Wall clock time and date at job start Mon Mar 30 2020 01:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42893 * 109.52142 * 2 1 4 4 C 1.53117 * 109.52359 * 239.87113 * 2 1 3 5 5 C 1.53033 * 109.30750 * 182.36224 * 4 2 1 6 6 N 1.46928 * 109.48452 * 59.15918 * 5 4 2 7 7 C 1.46902 * 110.98784 * 174.18152 * 6 5 4 8 8 C 1.50701 * 109.46858 * 314.22673 * 7 6 5 9 9 C 1.38641 * 119.74724 * 269.72779 * 8 7 6 10 10 C 1.37616 * 120.24620 * 179.72579 * 9 8 7 11 11 C 1.40715 * 119.74633 * 0.52386 * 10 9 8 12 12 C 1.41395 * 120.24572 * 179.72881 * 11 10 9 13 13 H 1.07998 * 119.99868 * 204.40635 * 12 11 10 14 14 C 1.39939 * 120.00139 * 24.40410 * 12 11 10 15 15 N 1.30827 * 119.99795 * 17.85599 * 14 12 11 16 16 Si 1.86795 * 120.00404 * 197.84801 * 14 12 11 17 17 H 1.48502 * 109.47284 * 90.00028 * 16 14 12 18 18 H 1.48494 * 109.47598 * 210.00226 * 16 14 12 19 19 H 1.48508 * 109.46986 * 330.00395 * 16 14 12 20 20 C 1.40724 * 119.51113 * 359.75015 * 11 10 9 21 21 C 1.37610 * 119.74252 * 359.97438 * 20 11 10 22 22 C 1.46847 * 111.21789 * 298.28122 * 6 5 4 23 23 C 1.53038 * 109.52382 * 61.74234 * 22 6 5 24 24 H 1.09002 * 109.46693 * 180.12825 * 1 2 3 25 25 H 1.08998 * 109.47234 * 300.12998 * 1 2 3 26 26 H 1.08996 * 109.46564 * 60.13347 * 1 2 3 27 27 H 0.96702 * 114.00412 * 59.86863 * 3 2 1 28 28 H 1.09008 * 109.49960 * 302.31476 * 4 2 1 29 29 H 1.08997 * 109.50557 * 62.39236 * 4 2 1 30 30 H 1.09008 * 109.46202 * 179.21601 * 5 4 2 31 31 H 1.09003 * 109.46048 * 299.17572 * 5 4 2 32 32 H 1.08994 * 109.47261 * 74.22571 * 7 6 5 33 33 H 1.08999 * 109.47033 * 194.22730 * 7 6 5 34 34 H 1.07997 * 119.87482 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.12582 * 180.27917 * 10 9 8 36 36 H 0.97001 * 119.99815 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.12596 * 179.97438 * 20 11 10 38 38 H 1.08003 * 119.87528 * 179.97438 * 21 20 11 39 39 H 1.09007 * 109.46468 * 301.72780 * 22 6 5 40 40 H 1.08997 * 109.46261 * 181.76134 * 22 6 5 41 41 H 1.08993 * 109.50593 * 180.87993 * 23 22 6 42 42 H 1.08998 * 109.53240 * 60.77891 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0418 -0.7244 -1.2482 5 6 3.5710 -0.7732 -1.2136 6 7 4.0116 -1.4767 -0.0014 7 6 5.4686 -1.6642 -0.0021 8 6 5.9104 -2.1612 -1.3545 9 6 5.9714 -3.5243 -1.6002 10 6 6.3680 -3.9893 -2.8332 11 6 6.7229 -3.0757 -3.8429 12 6 7.1374 -3.5419 -5.1117 13 1 7.7653 -2.9232 -5.7357 14 6 6.7342 -4.8051 -5.5590 15 7 5.7185 -5.4056 -4.9938 16 14 7.6458 -5.6338 -6.9630 17 1 8.7551 -6.4558 -6.4162 18 1 6.7085 -6.5054 -7.7159 19 1 8.1989 -4.5989 -7.8733 20 6 6.6626 -1.6944 -3.5803 21 6 6.2577 -1.2520 -2.3418 22 6 3.5722 -0.7735 1.2106 23 6 2.0430 -0.7247 1.2475 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 -0.3632 0.5118 -0.8912 27 1 1.7211 1.8657 0.7640 28 1 1.6457 -1.7397 -1.2677 29 1 1.7147 -0.1890 -2.1394 30 1 3.9375 -1.3007 -2.0944 31 1 3.9667 0.2425 -1.2081 32 1 5.9573 -0.7141 0.2133 33 1 5.7414 -2.3941 0.7601 34 1 5.7029 -4.2237 -0.8224 35 1 6.4106 -5.0514 -3.0239 36 1 5.4392 -6.2814 -5.3036 37 1 6.9331 -0.9845 -4.3478 38 1 6.2110 -0.1924 -2.1378 39 1 3.9679 0.2422 1.2049 40 1 3.9401 -1.3015 2.0903 41 1 1.7174 -0.1891 2.1392 42 1 1.6464 -1.7398 1.2676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335990266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:05 Heat of formation + Delta-G solvation = -59.125045 kcal Electronic energy + Delta-G solvation = -21519.885518 eV Core-core repulsion = 18462.847895 eV Total energy + Delta-G solvation = -3057.037623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.79164 -39.43577 -37.31786 -35.53236 -33.66419 -32.15286 -31.69382 -31.05142 -29.56140 -27.46034 -25.13976 -24.12332 -22.88350 -22.70839 -21.46285 -20.63825 -19.21235 -17.37102 -17.20397 -16.89392 -16.34014 -15.91759 -15.80098 -15.54091 -15.31842 -14.96338 -14.81099 -14.26643 -14.01687 -13.80170 -13.55411 -13.27876 -13.12066 -12.91145 -12.80786 -12.76248 -12.62260 -12.35772 -12.24321 -12.07125 -12.03902 -11.95247 -11.43155 -11.25328 -11.04722 -10.96276 -10.66884 -9.36476 -9.29132 -9.01175 -8.62980 -6.32869 0.94577 1.14505 1.37728 1.51015 1.51113 2.20987 2.67540 3.15511 3.40992 3.76863 3.79869 3.86546 3.98030 4.17311 4.30085 4.36758 4.50301 4.54577 4.55740 4.60609 4.69974 4.75690 4.76343 4.85814 4.90108 5.03539 5.04804 5.06838 5.15370 5.16412 5.26100 5.31342 5.36304 5.40631 5.46810 5.71169 5.94549 6.10014 6.16581 6.29841 6.37047 6.40011 6.71196 6.94876 6.96517 7.04346 8.33867 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.003994 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.302663 B = 7009.437804 C = 7274.377298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 O -0.576 6.576 4 C -0.104 4.104 5 C 0.068 3.932 6 N -0.540 5.540 7 C 0.124 3.876 8 C -0.199 4.199 9 C -0.084 4.084 10 C -0.190 4.190 11 C 0.082 3.918 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.824 5.824 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.243 4.243 21 C -0.081 4.081 22 C 0.056 3.944 23 C -0.132 4.132 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.388 0.612 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.288 0.712 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 7.222 11.425 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.089 3.911 3 O -0.384 6.384 4 C -0.142 4.142 5 C -0.060 4.060 6 N -0.265 5.265 7 C -0.003 4.003 8 C -0.200 4.200 9 C -0.103 4.103 10 C -0.210 4.210 11 C 0.080 3.920 12 C -0.533 4.533 13 H 0.091 0.909 14 C -0.178 4.178 15 N -0.450 5.450 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.263 4.263 21 C -0.099 4.099 22 C -0.072 4.072 23 C -0.170 4.170 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.237 0.763 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.736 6.369 10.875 15.334 hybrid contribution 0.586 0.451 -0.502 0.894 sum -8.149 6.820 10.373 14.850 Atomic orbital electron populations 1.22393 0.94017 1.03234 1.03027 1.21217 0.93319 0.81924 0.94638 1.86564 1.77564 1.23651 1.50625 1.21607 0.94791 1.00247 0.97506 1.21870 0.95478 0.95231 0.93374 1.62116 1.12353 1.49675 1.02400 1.20692 0.86782 0.98575 0.94218 1.19252 1.11409 0.92850 0.96521 1.20720 0.98729 0.94911 0.95967 1.21261 1.07576 0.99017 0.93098 1.17937 0.89184 0.91669 0.93255 1.19841 1.29465 1.01925 1.02059 0.90899 1.26740 0.93822 0.96927 1.00357 1.69890 1.20507 1.14874 1.39746 0.85211 0.78774 0.78396 0.77360 1.18627 1.19140 1.18324 1.21114 1.12473 0.94963 0.97754 1.20585 0.98674 0.97495 0.93190 1.22086 0.96371 0.96291 0.92426 1.22228 0.94592 1.02088 0.98110 0.91206 0.90260 0.92467 0.76289 0.90473 0.91875 0.92725 0.96106 0.95209 0.90299 0.87743 0.88221 0.90154 0.88936 0.88002 0.95158 0.90018 0.88624 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.83 71.99 0.64 -2.18 16 2 C 0.13 2.83 0.99 -10.71 -0.01 2.82 16 3 O -0.58 -12.95 11.84 -148.98 -1.76 -14.71 16 4 C -0.10 -3.05 5.10 30.64 0.16 -2.89 16 5 C 0.07 2.42 4.44 86.31 0.38 2.81 16 6 N -0.54 -17.71 4.80 -900.70 -4.32 -22.04 16 7 C 0.12 4.36 5.42 85.56 0.46 4.83 16 8 C -0.20 -8.66 4.15 -19.67 -0.08 -8.75 16 9 C -0.08 -4.03 9.67 22.22 0.21 -3.81 16 10 C -0.19 -10.32 8.70 22.73 0.20 -10.13 16 11 C 0.08 4.58 5.58 -21.29 -0.12 4.47 16 12 C -0.50 -28.11 9.05 23.46 0.21 -27.90 16 13 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 14 C 0.04 1.89 5.14 85.25 0.44 2.32 16 15 N -0.82 -44.26 10.95 21.83 0.24 -44.02 16 16 Si 0.98 39.15 29.59 68.60 2.03 41.18 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 C -0.24 -12.50 9.80 22.73 0.22 -12.28 16 21 C -0.08 -3.68 7.75 22.22 0.17 -3.51 16 22 C 0.06 1.39 5.29 86.33 0.46 1.85 16 23 C -0.13 -2.61 5.09 30.65 0.16 -2.46 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.39 5.10 9.05 -74.06 -0.67 4.43 16 28 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 2.35 5.65 -2.38 -0.01 2.34 16 31 H 0.02 0.77 7.76 -2.39 -0.02 0.75 16 32 H 0.03 1.00 8.02 -2.39 -0.02 0.99 16 33 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 34 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 36 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 37 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.03 0.78 7.76 -2.38 -0.02 0.76 16 40 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -62.97 331.45 0.01 -62.96 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.33 Total: 31.44 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.50 Total: -54.81 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -4.08 Total: -66.06 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.76 Total: -14.71 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -62.97 0.01 -62.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.840 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds