16 4 C -0.10 -1.19 4.03 -26.73 -0.11 -1.30 16 5 C -0.11 -1.25 2.72 -91.77 -0.25 -1.50 16 6 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 8 C 0.51 8.59 6.99 -10.98 -0.08 8.51 16 9 O -0.51 -11.23 13.37 5.55 0.07 -11.16 16 10 N -0.67 -11.27 5.19 -9.91 -0.05 -11.32 16 11 C 0.16 3.45 6.29 -83.76 -0.53 2.92 16 12 C -0.26 -5.42 9.97 -39.10 -0.39 -5.81 16 13 C -0.07 -1.45 10.02 -39.69 -0.40 -1.85 16 14 C -0.25 -6.19 6.99 -38.84 -0.27 -6.46 16 15 C 0.10 2.71 5.13 -106.85 -0.55 2.16 16 16 C -0.44 -12.61 9.60 -37.74 -0.36 -12.97 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 18 C 0.08 2.25 5.47 -17.35 -0.09 2.16 16 19 N -0.82 -22.70 13.93 55.55 0.77 -21.93 16 20 Si 0.92 21.92 24.40 -169.99 -4.15 17.77 16 21 H -0.27 -6.20 6.67 56.52 0.38 -5.82 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.24 -6.03 6.66 56.52 0.38 -5.65 16 24 C -0.19 -4.92 8.43 -38.68 -0.33 -5.25 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 36 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 37 H 0.40 5.06 8.39 -40.82 -0.34 4.71 16 38 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.10 2.47 4.40 -52.48 -0.23 2.24 16 41 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 42 H 0.12 3.13 6.23 -52.49 -0.33 2.80 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -31.30 336.16 -7.88 -39.18 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.65 Total: 5.96 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.95 Total: -23.57 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.72 Total: -33.25 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.15 Total: 17.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.30 -7.88 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.617 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds