Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46956 * 2 1 4 4 C 1.37984 * 120.07735 * 101.28413 * 3 2 1 5 5 C 1.38332 * 120.14244 * 179.74241 * 4 3 2 6 6 C 1.38379 * 120.29882 * 0.28064 * 5 4 3 7 7 C 1.37939 * 120.14334 * 359.97438 * 6 5 4 8 8 C 1.39565 * 120.07369 * 281.55719 * 3 2 1 9 9 C 1.47849 * 120.14311 * 0.02562 * 8 3 2 10 10 O 1.21550 * 119.99676 * 354.83655 * 9 8 3 11 11 N 1.34770 * 119.99882 * 174.84127 * 9 8 3 12 12 C 1.46501 * 119.99812 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46964 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47296 * 299.99575 * 13 12 11 15 15 C 1.53000 * 109.47369 * 59.99808 * 13 12 11 16 16 C 1.50707 * 109.47105 * 179.97438 * 13 12 11 17 17 H 1.07993 * 119.99631 * 1.35878 * 16 13 12 18 18 C 1.37875 * 119.99820 * 181.35461 * 16 13 12 19 19 N 1.31514 * 120.00034 * 192.09631 * 18 16 13 20 20 Si 1.86803 * 120.00157 * 12.09849 * 18 16 13 21 21 H 1.48494 * 109.46936 * 84.62314 * 20 18 16 22 22 H 1.48504 * 109.47079 * 204.62283 * 20 18 16 23 23 H 1.48493 * 109.47243 * 324.62104 * 20 18 16 24 24 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46883 * 300.00177 * 1 2 3 26 26 H 1.09004 * 109.47206 * 60.00522 * 1 2 3 27 27 H 1.08996 * 109.47623 * 239.99849 * 2 1 3 28 28 H 1.09004 * 109.47206 * 119.99477 * 2 1 3 29 29 H 1.07992 * 119.92115 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.84889 * 180.25279 * 5 4 3 31 31 H 1.07996 * 119.93169 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.07100 * 180.02562 * 7 6 5 33 33 H 0.97006 * 120.00329 * 359.97438 * 11 9 8 34 34 H 1.09007 * 109.47105 * 299.99037 * 12 11 9 35 35 H 1.08994 * 109.47863 * 59.99658 * 12 11 9 36 36 H 1.08996 * 109.46884 * 68.94795 * 14 13 12 37 37 H 1.08998 * 109.47561 * 188.94451 * 14 13 12 38 38 H 1.09001 * 109.46919 * 308.94675 * 14 13 12 39 39 H 1.08998 * 109.47086 * 59.99839 * 15 13 12 40 40 H 1.09000 * 109.47613 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47298 * 299.99942 * 15 13 12 42 42 H 0.97000 * 120.00492 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4831 1.9949 1.1710 5 6 2.9494 3.2973 1.1715 6 6 2.9619 4.0348 0.0007 7 6 2.5091 3.4746 -1.1757 8 6 2.0373 2.1609 -1.1833 9 6 1.5496 1.5543 -2.4404 10 8 1.2315 0.3815 -2.4658 11 7 1.4578 2.3019 -3.5580 12 6 0.9740 1.7010 -4.8034 13 6 0.9667 2.7575 -5.9101 14 6 0.0446 3.9105 -5.5084 15 6 2.3864 3.2885 -6.1178 16 6 0.4696 2.1392 -7.1915 17 1 0.1665 1.1028 -7.2089 18 6 0.4018 2.8968 -8.3414 19 7 -0.2461 2.4416 -9.3915 20 14 1.2302 4.5698 -8.4080 21 1 2.6615 4.3995 -8.7651 22 1 0.5616 5.4128 -9.4315 23 1 1.1260 5.2269 -7.0805 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.4760 1.4247 2.0880 30 1 3.3049 3.7406 2.0899 31 1 3.3268 5.0512 0.0079 32 1 2.5198 4.0511 -2.0889 33 1 1.7114 3.2380 -3.5376 34 1 1.6308 0.8793 -5.0895 35 1 -0.0375 1.3231 -4.6557 36 1 0.4878 4.4569 -4.6760 37 1 -0.0864 4.5832 -6.3559 38 1 -0.9245 3.5126 -5.2071 39 1 3.0433 2.4671 -6.4040 40 1 2.3811 4.0414 -6.9059 41 1 2.7464 3.7356 -5.1912 42 1 -0.2942 2.9747 -10.2004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315595938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = -24.210874 kcal Electronic energy + Delta-G solvation = -21597.374028 eV Core-core repulsion = 18541.850397 eV Total energy + Delta-G solvation = -3055.523631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46285 -39.52336 -38.28169 -35.50372 -34.49712 -33.52105 -31.97506 -30.35238 -28.05491 -27.68369 -26.97106 -24.96190 -24.23743 -22.13778 -21.44688 -20.84313 -18.84496 -18.06926 -17.21439 -16.91606 -16.64326 -16.35595 -15.97377 -15.78752 -15.06072 -14.86314 -14.79497 -14.56119 -14.46932 -14.04745 -13.96054 -13.80673 -13.77549 -13.11100 -12.96408 -12.62977 -12.47149 -12.38949 -12.20748 -11.97140 -11.90546 -11.77249 -11.69592 -11.06799 -10.65129 -10.54616 -10.38338 -10.10505 -9.82540 -9.61325 -8.30135 -6.33176 -0.06287 0.44591 1.36305 1.37264 1.50758 1.95149 2.27249 2.34546 2.92221 3.06073 3.76248 3.83184 3.89847 4.07760 4.17001 4.30644 4.36518 4.38630 4.52324 4.57057 4.59593 4.64151 4.73483 4.80529 4.83202 4.90971 4.96087 5.00397 5.03676 5.12707 5.14479 5.26075 5.33119 5.41795 5.45218 5.54210 5.55701 5.69786 5.71654 5.77473 6.01557 6.29109 6.62646 6.72092 7.29073 7.32451 8.87109 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.004564 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.671140 B = 6133.420386 C = 6857.030120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.039 4.039 4 C -0.133 4.133 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.090 4.090 8 C -0.157 4.157 9 C 0.543 3.457 10 O -0.567 6.567 11 N -0.709 5.709 12 C 0.159 3.841 13 C 0.027 3.973 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.517 4.517 17 H 0.026 0.974 18 C 0.016 3.984 19 N -0.948 5.948 20 Si 0.942 3.058 21 H -0.281 1.281 22 H -0.314 1.314 23 H -0.200 1.200 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.408 0.592 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 6.691 23.849 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.040 4.040 4 C -0.151 4.151 5 C -0.105 4.105 6 C -0.151 4.151 7 C -0.109 4.109 8 C -0.160 4.160 9 C 0.333 3.667 10 O -0.449 6.449 11 N -0.361 5.361 12 C 0.036 3.964 13 C 0.025 3.975 14 C -0.201 4.201 15 C -0.202 4.202 16 C -0.555 4.555 17 H 0.045 0.955 18 C -0.181 4.181 19 N -0.587 5.587 20 Si 0.771 3.229 21 H -0.208 1.208 22 H -0.244 1.244 23 H -0.123 1.123 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.246 0.754 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.848 5.880 23.632 25.586 hybrid contribution -0.008 0.374 -1.304 1.356 sum 7.841 6.254 22.328 24.477 Atomic orbital electron populations 1.21541 0.94865 1.01582 1.00669 1.20733 0.96480 0.92539 1.03165 1.20212 0.95265 0.96157 0.92367 1.21342 0.99929 0.96451 0.97348 1.21761 0.95767 0.93534 0.99396 1.21459 1.00162 1.01587 0.91845 1.21561 0.96229 0.92919 1.00144 1.19820 1.06846 0.96404 0.92888 1.18832 0.77711 0.85975 0.84229 1.90687 1.50964 1.17438 1.85762 1.46014 1.66187 1.14602 1.09315 1.21029 0.97361 0.95651 0.82404 1.18667 0.93472 0.93006 0.92306 1.22280 0.99317 0.98054 1.00438 1.22252 0.97437 1.00025 1.00503 1.21019 1.43228 0.97359 0.93908 0.95521 1.25878 0.94877 1.02405 0.94972 1.70101 1.42442 1.41098 1.05096 0.86392 0.77434 0.79896 0.79149 1.20830 1.24397 1.12321 0.92428 0.92091 0.94983 0.90767 0.89856 0.83308 0.82362 0.82574 0.84420 0.75404 0.93885 0.94110 0.91688 0.93141 0.94139 0.93502 0.94559 0.90916 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.42 71.98 0.68 -2.66 16 2 C -0.09 -2.32 5.34 29.85 0.16 -2.16 16 3 C -0.04 -0.93 5.18 -19.60 -0.10 -1.03 16 4 C -0.13 -2.24 9.66 22.23 0.21 -2.02 16 5 C -0.09 -1.15 10.04 22.33 0.22 -0.92 16 6 C -0.13 -1.92 10.03 22.23 0.22 -1.69 16 7 C -0.09 -1.77 9.53 22.53 0.21 -1.56 16 8 C -0.16 -4.11 5.86 -20.09 -0.12 -4.23 16 9 C 0.54 18.16 7.35 86.79 0.64 18.80 16 10 O -0.57 -22.62 11.82 -3.87 -0.05 -22.66 16 11 N -0.71 -22.89 4.95 -465.98 -2.31 -25.20 16 12 C 0.16 6.51 4.49 86.38 0.39 6.89 16 13 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 14 C -0.14 -5.47 7.52 71.98 0.54 -4.93 16 15 C -0.15 -5.45 7.58 71.98 0.55 -4.91 16 16 C -0.52 -28.75 8.62 25.60 0.22 -28.53 16 17 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 18 C 0.02 0.90 5.35 84.65 0.45 1.36 16 19 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 20 Si 0.94 42.43 22.75 68.60 1.56 44.00 16 21 H -0.28 -12.39 7.07 99.48 0.70 -11.68 16 22 H -0.31 -14.62 7.11 99.48 0.71 -13.92 16 23 H -0.20 -7.51 4.61 99.48 0.46 -7.05 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.03 1.01 6.48 -2.39 -0.02 0.99 16 27 H 0.07 2.35 5.90 -2.39 -0.01 2.33 16 28 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 29 H 0.15 1.75 8.02 -2.91 -0.02 1.72 16 30 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.14 2.24 6.44 -2.91 -0.02 2.23 16 33 H 0.41 10.66 4.32 -92.70 -0.40 10.26 16 34 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.91 7.12 -2.39 -0.02 1.89 16 37 H 0.05 2.01 4.08 -2.39 -0.01 2.00 16 38 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.41 2.36 -2.39 -0.01 1.40 16 41 H 0.07 2.08 6.86 -2.39 -0.02 2.07 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.05 319.56 4.13 -66.92 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.37 Total: 22.28 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.25 Total: -26.47 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.01 Total: -84.06 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.56 Total: 44.00 kcal Total: -71.05 4.13 -66.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315595938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.706 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds