Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46995 * 2 1 4 4 C 1.52996 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46995 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47213 * 54.99818 * 5 4 3 7 7 C 1.52999 * 109.47085 * 294.99662 * 5 4 3 8 8 C 1.50700 * 109.47168 * 175.00051 * 5 4 3 9 9 O 1.21288 * 119.99981 * 359.97438 * 8 5 4 10 10 N 1.34778 * 120.00138 * 179.97438 * 8 5 4 11 11 C 1.39933 * 119.99980 * 184.42078 * 10 8 5 12 12 C 1.39293 * 119.94789 * 144.42413 * 11 10 8 13 13 C 1.38489 * 120.42758 * 179.71854 * 12 11 10 14 14 C 1.37681 * 120.32138 * 0.55770 * 13 12 11 15 15 C 1.40739 * 119.88609 * 359.72116 * 14 13 12 16 16 C 1.41412 * 120.20735 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00138 * 148.82986 * 16 15 14 18 18 C 1.39930 * 120.00031 * 328.81686 * 16 15 14 19 19 N 1.30826 * 120.00182 * 167.79920 * 18 16 15 20 20 Si 1.86805 * 120.00024 * 347.80497 * 18 16 15 21 21 H 1.48500 * 109.47062 * 92.58117 * 20 18 16 22 22 H 1.48496 * 109.46945 * 212.58192 * 20 18 16 23 23 H 1.48496 * 109.47126 * 332.58406 * 20 18 16 24 24 C 1.38246 * 119.94790 * 324.69561 * 11 10 8 25 25 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47477 * 300.00065 * 1 2 3 27 27 H 1.09002 * 109.47445 * 60.00357 * 1 2 3 28 28 H 1.09001 * 109.47477 * 239.99935 * 2 1 3 29 29 H 1.09003 * 109.46964 * 119.99858 * 2 1 3 30 30 H 1.09001 * 109.47061 * 59.99680 * 3 2 1 31 31 H 1.09003 * 109.47148 * 299.99745 * 3 2 1 32 32 H 1.09001 * 109.47477 * 59.99935 * 4 3 2 33 33 H 1.09002 * 109.47445 * 299.99643 * 4 3 2 34 34 H 1.09003 * 109.47223 * 300.00150 * 7 5 4 35 35 H 1.09003 * 109.46660 * 59.99721 * 7 5 4 36 36 H 1.08996 * 109.47306 * 180.02562 * 7 5 4 37 37 H 0.96995 * 119.99797 * 4.70170 * 10 8 5 38 38 H 1.07998 * 119.78122 * 0.02562 * 12 11 10 39 39 H 1.07997 * 119.83599 * 180.27452 * 13 12 11 40 40 H 1.08003 * 120.05478 * 179.74395 * 14 13 12 41 41 H 0.96998 * 120.00575 * 180.02562 * 19 18 16 42 42 H 1.07993 * 120.16043 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4237 0.8423 7 6 3.6746 3.5699 -1.3068 8 6 5.5818 2.8869 0.1232 9 8 6.1850 1.8376 0.2031 10 7 6.2549 4.0544 0.1445 11 6 7.6541 4.0551 0.1656 12 6 8.3593 5.0438 -0.5166 13 6 9.7439 5.0574 -0.4977 14 6 10.4393 4.0861 0.1869 15 6 9.7404 3.0774 0.8760 16 6 10.4477 2.0767 1.5818 17 1 10.0186 1.6366 2.4698 18 6 11.7034 1.6566 1.1295 19 7 12.4610 0.9158 1.8969 20 14 12.2983 2.1535 -0.5702 21 1 13.0897 3.4061 -0.4710 22 1 13.1488 1.0737 -1.1322 23 1 11.1292 2.3757 -1.4584 24 6 8.3344 3.0712 0.8587 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1089 3.0313 -2.1491 35 1 2.5882 3.5685 -1.3959 36 1 4.0383 4.5974 -1.3066 37 1 5.7693 4.8940 0.1495 38 1 7.8226 5.8076 -1.0597 39 1 10.2810 5.8310 -1.0262 40 1 11.5192 4.0984 0.1954 41 1 13.3316 0.6249 1.5836 42 1 7.7886 2.3019 1.3846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313514563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -66.236851 kcal Electronic energy + Delta-G solvation = -20780.347195 eV Core-core repulsion = 17723.001181 eV Total energy + Delta-G solvation = -3057.346014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47998 -39.37575 -37.31132 -36.18493 -35.07562 -34.23850 -32.19253 -30.60156 -29.25040 -27.16940 -26.18095 -24.30876 -22.76873 -22.58699 -21.71157 -20.69205 -19.60155 -18.19066 -17.63738 -17.17366 -16.73433 -16.45274 -16.15789 -15.65186 -15.23637 -14.86547 -14.60750 -14.40668 -14.26946 -14.16636 -13.89533 -13.48851 -13.40337 -13.09107 -12.86864 -12.64616 -12.63449 -12.43786 -12.18425 -11.87939 -11.84487 -11.79260 -11.67176 -11.52455 -11.32697 -11.27232 -10.83424 -10.51882 -9.53944 -8.89417 -8.87786 -6.56199 0.65651 0.78799 1.21973 1.39286 1.46405 1.71083 2.11101 2.20945 2.60539 3.47733 3.65874 3.75136 3.95221 4.21232 4.28027 4.29446 4.32238 4.49435 4.52444 4.59141 4.62990 4.80048 4.85840 4.90433 4.93089 4.99650 5.00514 5.02302 5.05691 5.11845 5.23935 5.30229 5.36396 5.39334 5.48471 5.54333 5.61966 5.71468 5.77991 5.91346 6.22615 6.36521 6.60380 6.72580 6.79049 7.32057 8.20458 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024382 B = 0.003885 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.125717 B = 7205.103107 C = 7961.969432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.102 4.102 5 C -0.096 4.096 6 H 0.126 0.874 7 C -0.140 4.140 8 C 0.498 3.502 9 O -0.570 6.570 10 N -0.658 5.658 11 C 0.165 3.835 12 C -0.235 4.235 13 C -0.066 4.066 14 C -0.261 4.261 15 C 0.079 3.921 16 C -0.487 4.487 17 H 0.043 0.957 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.976 3.024 21 H -0.247 1.247 22 H -0.281 1.281 23 H -0.256 1.256 24 C -0.223 4.223 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.425 0.575 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.293 0.707 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.695 8.058 -8.039 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.117 4.117 6 H 0.143 0.857 7 C -0.198 4.198 8 C 0.287 3.713 9 O -0.448 6.448 10 N -0.304 5.304 11 C 0.071 3.929 12 C -0.256 4.256 13 C -0.084 4.084 14 C -0.280 4.280 15 C 0.076 3.924 16 C -0.517 4.517 17 H 0.061 0.939 18 C -0.172 4.172 19 N -0.488 5.488 20 Si 0.799 3.201 21 H -0.172 1.172 22 H -0.208 1.208 23 H -0.180 1.180 24 C -0.245 4.245 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.264 0.736 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.126 7.136 -7.891 22.765 hybrid contribution 0.749 -0.403 0.214 0.877 sum -19.377 6.734 -7.677 21.903 Atomic orbital electron populations 1.21746 0.94620 1.01873 1.02342 1.21561 0.96800 0.97044 1.01466 1.21629 0.92516 0.97094 1.03442 1.21408 0.96821 0.94153 1.01592 1.21384 0.87385 0.99815 1.03106 0.85670 1.21857 1.03792 1.00504 0.93610 1.21876 0.92023 0.82830 0.74541 1.90763 1.71332 1.33403 1.49269 1.43428 1.04115 1.10084 1.72770 1.17678 0.82820 0.96308 0.96065 1.20688 0.93837 1.03192 1.07847 1.20893 0.94125 0.96962 0.96458 1.21191 0.98574 0.99035 1.09217 1.17777 0.92208 0.91806 0.90569 1.19442 1.01689 1.19802 1.10801 0.93864 1.26897 0.94744 0.92715 1.02853 1.69690 1.10441 1.30139 1.38531 0.85370 0.78815 0.78139 0.77744 1.17166 1.20763 1.18031 1.21079 0.93709 1.02354 1.07352 0.92778 0.92255 0.91946 0.92677 0.93115 0.90734 0.89900 0.93178 0.93732 0.93551 0.88437 0.90461 0.73648 0.83526 0.83979 0.88129 0.89635 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.13 -2.14 5.93 30.59 0.18 -1.96 16 3 C -0.11 -1.67 4.97 30.59 0.15 -1.52 16 4 C -0.10 -2.32 4.03 30.59 0.12 -2.20 16 5 C -0.10 -1.98 2.72 -11.54 -0.03 -2.01 16 6 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.14 -2.03 8.85 71.98 0.64 -1.40 16 8 C 0.50 16.57 6.99 87.66 0.61 17.19 16 9 O -0.57 -26.21 13.37 -3.05 -0.04 -26.25 16 10 N -0.66 -20.40 5.19 -303.64 -1.58 -21.98 16 11 C 0.17 6.83 6.29 38.10 0.24 7.07 16 12 C -0.23 -8.53 9.97 22.58 0.23 -8.30 16 13 C -0.07 -2.60 10.02 22.20 0.22 -2.38 16 14 C -0.26 -12.68 6.99 22.75 0.16 -12.52 16 15 C 0.08 4.43 5.13 -21.31 -0.11 4.32 16 16 C -0.49 -30.24 9.60 23.46 0.23 -30.02 16 17 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 18 C 0.04 2.35 5.47 85.25 0.47 2.82 16 19 N -0.86 -50.86 13.93 21.82 0.30 -50.55 16 20 Si 0.98 45.91 24.40 68.60 1.67 47.59 16 21 H -0.25 -10.52 6.67 99.48 0.66 -9.86 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.26 -12.44 6.66 99.48 0.66 -11.78 16 24 C -0.22 -11.73 8.43 22.85 0.19 -11.53 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.98 6.57 -2.39 -0.02 0.96 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.25 7.95 -2.39 -0.02 1.23 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.90 6.57 -2.39 -0.02 0.88 16 36 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 37 H 0.42 8.75 8.39 -92.71 -0.78 7.97 16 38 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.10 4.83 4.40 -2.91 -0.01 4.81 16 41 H 0.29 15.48 8.30 -92.71 -0.77 14.72 16 42 H 0.09 5.13 6.23 -2.91 -0.02 5.11 16 Total: -1.00 -76.16 336.16 4.51 -71.65 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.14 Total: 23.13 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 4.01 Total: -43.59 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.27 Total: -72.53 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.25 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.59 kcal Total: -76.16 4.51 -71.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313514563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.415 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds