Wall clock time and date at job start Mon Mar 30 2020 02:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38356 * 119.85557 * 269.72925 * 3 2 1 5 5 C 1.37960 * 120.14369 * 179.72062 * 4 3 2 6 6 C 1.39577 * 119.85443 * 0.54931 * 5 4 3 7 7 C 1.47841 * 120.14239 * 179.70527 * 6 5 4 8 8 O 1.21556 * 119.99579 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00445 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00293 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46935 * 299.99961 * 11 10 9 13 13 C 1.53000 * 109.46969 * 59.99613 * 11 10 9 14 14 C 1.50697 * 109.46860 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00386 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00001 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99819 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00499 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47094 * 89.99388 * 18 16 14 20 20 H 1.48496 * 109.47518 * 210.00031 * 18 16 14 21 21 H 1.48504 * 109.46816 * 330.00283 * 18 16 14 22 22 C 1.39580 * 119.70869 * 359.72289 * 6 5 4 23 23 C 1.37954 * 119.85419 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08004 * 119.92358 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.06803 * 180.25007 * 5 4 3 31 31 H 0.97001 * 119.99753 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.46925 * 300.00133 * 10 9 7 33 33 H 1.08996 * 109.46809 * 59.99892 * 10 9 7 34 34 H 1.08991 * 109.47352 * 59.99965 * 12 11 10 35 35 H 1.09006 * 109.47026 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46784 * 299.99848 * 12 11 10 37 37 H 1.09003 * 109.47207 * 60.00443 * 13 11 10 38 38 H 1.09006 * 109.46531 * 179.97438 * 13 11 10 39 39 H 1.08991 * 109.47339 * 300.00048 * 13 11 10 40 40 H 0.97000 * 120.00384 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.07192 * 179.97438 * 22 6 5 42 42 H 1.07994 * 119.93054 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0682 -1.1999 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 3.6518 5.9981 1.0528 9 7 3.6733 6.0607 -1.1671 10 6 4.1626 7.4416 -1.1671 11 6 4.3329 7.9224 -2.6096 12 6 5.3400 7.0244 -3.3309 13 6 2.9850 7.8588 -3.3307 14 6 4.8368 9.3426 -2.6095 15 1 5.0172 9.8516 -1.6742 16 6 5.0666 9.9926 -3.8035 17 7 4.8465 9.3730 -4.9425 18 14 5.6906 11.7533 -3.8036 19 1 7.1756 11.7522 -3.8041 20 1 5.1956 12.4539 -5.0157 21 1 5.1967 12.4535 -2.5907 22 6 2.7218 3.3707 1.2071 23 6 2.2624 2.0699 1.2001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0907 1.5541 -2.1332 30 1 2.9010 3.8764 -2.1443 31 1 3.5109 5.6037 -2.0071 32 1 3.4453 8.0812 -0.6528 33 1 5.1231 7.4867 -0.6537 34 1 4.9760 5.9971 -3.3309 35 1 5.4616 7.3672 -4.3585 36 1 6.3003 7.0697 -2.8171 37 1 2.2675 8.4986 -2.8169 38 1 3.1063 8.2018 -4.3583 39 1 2.6210 6.8315 -3.3307 40 1 5.0085 9.8301 -5.7826 41 1 2.9011 3.8763 2.1445 42 1 2.0816 1.5573 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315321969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:37 Heat of formation + Delta-G solvation = -34.053151 kcal Electronic energy + Delta-G solvation = -20872.075260 eV Core-core repulsion = 17816.124836 eV Total energy + Delta-G solvation = -3055.950424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04495 -38.48957 -36.34691 -34.26775 -33.32486 -31.22792 -30.73780 -29.60606 -25.84498 -25.73826 -25.20038 -24.06175 -22.63060 -21.69042 -20.00710 -18.86392 -17.76990 -16.08032 -15.73733 -15.56829 -14.93891 -14.75760 -14.72871 -14.40859 -13.82030 -13.73838 -13.48528 -13.16094 -12.91743 -12.85086 -12.49483 -12.18274 -11.91538 -11.48082 -11.38516 -11.24627 -11.20409 -10.97239 -10.87138 -10.69892 -10.39707 -10.20916 -9.64570 -9.63433 -9.26984 -9.05368 -8.82730 -8.79972 -8.44288 -8.29586 -6.02721 -4.12746 0.87106 1.31603 3.08224 3.28257 3.35207 3.39075 3.71720 3.95958 4.39936 4.50612 4.61287 4.86506 4.92702 5.06872 5.12478 5.24110 5.28320 5.29869 5.41000 5.61262 5.70245 5.79301 5.91849 5.94263 6.19295 6.26176 6.32173 6.39405 6.44374 6.50310 6.76832 6.80854 6.82191 6.93676 7.01004 7.01444 7.34413 7.54532 7.68798 7.99936 8.03603 8.14596 8.37684 8.67351 8.87994 9.53102 10.98785 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.003406 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.782986 B = 8217.922738 C = 8669.415250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.066 4.066 4 C -0.126 4.126 5 C -0.083 4.083 6 C -0.130 4.130 7 C 0.545 3.455 8 O -0.550 6.550 9 N -0.710 5.710 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.060 4.060 23 C -0.129 4.129 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.005 0.995 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.005 0.995 40 H 0.260 0.740 41 H 0.135 0.865 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -17.567 5.722 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.066 4.066 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.133 4.133 7 C 0.332 3.668 8 O -0.430 6.430 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.079 4.079 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.234 0.766 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.153 0.847 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.538 -17.071 6.243 19.317 hybrid contribution 0.299 0.797 -0.512 0.993 sum -6.239 -16.275 5.731 18.348 Atomic orbital electron populations 1.21752 0.94545 1.01722 1.02451 1.20588 0.96317 0.92530 1.02997 1.20083 0.97177 0.96149 0.93232 1.20958 1.00961 0.94725 0.97740 1.21385 0.96738 0.94717 0.97372 1.20148 1.03949 0.94912 0.94296 1.18300 0.78336 0.85734 0.84446 1.90729 1.53132 1.67811 1.31342 1.46263 1.65739 1.16396 1.07665 1.21763 0.97904 0.78750 1.00716 1.18361 0.93138 0.95182 0.87816 1.21839 0.97930 0.94807 1.04315 1.21835 0.96749 0.95982 1.04314 1.20985 1.44026 0.96736 0.92689 0.92396 1.24880 0.95168 0.97955 0.95509 1.69801 1.48800 1.36690 0.97200 0.86563 0.79035 0.84702 0.77528 1.20705 1.21263 1.19898 1.21270 0.94926 0.93848 0.97896 1.20984 1.01224 0.94785 0.97663 0.92393 0.92455 0.92372 0.90915 0.90856 0.85588 0.85441 0.76644 0.92541 0.92547 0.97595 0.89521 0.95373 0.95374 0.89521 0.97590 0.92999 0.84739 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 2 C -0.09 -0.63 6.06 -27.89 -0.17 -0.80 16 3 C -0.07 -0.66 5.14 -104.53 -0.54 -1.20 16 4 C -0.13 -1.34 9.68 -39.64 -0.38 -1.72 16 5 C -0.08 -1.05 9.54 -39.18 -0.37 -1.43 16 6 C -0.13 -1.95 5.87 -104.97 -0.62 -2.57 16 7 C 0.55 10.14 7.77 -12.33 -0.10 10.04 16 8 O -0.55 -12.01 16.35 5.32 0.09 -11.92 16 9 N -0.71 -13.18 4.91 -61.25 -0.30 -13.48 16 10 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 11 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 12 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.06 -0.81 9.60 -39.19 -0.38 -1.19 16 23 C -0.13 -1.38 9.68 -39.64 -0.38 -1.77 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.48 6.41 -52.48 -0.34 1.15 16 31 H 0.40 6.63 4.20 -40.82 -0.17 6.46 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -28.93 338.47 -8.49 -37.42 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.44 Total: 4.69 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.43 Total: -14.47 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.22 Total: -36.56 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.93 -8.49 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315321969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.367 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds