Wall clock time and date at job start Mon Mar 30 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38356 * 119.85557 * 269.72925 * 3 2 1 5 5 C 1.37960 * 120.14369 * 179.72062 * 4 3 2 6 6 C 1.39577 * 119.85443 * 0.54931 * 5 4 3 7 7 C 1.47841 * 120.14239 * 179.70527 * 6 5 4 8 8 O 1.21556 * 119.99579 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00445 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00293 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46935 * 299.99961 * 11 10 9 13 13 C 1.53000 * 109.46969 * 59.99613 * 11 10 9 14 14 C 1.50697 * 109.46860 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00386 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00001 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99819 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00499 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47094 * 89.99388 * 18 16 14 20 20 H 1.48496 * 109.47518 * 210.00031 * 18 16 14 21 21 H 1.48504 * 109.46816 * 330.00283 * 18 16 14 22 22 C 1.39580 * 119.70869 * 359.72289 * 6 5 4 23 23 C 1.37954 * 119.85419 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08004 * 119.92358 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.06803 * 180.25007 * 5 4 3 31 31 H 0.97001 * 119.99753 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.46925 * 300.00133 * 10 9 7 33 33 H 1.08996 * 109.46809 * 59.99892 * 10 9 7 34 34 H 1.08991 * 109.47352 * 59.99965 * 12 11 10 35 35 H 1.09006 * 109.47026 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46784 * 299.99848 * 12 11 10 37 37 H 1.09003 * 109.47207 * 60.00443 * 13 11 10 38 38 H 1.09006 * 109.46531 * 179.97438 * 13 11 10 39 39 H 1.08991 * 109.47339 * 300.00048 * 13 11 10 40 40 H 0.97000 * 120.00384 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.07192 * 179.97438 * 22 6 5 42 42 H 1.07994 * 119.93054 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0682 -1.1999 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 3.6518 5.9981 1.0528 9 7 3.6733 6.0607 -1.1671 10 6 4.1626 7.4416 -1.1671 11 6 4.3329 7.9224 -2.6096 12 6 5.3400 7.0244 -3.3309 13 6 2.9850 7.8588 -3.3307 14 6 4.8368 9.3426 -2.6095 15 1 5.0172 9.8516 -1.6742 16 6 5.0666 9.9926 -3.8035 17 7 4.8465 9.3730 -4.9425 18 14 5.6906 11.7533 -3.8036 19 1 7.1756 11.7522 -3.8041 20 1 5.1956 12.4539 -5.0157 21 1 5.1967 12.4535 -2.5907 22 6 2.7218 3.3707 1.2071 23 6 2.2624 2.0699 1.2001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0907 1.5541 -2.1332 30 1 2.9010 3.8764 -2.1443 31 1 3.5109 5.6037 -2.0071 32 1 3.4453 8.0812 -0.6528 33 1 5.1231 7.4867 -0.6537 34 1 4.9760 5.9971 -3.3309 35 1 5.4616 7.3672 -4.3585 36 1 6.3003 7.0697 -2.8171 37 1 2.2675 8.4986 -2.8169 38 1 3.1063 8.2018 -4.3583 39 1 2.6210 6.8315 -3.3307 40 1 5.0085 9.8301 -5.7826 41 1 2.9011 3.8763 2.1445 42 1 2.0816 1.5573 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315321969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:36 Heat of formation + Delta-G solvation = -48.938351 kcal Electronic energy + Delta-G solvation = -20872.720731 eV Core-core repulsion = 17816.124836 eV Total energy + Delta-G solvation = -3056.595895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28151 -39.69095 -38.11375 -35.25828 -34.85666 -32.85300 -31.84640 -30.55206 -27.59133 -27.53864 -26.94854 -25.12448 -23.54945 -22.68946 -21.21790 -20.65950 -19.12978 -17.83409 -17.10845 -16.71806 -16.36966 -16.30507 -15.93117 -15.69450 -14.85643 -14.76581 -14.66559 -14.49887 -14.24747 -14.18590 -13.92757 -13.37855 -13.21537 -13.11658 -12.74773 -12.64502 -12.61044 -12.27342 -12.18582 -12.15054 -11.93872 -11.66215 -11.51487 -11.33577 -10.95809 -10.72005 -10.41562 -10.09660 -9.95606 -9.64228 -8.03666 -6.19490 -0.14790 0.41643 1.42077 1.44824 1.53179 1.85403 2.24536 2.48078 2.87606 3.19940 3.67678 3.82703 3.93651 4.02476 4.28752 4.39738 4.43195 4.47239 4.55859 4.58863 4.65371 4.69278 4.94043 4.97193 5.02275 5.02742 5.09254 5.14053 5.15692 5.16399 5.30714 5.35415 5.41761 5.44867 5.53685 5.63509 5.64586 5.65914 5.95536 6.12399 6.18577 6.41481 6.59527 6.84043 7.21275 7.48200 8.95511 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.003406 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.782986 B = 8217.922738 C = 8669.415250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.056 4.056 4 C -0.125 4.125 5 C -0.085 4.085 6 C -0.157 4.157 7 C 0.544 3.456 8 O -0.592 6.592 9 N -0.704 5.704 10 C 0.146 3.854 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.279 1.279 20 H -0.281 1.281 21 H -0.277 1.277 22 C -0.073 4.073 23 C -0.126 4.126 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.136 0.864 31 H 0.408 0.592 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -20.152 5.260 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.056 4.056 4 C -0.143 4.143 5 C -0.104 4.104 6 C -0.160 4.160 7 C 0.333 3.667 8 O -0.475 6.475 9 N -0.355 5.355 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.569 4.569 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.773 3.227 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.202 1.202 22 C -0.092 4.092 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.172 0.828 30 H 0.153 0.847 31 H 0.246 0.754 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.398 -19.680 5.761 21.800 hybrid contribution 0.521 1.488 -0.340 1.612 sum -6.878 -18.192 5.421 20.190 Atomic orbital electron populations 1.21754 0.94040 1.02655 1.02001 1.20675 0.96558 0.90579 1.04450 1.20507 0.95069 0.97414 0.92615 1.21305 0.99803 0.93853 0.99299 1.21511 0.96650 0.95639 0.96618 1.19912 1.06956 0.93091 0.96083 1.18907 0.77197 0.87069 0.83494 1.90695 1.54955 1.69163 1.32655 1.46062 1.65808 1.15170 1.08488 1.21341 0.96721 0.80345 0.99326 1.18355 0.93633 0.94133 0.88742 1.21684 0.97420 0.96286 1.02525 1.21680 0.96136 0.97560 1.02521 1.21262 1.44784 0.98486 0.92361 0.93757 1.25449 0.95386 1.00936 0.95312 1.69898 1.48881 1.37595 0.97357 0.85745 0.78501 0.81106 0.77371 1.20454 1.20690 1.20160 1.21324 0.95781 0.95108 0.96997 1.21257 1.00164 0.93612 0.99361 0.92843 0.92964 0.90815 0.89578 0.89415 0.82779 0.84671 0.75391 0.94225 0.94202 0.94575 0.91610 0.96286 0.96292 0.91612 0.94575 0.92942 0.85891 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.09 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.06 -0.93 5.14 -19.81 -0.10 -1.03 16 4 C -0.12 -2.24 9.68 22.23 0.22 -2.03 16 5 C -0.09 -1.99 9.54 22.53 0.21 -1.78 16 6 C -0.16 -4.65 5.87 -20.09 -0.12 -4.77 16 7 C 0.54 20.58 7.77 86.79 0.67 21.25 16 8 O -0.59 -26.84 16.35 -3.89 -0.06 -26.91 16 9 N -0.70 -26.16 4.91 -465.97 -2.29 -28.45 16 10 C 0.15 6.50 4.50 86.38 0.39 6.89 16 11 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 12 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 13 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 14 C -0.53 -28.44 8.01 25.60 0.21 -28.23 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 16 C 0.03 1.54 5.15 84.65 0.44 1.97 16 17 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 18 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.07 -1.92 9.60 22.53 0.22 -1.71 16 23 C -0.13 -2.42 9.68 22.23 0.22 -2.20 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.14 2.84 6.41 -2.91 -0.02 2.82 16 31 H 0.41 13.14 4.20 -92.71 -0.39 12.75 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 35 H 0.07 3.26 6.07 -2.38 -0.01 3.24 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 3.26 6.07 -2.38 -0.01 3.24 16 39 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 40 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 41 H 0.12 3.43 7.65 -2.91 -0.02 3.41 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -63.39 338.47 4.87 -58.52 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.61 Total: 20.12 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.38 Total: -20.40 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.09 Total: -76.23 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.06 Total: -26.91 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -63.39 4.87 -58.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315321969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.584 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds