Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.54319 * 2 1 4 4 C 1.53094 * 109.50468 * 239.88690 * 2 1 3 5 5 N 1.47016 * 109.25558 * 183.21602 * 4 2 1 6 6 C 1.46903 * 110.99722 * 182.39728 * 5 4 2 7 7 C 1.50699 * 109.47045 * 302.41097 * 6 5 4 8 8 C 1.38636 * 119.74984 * 90.00434 * 7 6 5 9 9 C 1.37613 * 120.24993 * 179.97438 * 8 7 6 10 10 C 1.40711 * 119.74614 * 0.26968 * 9 8 7 11 11 C 1.41403 * 120.24606 * 179.70288 * 10 9 8 12 12 H 1.07996 * 119.99673 * 24.27398 * 11 10 9 13 13 C 1.39947 * 119.99783 * 204.27786 * 11 10 9 14 14 N 1.30821 * 120.00278 * 17.70402 * 13 11 10 15 15 Si 1.86794 * 119.99656 * 197.69699 * 13 11 10 16 16 H 1.48501 * 109.47529 * 60.00194 * 15 13 11 17 17 H 1.48506 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47379 * 300.00118 * 15 13 11 19 19 C 1.40719 * 119.50996 * 359.43680 * 10 9 8 20 20 C 1.37615 * 119.74398 * 0.58788 * 19 10 9 21 21 C 1.47016 * 110.75357 * 58.62383 * 5 4 2 22 22 C 1.53099 * 109.25366 * 301.38302 * 21 5 4 23 23 O 1.43017 * 109.26048 * 56.84822 * 22 21 5 24 24 H 1.09000 * 109.47191 * 299.89081 * 1 2 3 25 25 H 1.08995 * 109.47199 * 59.89026 * 1 2 3 26 26 H 1.09001 * 109.47442 * 179.89147 * 1 2 3 27 27 H 1.09000 * 109.46676 * 180.10899 * 3 2 1 28 28 H 1.08999 * 109.46955 * 300.10987 * 3 2 1 29 29 H 1.09001 * 109.46613 * 60.10933 * 3 2 1 30 30 H 1.09004 * 109.50682 * 63.28817 * 4 2 1 31 31 H 1.08989 * 109.51373 * 303.15413 * 4 2 1 32 32 H 1.09006 * 109.46819 * 182.41307 * 6 5 4 33 33 H 1.08999 * 109.47346 * 62.41388 * 6 5 4 34 34 H 1.08005 * 119.87237 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.12661 * 180.02562 * 9 8 7 36 36 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.12422 * 180.29259 * 19 10 9 38 38 H 1.07998 * 119.87803 * 179.70785 * 20 19 10 39 39 H 1.08998 * 109.50641 * 61.31011 * 21 5 4 40 40 H 1.08998 * 109.50587 * 181.40358 * 21 5 4 41 41 H 1.08998 * 109.50576 * 176.78701 * 22 21 5 42 42 H 1.09003 * 109.50717 * 296.91543 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5092 -0.7885 -1.2044 6 6 4.0445 -1.4270 -2.4143 7 6 3.4564 -2.8072 -2.5561 8 6 2.2772 -2.9831 -3.2635 9 6 1.7313 -4.2390 -3.3998 10 6 2.3717 -5.3460 -2.8131 11 6 1.8168 -6.6403 -2.9412 12 1 1.1622 -6.8675 -3.7696 13 6 2.1158 -7.6267 -1.9946 14 7 2.6061 -7.2884 -0.8298 15 14 1.8147 -9.4264 -2.3941 16 1 2.6205 -9.8117 -3.5804 17 1 2.2100 -10.2640 -1.2333 18 1 0.3735 -9.6343 -2.6859 19 6 3.5715 -5.1565 -2.1026 20 6 4.0990 -3.8915 -1.9786 21 6 3.9639 -1.4885 0.0058 22 6 3.4334 -0.7569 1.2416 23 8 2.0075 -0.6763 1.1662 24 1 -0.3633 0.5121 0.8910 25 1 -0.3633 0.5155 -0.8890 26 1 -0.3634 -1.0276 -0.0019 27 1 3.1318 1.4404 -0.0020 28 1 1.6775 1.9567 -0.8890 29 1 1.6807 1.9555 0.8910 30 1 1.7273 -0.1796 -2.1390 31 1 1.6331 -1.7343 -1.2759 32 1 5.1293 -1.5005 -2.3366 33 1 3.7824 -0.8289 -3.2870 34 1 1.7851 -2.1313 -3.7092 35 1 0.8127 -4.3738 -3.9517 36 1 2.8129 -7.9720 -0.1736 37 1 4.0739 -5.9998 -1.6523 38 1 5.0172 -3.7429 -1.4298 39 1 3.5865 -2.5111 -0.0017 40 1 5.0535 -1.5028 0.0303 41 1 3.7200 -1.3042 2.1396 42 1 3.8533 0.2483 1.2777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335990368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = -46.409648 kcal Electronic energy + Delta-G solvation = -22038.146412 eV Core-core repulsion = 18981.660170 eV Total energy + Delta-G solvation = -3056.486242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18509 -39.46293 -36.97819 -35.27664 -34.51989 -32.11719 -31.30594 -29.96239 -28.41359 -28.16027 -26.52583 -24.73622 -23.23254 -22.61944 -21.56822 -20.14638 -19.24898 -17.38702 -17.26350 -17.06187 -16.33955 -16.14963 -15.84934 -15.55652 -15.46796 -15.27774 -14.63557 -14.25206 -14.01349 -13.75288 -13.54682 -13.23684 -13.18394 -12.94335 -12.89163 -12.76108 -12.62591 -12.50419 -12.44145 -12.20495 -12.04404 -11.85960 -11.62842 -11.29594 -11.19613 -11.01126 -10.47540 -9.40046 -9.30899 -9.18660 -8.67654 -6.37659 0.91640 1.10594 1.33979 1.45303 1.49840 2.17022 2.65203 2.83830 3.08675 3.70990 3.85105 4.02054 4.07434 4.14676 4.28558 4.32218 4.39113 4.45477 4.52817 4.62732 4.65226 4.73683 4.79226 4.84380 4.92740 4.95479 5.00076 5.02842 5.11055 5.12532 5.14308 5.28330 5.32445 5.42844 5.46509 5.65958 5.90375 5.99465 6.06295 6.08188 6.25361 6.35316 6.35881 6.66838 6.90419 7.00265 8.29047 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.004740 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.906934 B = 5905.557984 C = 6024.855362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.106 3.894 3 C -0.156 4.156 4 C 0.033 3.967 5 N -0.513 5.513 6 C 0.116 3.884 7 C -0.235 4.235 8 C -0.075 4.075 9 C -0.247 4.247 10 C 0.080 3.920 11 C -0.504 4.504 12 H 0.073 0.927 13 C 0.035 3.965 14 N -0.826 5.826 15 Si 0.982 3.018 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.193 4.193 20 C -0.090 4.090 21 C 0.014 3.986 22 C 0.065 3.935 23 O -0.402 6.402 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.288 0.712 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.017 0.983 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 12.901 2.147 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.067 3.933 3 C -0.213 4.213 4 C -0.096 4.096 5 N -0.236 5.236 6 C -0.011 4.011 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.267 4.267 10 C 0.078 3.922 11 C -0.534 4.534 12 H 0.092 0.908 13 C -0.179 4.179 14 N -0.452 5.452 15 Si 0.802 3.198 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.184 1.184 19 C -0.213 4.213 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.012 4.012 23 O -0.322 6.322 24 H 0.092 0.908 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.036 0.964 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.256 13.252 2.546 13.552 hybrid contribution -0.336 -2.188 -0.286 2.232 sum 0.920 11.064 2.260 11.330 Atomic orbital electron populations 1.21765 0.91847 1.02033 1.03773 1.21761 0.95074 0.92543 0.83890 1.22175 1.02413 0.93948 1.02773 1.22733 0.88637 0.99011 0.99172 1.62827 1.08680 1.49953 1.02108 1.20947 0.98733 0.88935 0.92531 1.20084 0.99632 0.96345 1.07660 1.20660 0.95400 0.95552 0.97793 1.21163 1.01657 0.93444 1.10425 1.17961 0.90859 0.93230 0.90145 1.19830 1.27587 0.96099 1.09876 0.90846 1.26767 0.92157 1.05840 0.93164 1.69881 1.32962 1.37645 1.04734 0.85262 0.79914 0.75525 0.79071 1.18388 1.19076 1.18351 1.21262 0.97487 0.96459 1.06065 1.20745 0.98579 0.92778 0.98761 1.22793 1.01184 0.96032 0.91440 1.22736 0.80623 1.00728 0.97102 1.87985 1.22041 1.78569 1.43619 0.90780 0.89026 0.94016 0.91482 0.90475 0.91841 0.89211 0.96317 0.90207 0.89687 0.86910 0.88960 0.90187 0.88573 0.88116 0.96430 0.88856 0.88103 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.85 71.98 0.64 -2.72 16 2 C 0.11 2.93 1.11 -10.76 -0.01 2.92 16 3 C -0.16 -3.34 8.17 71.98 0.59 -2.75 16 4 C 0.03 1.03 3.53 86.31 0.30 1.33 16 5 N -0.51 -15.55 4.30 -899.78 -3.87 -19.42 16 6 C 0.12 3.69 5.57 85.56 0.48 4.16 16 7 C -0.23 -9.66 4.04 -19.67 -0.08 -9.74 16 8 C -0.08 -3.26 7.88 22.22 0.18 -3.09 16 9 C -0.25 -12.45 9.80 22.73 0.22 -12.23 16 10 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 11 C -0.50 -28.17 9.05 23.46 0.21 -27.95 16 12 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 13 C 0.04 1.84 5.14 85.26 0.44 2.28 16 14 N -0.83 -44.71 10.95 21.83 0.24 -44.47 16 15 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 19 C -0.19 -10.43 8.70 22.73 0.20 -10.23 16 20 C -0.09 -4.15 7.99 22.22 0.18 -3.97 16 21 C 0.01 0.44 5.11 86.31 0.44 0.88 16 22 C 0.06 1.78 6.61 72.02 0.48 2.26 16 23 O -0.40 -12.97 10.28 -148.98 -1.53 -14.50 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.50 6.13 -2.39 -0.01 1.48 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.02 0.74 6.22 -2.39 -0.01 0.73 16 32 H 0.08 2.36 8.05 -2.38 -0.02 2.34 16 33 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 34 H 0.11 4.18 8.01 -2.91 -0.02 4.15 16 35 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 37 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 38 H 0.10 4.20 8.02 -2.91 -0.02 4.18 16 39 H 0.02 0.70 6.33 -2.39 -0.02 0.69 16 40 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 42 H 0.08 1.77 6.49 -2.39 -0.02 1.75 16 Total: -1.00 -62.08 326.46 1.99 -60.09 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.99 Total: 31.53 kcal Atomic # 6 Polarization: -58.62 SS G_CDS: 4.14 Total: -54.48 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -3.63 Total: -63.89 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.53 Total: -14.50 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -62.08 1.99 -60.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.682 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds