Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.54755 * 2 1 4 4 C 1.53099 * 109.50508 * 120.10957 * 2 1 3 5 5 O 1.43023 * 109.26047 * 63.08442 * 4 2 1 6 6 C 1.43011 * 113.73582 * 58.66766 * 5 4 2 7 7 C 1.53101 * 109.26203 * 301.33425 * 6 5 4 8 8 N 1.47010 * 109.25665 * 56.84935 * 7 6 5 9 9 C 1.46902 * 110.99758 * 177.60859 * 8 7 6 10 10 C 1.50691 * 109.47317 * 293.63393 * 9 8 7 11 11 C 1.38642 * 119.75014 * 269.73113 * 10 9 8 12 12 C 1.37616 * 120.24508 * 179.71859 * 11 10 9 13 13 C 1.40716 * 119.74843 * 0.57258 * 12 11 10 14 14 C 1.41394 * 120.24503 * 179.68068 * 13 12 11 15 15 H 1.07998 * 120.00119 * 155.30773 * 14 13 12 16 16 C 1.39949 * 119.99914 * 335.31272 * 14 13 12 17 17 N 1.30823 * 119.99958 * 342.22507 * 16 14 13 18 18 Si 1.86803 * 119.99884 * 162.23549 * 16 14 13 19 19 H 1.48495 * 109.47219 * 94.65939 * 18 16 14 20 20 H 1.48498 * 109.46682 * 214.65995 * 18 16 14 21 21 H 1.48499 * 109.47208 * 334.65835 * 18 16 14 22 22 C 1.40714 * 119.51027 * 359.69917 * 13 12 11 23 23 C 1.37623 * 119.74395 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.47413 * 299.89315 * 1 2 3 25 25 H 1.09005 * 109.46852 * 59.88654 * 1 2 3 26 26 H 1.08998 * 109.47883 * 179.88888 * 1 2 3 27 27 H 1.08997 * 109.47176 * 180.10732 * 3 2 1 28 28 H 1.08999 * 109.46939 * 300.11203 * 3 2 1 29 29 H 1.09005 * 109.47108 * 60.10461 * 3 2 1 30 30 H 1.08994 * 109.50946 * 183.01611 * 4 2 1 31 31 H 1.08997 * 109.50810 * 303.14984 * 4 2 1 32 32 H 1.09006 * 109.50511 * 181.39940 * 6 5 4 33 33 H 1.09002 * 109.50612 * 61.27212 * 6 5 4 34 34 H 1.09001 * 109.50225 * 296.91232 * 7 6 5 35 35 H 1.08997 * 109.50512 * 176.78378 * 7 6 5 36 36 H 1.09001 * 109.47224 * 53.63567 * 9 8 7 37 37 H 1.09005 * 109.46682 * 173.63048 * 9 8 7 38 38 H 1.07996 * 119.87371 * 359.97280 * 11 10 9 39 39 H 1.08002 * 120.12484 * 180.27748 * 12 11 10 40 40 H 0.97001 * 119.99931 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.12915 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.86940 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 6 2.0411 -0.7240 1.2484 5 8 1.6225 -2.0909 1.2057 6 6 2.0835 -2.7983 0.0514 7 6 1.5728 -2.0953 -1.2091 8 7 2.0209 -0.6952 -1.1987 9 6 1.5990 0.0016 -2.4212 10 6 2.3156 -0.5883 -3.6084 11 6 3.5330 -0.0598 -4.0094 12 6 4.1990 -0.5943 -5.0885 13 6 3.6340 -1.6734 -5.7931 14 6 4.3060 -2.2263 -6.9076 15 1 4.1170 -3.2488 -7.1994 16 6 5.2160 -1.4485 -7.6325 17 7 5.1986 -0.1453 -7.5190 18 14 6.4555 -2.2712 -8.7623 19 1 5.9167 -2.3074 -10.1455 20 1 7.7262 -1.5029 -8.7459 21 1 6.7090 -3.6572 -8.2934 22 6 2.3952 -2.1980 -5.3806 23 6 1.7496 -1.6513 -4.2951 24 1 -0.3634 0.5122 0.8909 25 1 -0.3633 0.5156 -0.8890 26 1 -0.3635 -1.0276 -0.0020 27 1 3.1318 1.4403 -0.0019 28 1 1.6776 1.9566 -0.8890 29 1 1.6807 1.9556 0.8910 30 1 3.1297 -0.6775 1.2760 31 1 1.6331 -0.2461 2.1390 32 1 1.7061 -3.8206 0.0763 33 1 3.1734 -2.8121 0.0443 34 1 0.4835 -2.1288 -1.2284 35 1 1.9688 -2.5977 -2.0917 36 1 0.5230 -0.1137 -2.5522 37 1 1.8435 1.0606 -2.3385 38 1 3.9622 0.7717 -3.4702 39 1 5.1494 -0.1840 -5.3964 40 1 5.8291 0.3938 -8.0217 41 1 1.9522 -3.0258 -5.9144 42 1 0.7985 -2.0521 -3.9770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335111113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -24.764301 kcal Electronic energy + Delta-G solvation = -21766.722948 eV Core-core repulsion = 18711.175319 eV Total energy + Delta-G solvation = -3055.547629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12528 -37.62072 -35.97168 -33.92684 -32.78546 -30.53743 -29.23931 -28.30974 -27.31533 -26.87403 -25.43243 -22.91999 -22.41322 -20.89005 -19.90116 -18.46443 -17.28978 -16.38558 -16.12611 -15.49867 -15.24729 -14.91818 -14.43802 -14.07921 -13.75319 -13.53731 -13.42475 -13.11579 -12.58454 -12.43630 -12.15504 -11.94420 -11.81270 -11.73344 -11.55157 -11.18059 -11.08105 -11.06007 -10.96841 -10.90830 -10.40396 -10.32779 -10.23656 -9.64370 -9.36510 -9.33912 -9.12103 -7.94487 -7.43095 -7.27850 -6.76044 -4.34268 2.73852 3.06299 3.07905 3.10485 3.17612 3.93021 3.94521 4.15056 4.66077 4.79550 5.02643 5.07933 5.18661 5.39941 5.43349 5.59740 5.60726 5.70278 5.71006 5.72910 5.88879 5.93467 5.93759 6.00352 6.01080 6.10269 6.23029 6.29915 6.36262 6.41021 6.47953 6.96148 7.07342 7.20795 7.29253 7.33133 7.43328 7.44548 7.62423 7.88692 8.06204 8.15439 8.30900 8.65336 8.90275 8.98652 10.18616 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004088 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.806329 B = 6847.282102 C = 7085.545576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.067 3.933 3 C -0.140 4.140 4 C 0.077 3.923 5 O -0.388 6.388 6 C 0.063 3.937 7 C 0.017 3.983 8 N -0.517 5.517 9 C 0.115 3.885 10 C -0.206 4.206 11 C -0.079 4.079 12 C -0.167 4.167 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.227 4.227 23 C -0.086 4.086 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.280 0.720 41 H 0.090 0.910 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 0.929 12.061 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 C -0.197 4.197 4 C 0.000 4.000 5 O -0.307 6.307 6 C -0.014 4.014 7 C -0.111 4.111 8 N -0.242 5.242 9 C -0.010 4.010 10 C -0.208 4.208 11 C -0.098 4.098 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.085 1.069 12.127 12.841 hybrid contribution -0.204 -0.135 -0.955 0.986 sum -4.289 0.934 11.172 12.003 Atomic orbital electron populations 1.22375 0.96737 1.02417 1.01786 1.21725 0.93219 0.95084 0.92335 1.21850 1.02050 0.94060 1.01771 1.22641 0.99066 0.81895 0.96437 1.87917 1.76184 1.23003 1.43571 1.22694 0.99184 0.95158 0.84321 1.22807 0.98199 0.90440 0.99685 1.62567 1.58854 1.01449 1.01283 1.20842 0.95620 0.97261 0.87327 1.18844 0.99206 1.02787 0.99970 1.20471 0.94419 0.98371 0.96546 1.21299 1.00799 1.00523 0.95990 1.17610 0.89657 0.90690 0.91041 1.19589 1.20133 0.99236 1.10391 0.90556 1.25896 0.96876 0.94460 0.96837 1.69829 1.31591 1.05368 1.35069 0.86347 0.79941 0.80624 0.80104 1.19619 1.20036 1.18436 1.20931 0.97356 1.05021 1.01365 1.20347 0.97591 0.96290 0.96219 0.92522 0.92484 0.91944 0.91614 0.91831 0.92471 0.92501 0.89177 0.88929 0.92356 0.94465 0.88426 0.95728 0.91069 0.89608 0.86608 0.90930 0.89222 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 7.68 37.15 0.29 -1.89 16 2 C 0.07 0.87 0.68 -131.49 -0.09 0.78 16 3 C -0.14 -1.64 8.20 37.16 0.30 -1.34 16 4 C 0.08 0.96 5.70 37.21 0.21 1.17 16 5 O -0.39 -5.46 10.28 -35.23 -0.36 -5.82 16 6 C 0.06 0.87 7.01 37.21 0.26 1.13 16 7 C 0.02 0.26 4.87 -3.71 -0.02 0.24 16 8 N -0.52 -8.23 4.48 -220.11 -0.99 -9.21 16 9 C 0.12 2.01 4.26 -4.98 -0.02 1.99 16 10 C -0.21 -4.39 4.92 -104.33 -0.51 -4.90 16 11 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 12 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 13 C 0.11 2.99 5.57 -106.83 -0.60 2.39 16 14 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.50 10.97 55.55 0.61 -19.89 16 18 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 23 C -0.09 -1.87 7.89 -39.66 -0.31 -2.19 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.73 6.71 -51.93 -0.35 0.38 16 26 H 0.06 0.84 6.06 -51.93 -0.31 0.52 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.78 6.17 -51.93 -0.32 0.46 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.57 6.38 -51.93 -0.33 0.24 16 35 H 0.10 1.69 6.01 -51.93 -0.31 1.38 16 36 H 0.02 0.42 6.84 -51.93 -0.36 0.07 16 37 H 0.07 1.20 5.70 -51.93 -0.30 0.90 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 40 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 41 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.08 1.60 7.99 -52.49 -0.42 1.18 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -27.19 323.12 -9.30 -36.49 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.38 Total: 6.16 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.02 Total: -26.19 kcal Atomic # 7 Polarization: -28.73 SS G_CDS: -0.38 Total: -29.10 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.36 Total: -5.82 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.19 -9.30 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335111113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.722 kcal (2) G-P(sol) polarization free energy of solvation -27.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds