Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.54755 * 2 1 4 4 C 1.53099 * 109.50508 * 120.10957 * 2 1 3 5 5 O 1.43023 * 109.26047 * 63.08442 * 4 2 1 6 6 C 1.43011 * 113.73582 * 58.66766 * 5 4 2 7 7 C 1.53101 * 109.26203 * 301.33425 * 6 5 4 8 8 N 1.47010 * 109.25665 * 56.84935 * 7 6 5 9 9 C 1.46902 * 110.99758 * 177.60859 * 8 7 6 10 10 C 1.50691 * 109.47317 * 293.63393 * 9 8 7 11 11 C 1.38642 * 119.75014 * 269.73113 * 10 9 8 12 12 C 1.37616 * 120.24508 * 179.71859 * 11 10 9 13 13 C 1.40716 * 119.74843 * 0.57258 * 12 11 10 14 14 C 1.41394 * 120.24503 * 179.68068 * 13 12 11 15 15 H 1.07998 * 120.00119 * 155.30773 * 14 13 12 16 16 C 1.39949 * 119.99914 * 335.31272 * 14 13 12 17 17 N 1.30823 * 119.99958 * 342.22507 * 16 14 13 18 18 Si 1.86803 * 119.99884 * 162.23549 * 16 14 13 19 19 H 1.48495 * 109.47219 * 94.65939 * 18 16 14 20 20 H 1.48498 * 109.46682 * 214.65995 * 18 16 14 21 21 H 1.48499 * 109.47208 * 334.65835 * 18 16 14 22 22 C 1.40714 * 119.51027 * 359.69917 * 13 12 11 23 23 C 1.37623 * 119.74395 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.47413 * 299.89315 * 1 2 3 25 25 H 1.09005 * 109.46852 * 59.88654 * 1 2 3 26 26 H 1.08998 * 109.47883 * 179.88888 * 1 2 3 27 27 H 1.08997 * 109.47176 * 180.10732 * 3 2 1 28 28 H 1.08999 * 109.46939 * 300.11203 * 3 2 1 29 29 H 1.09005 * 109.47108 * 60.10461 * 3 2 1 30 30 H 1.08994 * 109.50946 * 183.01611 * 4 2 1 31 31 H 1.08997 * 109.50810 * 303.14984 * 4 2 1 32 32 H 1.09006 * 109.50511 * 181.39940 * 6 5 4 33 33 H 1.09002 * 109.50612 * 61.27212 * 6 5 4 34 34 H 1.09001 * 109.50225 * 296.91232 * 7 6 5 35 35 H 1.08997 * 109.50512 * 176.78378 * 7 6 5 36 36 H 1.09001 * 109.47224 * 53.63567 * 9 8 7 37 37 H 1.09005 * 109.46682 * 173.63048 * 9 8 7 38 38 H 1.07996 * 119.87371 * 359.97280 * 11 10 9 39 39 H 1.08002 * 120.12484 * 180.27748 * 12 11 10 40 40 H 0.97001 * 119.99931 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.12915 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.86940 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 6 2.0411 -0.7240 1.2484 5 8 1.6225 -2.0909 1.2057 6 6 2.0835 -2.7983 0.0514 7 6 1.5728 -2.0953 -1.2091 8 7 2.0209 -0.6952 -1.1987 9 6 1.5990 0.0016 -2.4212 10 6 2.3156 -0.5883 -3.6084 11 6 3.5330 -0.0598 -4.0094 12 6 4.1990 -0.5943 -5.0885 13 6 3.6340 -1.6734 -5.7931 14 6 4.3060 -2.2263 -6.9076 15 1 4.1170 -3.2488 -7.1994 16 6 5.2160 -1.4485 -7.6325 17 7 5.1986 -0.1453 -7.5190 18 14 6.4555 -2.2712 -8.7623 19 1 5.9167 -2.3074 -10.1455 20 1 7.7262 -1.5029 -8.7459 21 1 6.7090 -3.6572 -8.2934 22 6 2.3952 -2.1980 -5.3806 23 6 1.7496 -1.6513 -4.2951 24 1 -0.3634 0.5122 0.8909 25 1 -0.3633 0.5156 -0.8890 26 1 -0.3635 -1.0276 -0.0020 27 1 3.1318 1.4403 -0.0019 28 1 1.6776 1.9566 -0.8890 29 1 1.6807 1.9556 0.8910 30 1 3.1297 -0.6775 1.2760 31 1 1.6331 -0.2461 2.1390 32 1 1.7061 -3.8206 0.0763 33 1 3.1734 -2.8121 0.0443 34 1 0.4835 -2.1288 -1.2284 35 1 1.9688 -2.5977 -2.0917 36 1 0.5230 -0.1137 -2.5522 37 1 1.8435 1.0606 -2.3385 38 1 3.9622 0.7717 -3.4702 39 1 5.1494 -0.1840 -5.3964 40 1 5.8291 0.3938 -8.0217 41 1 1.9522 -3.0258 -5.9144 42 1 0.7985 -2.0521 -3.9770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335111113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -40.029097 kcal Electronic energy + Delta-G solvation = -21767.384879 eV Core-core repulsion = 18711.175319 eV Total energy + Delta-G solvation = -3056.209560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27736 -39.37033 -37.20360 -35.63924 -34.07955 -32.19032 -31.10232 -29.76194 -28.26700 -28.05556 -26.95868 -24.46735 -23.59638 -22.70809 -21.64575 -19.59206 -19.20055 -17.50198 -17.29947 -17.14521 -16.60855 -16.04355 -15.87017 -15.62018 -15.33875 -14.95981 -14.79948 -14.39680 -14.09945 -13.80090 -13.72326 -13.38931 -13.12994 -12.92977 -12.82186 -12.68673 -12.66332 -12.45729 -12.24200 -12.11373 -12.01417 -11.83877 -11.39759 -11.32973 -11.19784 -10.98553 -10.48119 -9.32195 -9.29458 -9.04905 -8.62904 -6.31750 0.96025 1.16135 1.37643 1.48068 1.53767 2.20956 2.65707 2.92277 3.07379 3.74815 3.82158 3.99202 4.02538 4.09017 4.22581 4.32257 4.39528 4.47948 4.58089 4.60981 4.66084 4.69442 4.75708 4.79419 4.87418 4.90217 4.97223 5.01178 5.06964 5.07268 5.17359 5.26521 5.37789 5.41784 5.48153 5.72444 5.95692 6.07927 6.12665 6.17512 6.29517 6.33118 6.40952 6.72712 6.95988 7.05992 8.34313 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004088 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.806329 B = 6847.282102 C = 7085.545576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 C -0.138 4.138 4 C 0.074 3.926 5 O -0.395 6.395 6 C 0.067 3.933 7 C 0.019 3.981 8 N -0.530 5.530 9 C 0.123 3.877 10 C -0.192 4.192 11 C -0.085 4.085 12 C -0.190 4.190 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.243 4.243 23 C -0.082 4.082 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.287 0.713 41 H 0.093 0.907 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 1.267 13.685 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.003 4.003 5 O -0.313 6.313 6 C -0.010 4.010 7 C -0.109 4.109 8 N -0.255 5.255 9 C -0.003 4.003 10 C -0.194 4.194 11 C -0.103 4.103 12 C -0.210 4.210 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.800 3.200 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.262 4.262 23 C -0.101 4.101 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.820 1.411 13.769 14.656 hybrid contribution -0.090 -0.190 -1.302 1.319 sum -4.910 1.221 12.467 13.454 Atomic orbital electron populations 1.22318 0.95874 1.01950 1.02635 1.21866 0.93885 0.95632 0.91108 1.21847 1.01579 0.93214 1.02856 1.22811 0.99106 0.81272 0.97101 1.87915 1.76244 1.23805 1.43367 1.22683 0.98772 0.95954 0.83553 1.22755 0.98313 0.90229 0.99634 1.62465 1.59561 1.01803 1.01643 1.20716 0.95377 0.97589 0.86612 1.19263 0.98149 1.01477 1.00472 1.20689 0.95070 0.98698 0.95872 1.21250 1.00800 1.01436 0.97474 1.17939 0.90821 0.91629 0.91824 1.19827 1.22379 0.99527 1.11641 0.90920 1.26725 0.98117 0.94864 0.98107 1.69881 1.32510 1.06647 1.36223 0.85238 0.77375 0.79364 0.78005 1.18703 1.18999 1.18359 1.21129 0.97136 1.05509 1.02448 1.20608 0.98300 0.96006 0.95178 0.90389 0.92950 0.93009 0.92369 0.92409 0.89757 0.92865 0.86495 0.87058 0.93076 0.94065 0.90753 0.94970 0.90137 0.88080 0.88500 0.90219 0.88850 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 7.68 71.98 0.55 -3.12 16 2 C 0.06 1.52 0.68 3.54 0.00 1.52 16 3 C -0.14 -2.82 8.20 71.98 0.59 -2.23 16 4 C 0.07 1.63 5.70 72.02 0.41 2.04 16 5 O -0.39 -10.08 10.28 -148.98 -1.53 -11.62 16 6 C 0.07 1.73 7.01 72.02 0.50 2.23 16 7 C 0.02 0.55 4.87 86.32 0.42 0.97 16 8 N -0.53 -15.87 4.48 -850.29 -3.81 -19.68 16 9 C 0.12 4.07 4.26 85.55 0.36 4.44 16 10 C -0.19 -8.03 4.92 -19.68 -0.10 -8.13 16 11 C -0.08 -3.94 9.67 22.22 0.21 -3.73 16 12 C -0.19 -10.19 8.70 22.73 0.20 -10.00 16 13 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 14 C -0.50 -27.85 9.05 23.46 0.21 -27.64 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 16 C 0.04 1.88 5.14 85.26 0.44 2.31 16 17 N -0.83 -44.04 10.97 21.83 0.24 -43.80 16 18 Si 0.98 38.87 29.60 68.60 2.03 40.90 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 23 C -0.08 -3.57 7.89 22.22 0.18 -3.39 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.18 6.71 -2.38 -0.02 1.16 16 26 H 0.05 1.24 6.06 -2.39 -0.01 1.23 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.25 6.17 -2.39 -0.01 1.24 16 29 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.17 6.38 -2.39 -0.02 1.16 16 35 H 0.07 2.52 6.01 -2.39 -0.01 2.51 16 36 H 0.03 1.03 6.84 -2.39 -0.02 1.01 16 37 H 0.08 2.53 5.70 -2.38 -0.01 2.51 16 38 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.10 5.47 6.18 -2.91 -0.02 5.46 16 40 H 0.29 13.80 8.30 -92.71 -0.77 13.04 16 41 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.11 4.06 7.99 -2.91 -0.02 4.04 16 Total: -1.00 -59.86 323.12 2.02 -57.84 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 1.00 Total: 28.62 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 4.09 Total: -52.26 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -3.57 Total: -63.48 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.53 Total: -11.62 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -59.86 2.02 -57.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335111113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.812 kcal (2) G-P(sol) polarization free energy of solvation -59.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds