Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42893 * 109.52142 * 2 1 4 4 C 1.53117 * 109.52359 * 239.87113 * 2 1 3 5 5 C 1.53033 * 109.30750 * 182.36224 * 4 2 1 6 6 N 1.46928 * 109.48452 * 59.15918 * 5 4 2 7 7 C 1.46902 * 110.98784 * 174.18152 * 6 5 4 8 8 C 1.50701 * 109.46858 * 314.22673 * 7 6 5 9 9 C 1.38641 * 119.74724 * 269.72779 * 8 7 6 10 10 C 1.37616 * 120.24620 * 179.72579 * 9 8 7 11 11 C 1.40715 * 119.74633 * 0.52386 * 10 9 8 12 12 C 1.41395 * 120.24572 * 179.72881 * 11 10 9 13 13 H 1.07998 * 119.99868 * 204.40635 * 12 11 10 14 14 C 1.39939 * 120.00139 * 24.40410 * 12 11 10 15 15 N 1.30827 * 119.99795 * 17.85599 * 14 12 11 16 16 Si 1.86795 * 120.00404 * 197.84801 * 14 12 11 17 17 H 1.48502 * 109.47284 * 90.00028 * 16 14 12 18 18 H 1.48494 * 109.47598 * 210.00226 * 16 14 12 19 19 H 1.48508 * 109.46986 * 330.00395 * 16 14 12 20 20 C 1.40724 * 119.51113 * 359.75015 * 11 10 9 21 21 C 1.37610 * 119.74252 * 359.97438 * 20 11 10 22 22 C 1.46847 * 111.21789 * 298.28122 * 6 5 4 23 23 C 1.53038 * 109.52382 * 61.74234 * 22 6 5 24 24 H 1.09002 * 109.46693 * 180.12825 * 1 2 3 25 25 H 1.08998 * 109.47234 * 300.12998 * 1 2 3 26 26 H 1.08996 * 109.46564 * 60.13347 * 1 2 3 27 27 H 0.96702 * 114.00412 * 59.86863 * 3 2 1 28 28 H 1.09008 * 109.49960 * 302.31476 * 4 2 1 29 29 H 1.08997 * 109.50557 * 62.39236 * 4 2 1 30 30 H 1.09008 * 109.46202 * 179.21601 * 5 4 2 31 31 H 1.09003 * 109.46048 * 299.17572 * 5 4 2 32 32 H 1.08994 * 109.47261 * 74.22571 * 7 6 5 33 33 H 1.08999 * 109.47033 * 194.22730 * 7 6 5 34 34 H 1.07997 * 119.87482 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.12582 * 180.27917 * 10 9 8 36 36 H 0.97001 * 119.99815 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.12596 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.87528 * 179.97438 * 21 20 11 39 39 H 1.09007 * 109.46468 * 301.72780 * 22 6 5 40 40 H 1.08997 * 109.46261 * 181.76134 * 22 6 5 41 41 H 1.08993 * 109.50593 * 180.87993 * 23 22 6 42 42 H 1.08998 * 109.53240 * 60.77891 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0418 -0.7244 -1.2482 5 6 3.5710 -0.7732 -1.2136 6 7 4.0116 -1.4767 -0.0014 7 6 5.4686 -1.6642 -0.0021 8 6 5.9104 -2.1612 -1.3545 9 6 5.9714 -3.5243 -1.6002 10 6 6.3680 -3.9893 -2.8332 11 6 6.7229 -3.0757 -3.8429 12 6 7.1374 -3.5419 -5.1117 13 1 7.7653 -2.9232 -5.7357 14 6 6.7342 -4.8051 -5.5590 15 7 5.7185 -5.4056 -4.9938 16 14 7.6458 -5.6338 -6.9630 17 1 8.7551 -6.4558 -6.4162 18 1 6.7085 -6.5054 -7.7159 19 1 8.1989 -4.5989 -7.8733 20 6 6.6626 -1.6944 -3.5803 21 6 6.2577 -1.2520 -2.3418 22 6 3.5722 -0.7735 1.2106 23 6 2.0430 -0.7247 1.2475 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 -0.3632 0.5118 -0.8912 27 1 1.7211 1.8657 0.7640 28 1 1.6457 -1.7397 -1.2677 29 1 1.7147 -0.1890 -2.1394 30 1 3.9375 -1.3007 -2.0944 31 1 3.9667 0.2425 -1.2081 32 1 5.9573 -0.7141 0.2133 33 1 5.7414 -2.3941 0.7601 34 1 5.7029 -4.2237 -0.8224 35 1 6.4106 -5.0514 -3.0239 36 1 5.4392 -6.2814 -5.3036 37 1 6.9331 -0.9845 -4.3478 38 1 6.2110 -0.1924 -2.1378 39 1 3.9679 0.2422 1.2049 40 1 3.9401 -1.3015 2.0903 41 1 1.7174 -0.1891 2.1392 42 1 1.6464 -1.7398 1.2676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335990266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -41.426124 kcal Electronic energy + Delta-G solvation = -21519.118035 eV Core-core repulsion = 18462.847895 eV Total energy + Delta-G solvation = -3056.270140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.59456 -37.75289 -35.96274 -33.75255 -32.45014 -30.80581 -30.19986 -29.19605 -28.21799 -25.88032 -23.61301 -22.88103 -21.49209 -20.92881 -19.84836 -19.37320 -17.26114 -16.35867 -15.75558 -15.31005 -14.83751 -14.70731 -14.46184 -13.99572 -13.91332 -13.47247 -13.29567 -12.94885 -12.48538 -12.23951 -12.13085 -11.90565 -11.79683 -11.78772 -11.40965 -11.20439 -11.07052 -11.00494 -10.91240 -10.73994 -10.44260 -10.37571 -9.92314 -9.72310 -9.50760 -9.33058 -9.08984 -7.80884 -7.40999 -7.21837 -6.73592 -4.32314 2.76394 3.08216 3.10603 3.11978 3.19902 3.94802 4.20148 4.42075 4.72100 4.77012 4.83887 4.95080 5.33768 5.46980 5.52504 5.68401 5.70909 5.73960 5.78529 5.88666 5.90675 5.93465 6.09496 6.12892 6.19448 6.22207 6.31524 6.39814 6.47163 6.58600 6.69110 6.99466 7.09918 7.33302 7.38569 7.59289 7.62437 7.65164 7.68232 7.92661 8.08543 8.18173 8.33252 8.67677 8.92434 9.00866 10.20687 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.003994 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.302663 B = 7009.437804 C = 7274.377298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.126 3.874 3 O -0.557 6.557 4 C -0.101 4.101 5 C 0.060 3.940 6 N -0.533 5.533 7 C 0.121 3.879 8 C -0.213 4.213 9 C -0.080 4.080 10 C -0.168 4.168 11 C 0.113 3.887 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.791 5.791 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.227 4.227 21 C -0.083 4.083 22 C 0.058 3.942 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.368 0.632 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 6.605 9.661 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 O -0.362 6.362 4 C -0.139 4.139 5 C -0.068 4.068 6 N -0.258 5.258 7 C -0.005 4.005 8 C -0.215 4.215 9 C -0.099 4.099 10 C -0.188 4.188 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.417 5.417 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.247 4.247 21 C -0.102 4.102 22 C -0.070 4.070 23 C -0.176 4.176 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.214 0.786 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.690 5.729 9.081 13.207 hybrid contribution 0.315 0.531 -0.078 0.622 sum -7.375 6.260 9.003 13.215 Atomic orbital electron populations 1.22468 0.96129 1.02687 1.02032 1.21324 0.91878 0.82120 0.96147 1.86610 1.77089 1.23425 1.49096 1.21614 0.96836 0.99820 0.95605 1.22077 0.93551 0.96688 0.94470 1.62133 1.13536 1.48797 1.01338 1.20719 0.85591 0.97901 0.96337 1.18878 1.13942 0.93630 0.95044 1.20501 0.99253 0.93667 0.96459 1.21301 1.05753 0.99802 0.91901 1.17618 0.88095 0.90653 0.92632 1.19605 1.27955 1.00290 1.01484 0.90530 1.25896 0.93511 0.96991 0.97722 1.69838 1.19443 1.14266 1.38116 0.86339 0.80100 0.79580 0.80850 1.19299 1.20343 1.18660 1.20938 1.11753 0.95416 0.96549 1.20375 0.99698 0.96298 0.93839 1.21946 0.94579 0.96682 0.93813 1.22232 0.96563 1.01700 0.97101 0.91511 0.92748 0.91927 0.78578 0.90080 0.91339 0.88687 0.94988 0.96085 0.91764 0.89437 0.86538 0.90913 0.89182 0.89943 0.94970 0.91520 0.91994 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.83 37.16 0.33 -1.40 16 2 C 0.13 1.54 0.99 -90.49 -0.09 1.45 16 3 O -0.56 -7.01 11.84 -35.23 -0.42 -7.43 16 4 C -0.10 -1.52 5.10 -26.65 -0.14 -1.66 16 5 C 0.06 1.06 4.44 -3.79 -0.02 1.05 16 6 N -0.53 -9.18 4.80 -236.04 -1.13 -10.31 16 7 C 0.12 2.23 5.42 -4.97 -0.03 2.20 16 8 C -0.21 -4.66 4.15 -104.33 -0.43 -5.10 16 9 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 10 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 11 C 0.11 3.02 5.58 -106.82 -0.60 2.42 16 12 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.85 16 15 N -0.79 -20.58 10.95 55.55 0.61 -19.97 16 16 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 21 C -0.08 -1.88 7.75 -39.66 -0.31 -2.19 16 22 C 0.06 0.81 5.29 -3.83 -0.02 0.79 16 23 C -0.14 -1.61 5.09 -26.65 -0.14 -1.75 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.37 3.08 9.05 45.56 0.41 3.49 16 28 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.09 2.00 5.65 -51.92 -0.29 1.71 16 31 H 0.03 0.60 7.76 -51.93 -0.40 0.19 16 32 H 0.02 0.38 8.02 -51.93 -0.42 -0.04 16 33 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.03 0.47 7.76 -51.93 -0.40 0.06 16 40 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -28.11 331.45 -9.99 -38.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.04 Total: 8.95 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -2.97 Total: -28.07 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: -0.52 Total: -30.28 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.42 Total: -7.43 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.11 -9.99 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.333 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds