Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46956 * 2 1 4 4 C 1.37984 * 120.07735 * 101.28413 * 3 2 1 5 5 C 1.38332 * 120.14244 * 179.74241 * 4 3 2 6 6 C 1.38379 * 120.29882 * 0.28064 * 5 4 3 7 7 C 1.37939 * 120.14334 * 359.97438 * 6 5 4 8 8 C 1.39565 * 120.07369 * 281.55719 * 3 2 1 9 9 C 1.47849 * 120.14311 * 0.02562 * 8 3 2 10 10 O 1.21550 * 119.99676 * 354.83655 * 9 8 3 11 11 N 1.34770 * 119.99882 * 174.84127 * 9 8 3 12 12 C 1.46501 * 119.99812 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46964 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47296 * 299.99575 * 13 12 11 15 15 C 1.53000 * 109.47369 * 59.99808 * 13 12 11 16 16 C 1.50707 * 109.47105 * 179.97438 * 13 12 11 17 17 H 1.07993 * 119.99631 * 1.35878 * 16 13 12 18 18 C 1.37875 * 119.99820 * 181.35461 * 16 13 12 19 19 N 1.31514 * 120.00034 * 192.09631 * 18 16 13 20 20 Si 1.86803 * 120.00157 * 12.09849 * 18 16 13 21 21 H 1.48494 * 109.46936 * 84.62314 * 20 18 16 22 22 H 1.48504 * 109.47079 * 204.62283 * 20 18 16 23 23 H 1.48493 * 109.47243 * 324.62104 * 20 18 16 24 24 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46883 * 300.00177 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00522 * 1 2 3 27 27 H 1.08996 * 109.47623 * 239.99849 * 2 1 3 28 28 H 1.09004 * 109.47206 * 119.99477 * 2 1 3 29 29 H 1.07992 * 119.92115 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.84889 * 180.25279 * 5 4 3 31 31 H 1.07996 * 119.93169 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.07100 * 180.02562 * 7 6 5 33 33 H 0.97006 * 120.00329 * 359.97438 * 11 9 8 34 34 H 1.09007 * 109.47105 * 299.99037 * 12 11 9 35 35 H 1.08994 * 109.47863 * 59.99658 * 12 11 9 36 36 H 1.08996 * 109.46884 * 68.94795 * 14 13 12 37 37 H 1.08998 * 109.47561 * 188.94451 * 14 13 12 38 38 H 1.09001 * 109.46919 * 308.94675 * 14 13 12 39 39 H 1.08998 * 109.47086 * 59.99839 * 15 13 12 40 40 H 1.09000 * 109.47613 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47298 * 299.99942 * 15 13 12 42 42 H 0.97000 * 120.00492 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4831 1.9949 1.1710 5 6 2.9494 3.2973 1.1715 6 6 2.9619 4.0348 0.0007 7 6 2.5091 3.4746 -1.1757 8 6 2.0373 2.1609 -1.1833 9 6 1.5496 1.5543 -2.4404 10 8 1.2315 0.3815 -2.4658 11 7 1.4578 2.3019 -3.5580 12 6 0.9740 1.7010 -4.8034 13 6 0.9667 2.7575 -5.9101 14 6 0.0446 3.9105 -5.5084 15 6 2.3864 3.2885 -6.1178 16 6 0.4696 2.1392 -7.1915 17 1 0.1665 1.1028 -7.2089 18 6 0.4018 2.8968 -8.3414 19 7 -0.2461 2.4416 -9.3915 20 14 1.2302 4.5698 -8.4080 21 1 2.6615 4.3995 -8.7651 22 1 0.5616 5.4128 -9.4315 23 1 1.1260 5.2269 -7.0805 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.4760 1.4247 2.0880 30 1 3.3049 3.7406 2.0899 31 1 3.3268 5.0512 0.0079 32 1 2.5198 4.0511 -2.0889 33 1 1.7114 3.2380 -3.5376 34 1 1.6308 0.8793 -5.0895 35 1 -0.0375 1.3231 -4.6557 36 1 0.4878 4.4569 -4.6760 37 1 -0.0864 4.5832 -6.3559 38 1 -0.9245 3.5126 -5.2071 39 1 3.0433 2.4671 -6.4040 40 1 2.3811 4.0414 -6.9059 41 1 2.7464 3.7356 -5.1912 42 1 -0.2942 2.9747 -10.2004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315595938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = -5.291515 kcal Electronic energy + Delta-G solvation = -21596.553623 eV Core-core repulsion = 18541.850397 eV Total energy + Delta-G solvation = -3054.703226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34789 -38.35845 -36.72528 -34.28870 -33.12244 -31.75569 -30.90510 -29.45651 -26.43932 -26.17098 -25.00830 -23.85669 -23.32670 -21.11309 -20.23905 -19.16852 -17.63758 -16.20894 -15.92479 -15.70288 -15.37691 -14.98973 -14.74076 -14.64493 -13.84813 -13.67639 -13.37459 -13.16577 -12.91955 -12.80085 -12.53996 -12.28121 -12.20586 -12.10622 -11.72003 -11.64935 -11.37779 -10.97787 -10.76139 -10.44677 -10.31464 -10.15843 -10.06072 -9.32983 -9.11219 -9.08698 -8.84522 -8.70939 -8.52980 -8.43700 -6.15540 -4.13879 0.83508 1.23536 3.03927 3.22151 3.29169 3.37192 3.58528 3.85889 4.33938 4.64755 4.71882 4.75834 4.94226 5.15241 5.17041 5.34487 5.40272 5.55354 5.58857 5.69466 5.79104 5.91794 6.01133 6.02395 6.03798 6.20006 6.21568 6.29473 6.32789 6.40829 6.45257 6.50254 6.58362 6.62769 6.67130 6.77652 6.81003 6.95513 7.19229 7.40480 7.69864 7.90615 8.42969 8.57207 8.89131 9.47670 10.97561 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.004564 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.671140 B = 6133.420386 C = 6857.030120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.021 4.021 4 C -0.132 4.132 5 C -0.097 4.097 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.131 4.131 9 C 0.547 3.453 10 O -0.534 6.534 11 N -0.717 5.717 12 C 0.143 3.857 13 C 0.027 3.973 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.512 4.512 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.892 5.892 20 Si 0.883 3.117 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.247 1.247 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.028 0.972 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 3.323 20.142 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.022 4.022 4 C -0.150 4.150 5 C -0.115 4.115 6 C -0.154 4.154 7 C -0.104 4.104 8 C -0.134 4.134 9 C 0.334 3.666 10 O -0.413 6.413 11 N -0.368 5.368 12 C 0.020 3.980 13 C 0.026 3.974 14 C -0.203 4.203 15 C -0.203 4.203 16 C -0.550 4.550 17 H 0.095 0.905 18 C -0.127 4.127 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.214 1.214 22 H -0.233 1.233 23 H -0.173 1.173 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.736 2.498 19.877 20.839 hybrid contribution 0.670 1.555 -0.255 1.713 sum 6.406 4.053 19.622 21.036 Atomic orbital electron populations 1.21598 0.94412 1.01663 1.01448 1.20817 0.96836 0.91836 1.03581 1.20099 0.94229 0.96355 0.91545 1.21052 1.00776 0.95584 0.97588 1.21295 0.97813 0.94291 0.98135 1.21059 1.01433 1.00262 0.92612 1.21358 0.96478 0.93956 0.98563 1.19981 1.04264 0.94889 0.94235 1.18243 0.78609 0.86355 0.83390 1.90692 1.49670 1.15812 1.85158 1.46286 1.65943 1.14055 1.10505 1.21531 0.98963 0.96425 0.81046 1.18737 0.91841 0.92245 0.94574 1.22364 0.99735 0.98835 0.99339 1.22321 0.99228 1.00256 0.98503 1.20714 1.43906 0.99235 0.91112 0.90507 1.24972 0.94393 0.97728 0.95645 1.69932 1.40008 1.38866 1.04092 0.87354 0.78928 0.84932 0.77223 1.21356 1.23336 1.17260 0.92620 0.93920 0.91843 0.87598 0.92299 0.85648 0.85852 0.85632 0.85659 0.76950 0.91811 0.91722 0.96036 0.92227 0.93338 0.92694 0.94076 0.95321 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.42 37.16 0.35 -1.37 16 2 C -0.09 -1.20 5.34 -27.88 -0.15 -1.35 16 3 C -0.02 -0.27 5.18 -104.22 -0.54 -0.81 16 4 C -0.13 -1.36 9.66 -39.64 -0.38 -1.75 16 5 C -0.10 -0.89 10.04 -39.50 -0.40 -1.29 16 6 C -0.14 -1.32 10.03 -39.64 -0.40 -1.72 16 7 C -0.08 -0.99 9.53 -39.19 -0.37 -1.36 16 8 C -0.13 -1.82 5.86 -104.96 -0.62 -2.43 16 9 C 0.55 9.10 7.35 -12.33 -0.09 9.01 16 10 O -0.53 -10.13 11.82 5.32 0.06 -10.06 16 11 N -0.72 -11.89 4.95 -61.25 -0.30 -12.19 16 12 C 0.14 2.83 4.49 -4.04 -0.02 2.81 16 13 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 14 C -0.15 -2.94 7.52 37.16 0.28 -2.66 16 15 C -0.15 -2.94 7.58 37.16 0.28 -2.65 16 16 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.08 2.08 5.35 -17.82 -0.10 1.98 16 19 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 20 Si 0.88 20.88 22.75 -169.99 -3.87 17.01 16 21 H -0.29 -6.74 7.07 56.52 0.40 -6.34 16 22 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.25 -5.28 4.61 56.52 0.26 -5.01 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.97 6.48 -51.93 -0.34 0.63 16 27 H 0.11 1.60 5.90 -51.93 -0.31 1.29 16 28 H 0.06 0.62 7.99 -51.93 -0.41 0.20 16 29 H 0.13 1.02 8.02 -52.49 -0.42 0.60 16 30 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.29 6.44 -52.49 -0.34 0.95 16 33 H 0.39 5.76 4.32 -40.82 -0.18 5.59 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.36 7.12 -51.93 -0.37 -0.01 16 37 H 0.06 1.28 4.08 -51.93 -0.21 1.07 16 38 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.87 2.36 -51.93 -0.12 0.75 16 41 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -30.05 319.56 -7.17 -37.22 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.13 Total: 6.04 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.52 Total: -17.02 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.47 Total: -38.01 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.87 Total: 17.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.05 -7.17 -37.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315595938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.933 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds