Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.54319 * 2 1 4 4 C 1.53094 * 109.50468 * 239.88690 * 2 1 3 5 5 N 1.47016 * 109.25558 * 183.21602 * 4 2 1 6 6 C 1.46903 * 110.99722 * 182.39728 * 5 4 2 7 7 C 1.50699 * 109.47045 * 302.41097 * 6 5 4 8 8 C 1.38636 * 119.74984 * 90.00434 * 7 6 5 9 9 C 1.37613 * 120.24993 * 179.97438 * 8 7 6 10 10 C 1.40711 * 119.74614 * 0.26968 * 9 8 7 11 11 C 1.41403 * 120.24606 * 179.70288 * 10 9 8 12 12 H 1.07996 * 119.99673 * 24.27398 * 11 10 9 13 13 C 1.39947 * 119.99783 * 204.27786 * 11 10 9 14 14 N 1.30821 * 120.00278 * 17.70402 * 13 11 10 15 15 Si 1.86794 * 119.99656 * 197.69699 * 13 11 10 16 16 H 1.48501 * 109.47529 * 60.00194 * 15 13 11 17 17 H 1.48506 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47379 * 300.00118 * 15 13 11 19 19 C 1.40719 * 119.50996 * 359.43680 * 10 9 8 20 20 C 1.37615 * 119.74398 * 0.58788 * 19 10 9 21 21 C 1.47016 * 110.75357 * 58.62383 * 5 4 2 22 22 C 1.53099 * 109.25366 * 301.38302 * 21 5 4 23 23 O 1.43017 * 109.26048 * 56.84822 * 22 21 5 24 24 H 1.09000 * 109.47191 * 299.89081 * 1 2 3 25 25 H 1.08995 * 109.47199 * 59.89026 * 1 2 3 26 26 H 1.09001 * 109.47442 * 179.89147 * 1 2 3 27 27 H 1.09000 * 109.46676 * 180.10899 * 3 2 1 28 28 H 1.08999 * 109.46955 * 300.10987 * 3 2 1 29 29 H 1.09001 * 109.46613 * 60.10933 * 3 2 1 30 30 H 1.09004 * 109.50682 * 63.28817 * 4 2 1 31 31 H 1.08989 * 109.51373 * 303.15413 * 4 2 1 32 32 H 1.09006 * 109.46819 * 182.41307 * 6 5 4 33 33 H 1.08999 * 109.47346 * 62.41388 * 6 5 4 34 34 H 1.08005 * 119.87237 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.12661 * 180.02562 * 9 8 7 36 36 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.12422 * 180.29259 * 19 10 9 38 38 H 1.07998 * 119.87803 * 179.70785 * 20 19 10 39 39 H 1.08998 * 109.50641 * 61.31011 * 21 5 4 40 40 H 1.08998 * 109.50587 * 181.40358 * 21 5 4 41 41 H 1.08998 * 109.50576 * 176.78701 * 22 21 5 42 42 H 1.09003 * 109.50717 * 296.91543 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5092 -0.7885 -1.2044 6 6 4.0445 -1.4270 -2.4143 7 6 3.4564 -2.8072 -2.5561 8 6 2.2772 -2.9831 -3.2635 9 6 1.7313 -4.2390 -3.3998 10 6 2.3717 -5.3460 -2.8131 11 6 1.8168 -6.6403 -2.9412 12 1 1.1622 -6.8675 -3.7696 13 6 2.1158 -7.6267 -1.9946 14 7 2.6061 -7.2884 -0.8298 15 14 1.8147 -9.4264 -2.3941 16 1 2.6205 -9.8117 -3.5804 17 1 2.2100 -10.2640 -1.2333 18 1 0.3735 -9.6343 -2.6859 19 6 3.5715 -5.1565 -2.1026 20 6 4.0990 -3.8915 -1.9786 21 6 3.9639 -1.4885 0.0058 22 6 3.4334 -0.7569 1.2416 23 8 2.0075 -0.6763 1.1662 24 1 -0.3633 0.5121 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0019 27 1 3.1318 1.4404 -0.0020 28 1 1.6775 1.9567 -0.8890 29 1 1.6807 1.9555 0.8910 30 1 1.7273 -0.1796 -2.1390 31 1 1.6331 -1.7343 -1.2759 32 1 5.1293 -1.5005 -2.3366 33 1 3.7824 -0.8289 -3.2870 34 1 1.7851 -2.1313 -3.7092 35 1 0.8127 -4.3738 -3.9517 36 1 2.8129 -7.9720 -0.1736 37 1 4.0739 -5.9998 -1.6523 38 1 5.0172 -3.7429 -1.4298 39 1 3.5865 -2.5111 -0.0017 40 1 5.0535 -1.5028 0.0303 41 1 3.7200 -1.3042 2.1396 42 1 3.8533 0.2483 1.2777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335990368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = -30.949768 kcal Electronic energy + Delta-G solvation = -22037.476021 eV Core-core repulsion = 18981.660170 eV Total energy + Delta-G solvation = -3055.815851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88078 -37.75685 -35.45093 -33.47957 -33.36871 -30.40078 -29.48401 -28.51448 -27.14767 -26.89873 -24.91156 -23.30931 -21.71586 -20.85900 -19.88065 -18.89652 -17.33532 -16.13118 -15.84585 -15.36908 -14.98332 -14.72233 -14.50711 -14.07283 -13.82132 -13.51280 -13.26979 -12.77449 -12.49825 -12.21525 -12.05553 -11.98524 -11.91650 -11.58872 -11.45327 -11.35131 -11.12716 -11.02328 -10.84768 -10.77482 -10.61057 -10.37866 -10.06113 -9.74635 -9.43623 -9.24992 -9.15812 -7.84405 -7.49160 -7.34127 -6.80175 -4.39348 2.71680 3.01470 3.04045 3.06093 3.16322 3.89639 3.96941 4.35137 4.61312 5.02373 5.15110 5.20206 5.36347 5.54100 5.58641 5.65432 5.71713 5.75322 5.82111 5.89489 5.91987 6.01259 6.06168 6.18543 6.22722 6.29546 6.32144 6.35689 6.36931 6.50237 6.55320 6.89609 7.02666 7.20298 7.29268 7.42234 7.44332 7.51429 7.57165 7.81680 8.00824 8.07421 8.25690 8.59641 8.85260 8.93198 10.14189 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.004740 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.906934 B = 5905.557984 C = 6024.855362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 C -0.165 4.165 4 C 0.031 3.969 5 N -0.528 5.528 6 C 0.114 3.886 7 C -0.252 4.252 8 C -0.077 4.077 9 C -0.229 4.229 10 C 0.114 3.886 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.791 5.791 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.167 4.167 20 C -0.088 4.088 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.377 6.377 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.281 0.719 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 10.767 2.232 11.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 C -0.223 4.223 4 C -0.098 4.098 5 N -0.252 5.252 6 C -0.013 4.013 7 C -0.255 4.255 8 C -0.096 4.096 9 C -0.248 4.248 10 C 0.111 3.889 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.416 5.416 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.186 4.186 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.297 6.297 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.879 11.095 2.631 11.436 hybrid contribution -0.238 -1.696 -0.330 1.745 sum 0.640 9.399 2.301 9.697 Atomic orbital electron populations 1.21730 0.92746 1.03027 1.02023 1.21558 0.94234 0.91464 0.85420 1.22261 1.02776 0.95822 1.01395 1.22713 0.88898 1.00891 0.97256 1.62770 1.08731 1.51077 1.02575 1.20842 0.97990 0.91247 0.91229 1.19621 1.00673 0.94776 1.10384 1.20350 0.95264 0.95709 0.98304 1.20956 1.01235 0.92648 1.09983 1.17617 0.90070 0.92244 0.88949 1.19582 1.25937 0.94828 1.08905 0.90513 1.25913 0.92865 1.01520 0.93851 1.69816 1.31928 1.36034 1.03840 0.86374 0.79893 0.81445 0.79064 1.18796 1.20290 1.18974 1.21302 0.96978 0.95665 1.04664 1.20511 0.97956 0.93282 0.98990 1.22758 1.00167 0.98140 0.90452 1.22625 0.81374 0.99616 0.97626 1.88003 1.20950 1.77941 1.42777 0.92020 0.91260 0.91656 0.91108 0.92095 0.92933 0.90835 0.92086 0.91697 0.91687 0.89808 0.89185 0.90777 0.86591 0.89839 0.92185 0.90652 0.89145 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.85 37.16 0.33 -1.48 16 2 C 0.11 1.67 1.11 -90.57 -0.10 1.57 16 3 C -0.17 -2.07 8.17 37.16 0.30 -1.77 16 4 C 0.03 0.51 3.53 -3.71 -0.01 0.50 16 5 N -0.53 -8.67 4.30 -235.75 -1.01 -9.68 16 6 C 0.11 1.97 5.57 -4.97 -0.03 1.95 16 7 C -0.25 -5.29 4.04 -104.33 -0.42 -5.71 16 8 C -0.08 -1.69 7.88 -39.66 -0.31 -2.01 16 9 C -0.23 -5.59 9.80 -38.88 -0.38 -5.97 16 10 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 11 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 12 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 13 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 14 N -0.79 -20.50 10.95 55.55 0.61 -19.89 16 15 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 16 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 20 C -0.09 -2.02 7.99 -39.66 -0.32 -2.33 16 21 C 0.01 0.22 5.11 -3.71 -0.02 0.20 16 22 C 0.06 0.95 6.61 37.21 0.25 1.20 16 23 O -0.38 -6.32 10.28 -35.23 -0.36 -6.69 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.93 6.13 -51.93 -0.32 0.61 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.23 6.22 -51.94 -0.32 0.90 16 32 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 33 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.08 1.64 8.01 -52.48 -0.42 1.22 16 35 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 36 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 38 H 0.08 1.74 8.02 -52.49 -0.42 1.32 16 39 H 0.06 1.20 6.33 -51.93 -0.33 0.87 16 40 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -27.33 326.46 -9.62 -36.95 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.66 Total: 7.65 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.08 Total: -26.89 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: -0.41 Total: -29.58 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.36 Total: -6.69 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.33 -9.62 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.004 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds