Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.50583 * 2 1 4 4 C 1.53114 * 109.50090 * 239.91425 * 2 1 3 5 5 C 1.53121 * 109.15737 * 182.36590 * 4 2 1 6 6 C 1.53039 * 109.27918 * 57.66181 * 5 4 2 7 7 N 1.46848 * 109.52127 * 300.81635 * 6 5 4 8 8 C 1.46894 * 111.00268 * 185.83717 * 7 6 5 9 9 C 1.50706 * 109.47007 * 66.04683 * 8 7 6 10 10 C 1.38638 * 119.74587 * 269.72708 * 9 8 7 11 11 C 1.37617 * 120.24150 * 179.76307 * 10 9 8 12 12 C 1.40721 * 119.74617 * 0.52905 * 11 10 9 13 13 C 1.41395 * 120.24047 * 179.74794 * 12 11 10 14 14 H 1.08004 * 120.00052 * 150.21259 * 13 12 11 15 15 C 1.39943 * 120.00333 * 330.20393 * 13 12 11 16 16 N 1.30828 * 120.00041 * 161.73623 * 15 13 12 17 17 Si 1.86800 * 120.00060 * 341.73903 * 15 13 12 18 18 H 1.48506 * 109.47178 * 95.40661 * 17 15 13 19 19 H 1.48499 * 109.47213 * 215.40960 * 17 15 13 20 20 H 1.48497 * 109.47202 * 335.41012 * 17 15 13 21 21 C 1.40711 * 119.51295 * 359.72598 * 12 11 10 22 22 C 1.37620 * 119.74404 * 0.02562 * 21 12 11 23 23 C 1.46854 * 111.19718 * 61.74434 * 7 6 5 24 24 H 1.09002 * 109.46975 * 59.99749 * 1 2 3 25 25 H 1.08993 * 109.47661 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47123 * 300.00643 * 1 2 3 27 27 H 0.96697 * 113.99843 * 299.91548 * 3 2 1 28 28 H 1.09000 * 109.52531 * 302.27269 * 4 2 1 29 29 H 1.09004 * 109.52209 * 62.47076 * 4 2 1 30 30 H 1.09003 * 109.50149 * 177.59378 * 5 4 2 31 31 H 1.08993 * 109.50519 * 297.67634 * 5 4 2 32 32 H 1.09004 * 109.46279 * 60.82755 * 6 5 4 33 33 H 1.08998 * 109.46454 * 180.81454 * 6 5 4 34 34 H 1.08996 * 109.47351 * 186.04876 * 8 7 6 35 35 H 1.09006 * 109.47326 * 306.05092 * 8 7 6 36 36 H 1.07994 * 119.87833 * 0.02562 * 10 9 8 37 37 H 1.08000 * 120.12398 * 180.23414 * 11 10 9 38 38 H 0.96997 * 119.99757 * 180.02562 * 16 15 13 39 39 H 1.07995 * 120.13267 * 179.97438 * 21 12 11 40 40 H 1.08003 * 119.87930 * 180.02562 * 22 21 12 41 41 H 1.08999 * 109.46575 * 178.24582 * 23 7 6 42 42 H 1.08999 * 109.46548 * 58.27006 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0072 1.3470 0.0000 4 6 2.0411 -0.7235 -1.2489 5 6 3.5712 -0.7708 -1.2113 6 6 4.0237 -1.4718 0.0716 7 7 3.5101 -0.7412 1.2373 8 6 4.0386 -1.3047 2.4866 9 6 5.5273 -1.0787 2.5494 10 6 6.3902 -2.0316 2.0304 11 6 7.7512 -1.8335 2.0779 12 6 8.2663 -0.6634 2.6660 13 6 9.6630 -0.4516 2.7252 14 1 10.0580 0.5535 2.7084 15 6 10.5337 -1.5442 2.8057 16 7 11.7984 -1.3964 2.5051 17 14 9.8902 -3.2138 3.3422 18 1 9.5625 -4.0266 2.1433 19 1 10.9283 -3.9102 4.1438 20 1 8.6681 -3.0319 4.1659 21 6 7.3811 0.2944 3.1943 22 6 6.0236 0.0776 3.1312 23 6 2.0417 -0.7233 1.2480 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 1.7232 1.8648 -0.7657 28 1 1.6457 -1.7391 -1.2690 29 1 1.7151 -0.1868 -2.1398 30 1 3.9395 -1.3222 -2.0765 31 1 3.9672 0.2444 -1.2312 32 1 3.6387 -2.4915 0.0835 33 1 5.1129 -1.4942 0.1084 34 1 3.5609 -0.8167 3.3361 35 1 3.8319 -2.3745 2.5188 36 1 5.9928 -2.9308 1.5834 37 1 8.4216 -2.5753 1.6696 38 1 12.4018 -2.1538 2.5606 39 1 7.7656 1.1957 3.6483 40 1 5.3422 0.8115 3.5356 41 1 1.6912 -0.2023 2.1389 42 1 1.6660 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335990400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = -38.952919 kcal Electronic energy + Delta-G solvation = -21537.757078 eV Core-core repulsion = 18481.594184 eV Total energy + Delta-G solvation = -3056.162894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66760 -37.91057 -35.98183 -33.74169 -32.74315 -31.43303 -30.55910 -29.65186 -27.13587 -26.58103 -24.17606 -22.58588 -21.83920 -21.06915 -19.82734 -19.70993 -17.36256 -16.37744 -15.86435 -15.61827 -15.20498 -14.61652 -14.54550 -14.10516 -13.80439 -13.59449 -13.53364 -13.14911 -12.79047 -12.63090 -12.27443 -12.08805 -12.02307 -11.88846 -11.74903 -11.47081 -11.11138 -10.91469 -10.74496 -10.70959 -10.51587 -10.24893 -10.15740 -9.77817 -9.66912 -9.49331 -9.07530 -7.92130 -7.61991 -7.42863 -6.90535 -4.42512 2.59297 2.77582 3.12986 3.23789 3.34835 4.01977 4.08876 4.24207 4.62441 4.65431 4.77731 4.88871 5.11099 5.30434 5.39826 5.46953 5.52323 5.58537 5.60026 5.64119 5.74486 5.80625 5.86644 5.92975 5.97141 6.08599 6.13175 6.19836 6.24502 6.38711 6.46871 6.63618 6.89949 6.97398 7.24390 7.41922 7.42548 7.51726 7.67558 7.77429 7.90204 7.94825 8.20539 8.41430 8.72694 8.86189 10.12309 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034209 B = 0.004138 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.297677 B = 6765.208650 C = 6844.383002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.134 3.866 3 O -0.537 6.537 4 C -0.145 4.145 5 C -0.113 4.113 6 C 0.054 3.946 7 N -0.519 5.519 8 C 0.119 3.881 9 C -0.205 4.205 10 C -0.071 4.071 11 C -0.238 4.238 12 C 0.095 3.905 13 C -0.450 4.450 14 H 0.089 0.911 15 C 0.084 3.916 16 N -0.812 5.812 17 Si 0.912 3.088 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.245 1.245 21 C -0.211 4.211 22 C -0.058 4.058 23 C 0.070 3.930 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.365 0.635 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.284 0.716 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -1.181 -5.375 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.093 3.907 3 O -0.341 6.341 4 C -0.183 4.183 5 C -0.150 4.150 6 C -0.074 4.074 7 N -0.243 5.243 8 C -0.007 4.007 9 C -0.207 4.207 10 C -0.090 4.090 11 C -0.257 4.257 12 C 0.092 3.908 13 C -0.478 4.478 14 H 0.107 0.893 15 C -0.134 4.134 16 N -0.436 5.436 17 Si 0.739 3.261 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.168 1.168 21 C -0.230 4.230 22 C -0.077 4.077 23 C -0.059 4.059 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.211 0.789 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.949 -0.955 -4.859 18.619 hybrid contribution -0.641 -1.496 -0.403 1.677 sum -18.590 -2.451 -5.263 19.476 Atomic orbital electron populations 1.22478 0.96141 1.02453 1.02490 1.21190 0.91253 0.83354 0.94949 1.86747 1.76903 1.22219 1.48227 1.22284 0.97541 1.00765 0.97692 1.21505 0.94295 1.02368 0.96880 1.22139 1.01846 0.93510 0.89902 1.61913 1.05357 1.54577 1.02493 1.20741 0.93607 0.95703 0.90688 1.18861 0.92242 0.98142 1.11434 1.20433 0.93483 0.96840 0.98226 1.20979 0.94173 1.01157 1.09434 1.17731 0.93571 0.90992 0.88463 1.19505 0.89325 0.95650 1.43360 0.89256 1.26146 0.94468 1.01173 0.91608 1.69707 1.05261 1.34095 1.34558 0.86307 0.79466 0.80577 0.79758 1.19816 1.21997 1.16776 1.21016 0.92645 1.01691 1.07669 1.20456 0.94695 0.95131 0.97384 1.22012 0.89394 0.97340 0.97105 0.92288 0.91887 0.91725 0.78940 0.91769 0.91935 0.92036 0.90389 0.96138 0.89192 0.91489 0.95925 0.89438 0.88438 0.90578 0.88312 0.88813 0.90527 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.82 37.16 0.33 -1.17 16 2 C 0.13 1.49 1.00 -90.53 -0.09 1.40 16 3 O -0.54 -6.76 12.31 -35.23 -0.43 -7.20 16 4 C -0.14 -1.52 4.99 -26.61 -0.13 -1.65 16 5 C -0.11 -1.46 5.94 -26.65 -0.16 -1.62 16 6 C 0.05 0.83 5.16 -3.83 -0.02 0.81 16 7 N -0.52 -8.35 4.53 -236.10 -1.07 -9.42 16 8 C 0.12 2.03 5.11 -4.98 -0.03 2.01 16 9 C -0.21 -4.24 4.91 -104.33 -0.51 -4.75 16 10 C -0.07 -1.55 7.85 -39.66 -0.31 -1.86 16 11 C -0.24 -5.82 7.18 -38.87 -0.28 -6.10 16 12 C 0.10 2.47 5.10 -106.82 -0.55 1.93 16 13 C -0.45 -12.44 9.57 -37.74 -0.36 -12.80 16 14 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 15 C 0.08 2.26 5.40 -17.34 -0.09 2.16 16 16 N -0.81 -22.05 13.93 55.55 0.77 -21.27 16 17 Si 0.91 21.23 24.52 -169.99 -4.17 17.06 16 18 H -0.27 -6.14 6.71 56.52 0.38 -5.76 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.24 -5.84 6.86 56.52 0.39 -5.45 16 21 C -0.21 -5.05 9.80 -38.87 -0.38 -5.43 16 22 C -0.06 -1.26 9.67 -39.66 -0.38 -1.64 16 23 C 0.07 0.92 4.43 -3.82 -0.02 0.90 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.36 3.10 9.05 45.56 0.41 3.51 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 1.61 5.76 -51.93 -0.30 1.31 16 34 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.09 1.70 7.96 -52.49 -0.42 1.28 16 37 H 0.10 2.39 4.73 -52.49 -0.25 2.14 16 38 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 41 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -29.13 327.81 -8.97 -38.09 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.03 Total: 5.62 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -2.98 Total: -27.83 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: -0.30 Total: -30.69 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.43 Total: -7.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.17 Total: 17.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.13 -8.97 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.862 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds