Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.50583 * 2 1 4 4 C 1.53114 * 109.50090 * 239.91425 * 2 1 3 5 5 C 1.53121 * 109.15737 * 182.36590 * 4 2 1 6 6 C 1.53039 * 109.27918 * 57.66181 * 5 4 2 7 7 N 1.46848 * 109.52127 * 300.81635 * 6 5 4 8 8 C 1.46894 * 111.00268 * 185.83717 * 7 6 5 9 9 C 1.50706 * 109.47007 * 66.04683 * 8 7 6 10 10 C 1.38638 * 119.74587 * 269.72708 * 9 8 7 11 11 C 1.37617 * 120.24150 * 179.76307 * 10 9 8 12 12 C 1.40721 * 119.74617 * 0.52905 * 11 10 9 13 13 C 1.41395 * 120.24047 * 179.74794 * 12 11 10 14 14 H 1.08004 * 120.00052 * 150.21259 * 13 12 11 15 15 C 1.39943 * 120.00333 * 330.20393 * 13 12 11 16 16 N 1.30828 * 120.00041 * 161.73623 * 15 13 12 17 17 Si 1.86800 * 120.00060 * 341.73903 * 15 13 12 18 18 H 1.48506 * 109.47178 * 95.40661 * 17 15 13 19 19 H 1.48499 * 109.47213 * 215.40960 * 17 15 13 20 20 H 1.48497 * 109.47202 * 335.41012 * 17 15 13 21 21 C 1.40711 * 119.51295 * 359.72598 * 12 11 10 22 22 C 1.37620 * 119.74404 * 0.02562 * 21 12 11 23 23 C 1.46854 * 111.19718 * 61.74434 * 7 6 5 24 24 H 1.09002 * 109.46975 * 59.99749 * 1 2 3 25 25 H 1.08993 * 109.47661 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47123 * 300.00643 * 1 2 3 27 27 H 0.96697 * 113.99843 * 299.91548 * 3 2 1 28 28 H 1.09000 * 109.52531 * 302.27269 * 4 2 1 29 29 H 1.09004 * 109.52209 * 62.47076 * 4 2 1 30 30 H 1.09003 * 109.50149 * 177.59378 * 5 4 2 31 31 H 1.08993 * 109.50519 * 297.67634 * 5 4 2 32 32 H 1.09004 * 109.46279 * 60.82755 * 6 5 4 33 33 H 1.08998 * 109.46454 * 180.81454 * 6 5 4 34 34 H 1.08996 * 109.47351 * 186.04876 * 8 7 6 35 35 H 1.09006 * 109.47326 * 306.05092 * 8 7 6 36 36 H 1.07994 * 119.87833 * 0.02562 * 10 9 8 37 37 H 1.08000 * 120.12398 * 180.23414 * 11 10 9 38 38 H 0.96997 * 119.99757 * 180.02562 * 16 15 13 39 39 H 1.07995 * 120.13267 * 179.97438 * 21 12 11 40 40 H 1.08003 * 119.87930 * 180.02562 * 22 21 12 41 41 H 1.08999 * 109.46575 * 178.24582 * 23 7 6 42 42 H 1.08999 * 109.46548 * 58.27006 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0072 1.3470 0.0000 4 6 2.0411 -0.7235 -1.2489 5 6 3.5712 -0.7708 -1.2113 6 6 4.0237 -1.4718 0.0716 7 7 3.5101 -0.7412 1.2373 8 6 4.0386 -1.3047 2.4866 9 6 5.5273 -1.0787 2.5494 10 6 6.3902 -2.0316 2.0304 11 6 7.7512 -1.8335 2.0779 12 6 8.2663 -0.6634 2.6660 13 6 9.6630 -0.4516 2.7252 14 1 10.0580 0.5535 2.7084 15 6 10.5337 -1.5442 2.8057 16 7 11.7984 -1.3964 2.5051 17 14 9.8902 -3.2138 3.3422 18 1 9.5625 -4.0266 2.1433 19 1 10.9283 -3.9102 4.1438 20 1 8.6681 -3.0319 4.1659 21 6 7.3811 0.2944 3.1943 22 6 6.0236 0.0776 3.1312 23 6 2.0417 -0.7233 1.2480 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 1.7232 1.8648 -0.7657 28 1 1.6457 -1.7391 -1.2690 29 1 1.7151 -0.1868 -2.1398 30 1 3.9395 -1.3222 -2.0765 31 1 3.9672 0.2444 -1.2312 32 1 3.6387 -2.4915 0.0835 33 1 5.1129 -1.4942 0.1084 34 1 3.5609 -0.8167 3.3361 35 1 3.8319 -2.3745 2.5188 36 1 5.9928 -2.9308 1.5834 37 1 8.4216 -2.5753 1.6696 38 1 12.4018 -2.1538 2.5606 39 1 7.7656 1.1957 3.6483 40 1 5.3422 0.8115 3.5356 41 1 1.6912 -0.2023 2.1389 42 1 1.6660 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335990400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = -58.836186 kcal Electronic energy + Delta-G solvation = -21538.619281 eV Core-core repulsion = 18481.594184 eV Total energy + Delta-G solvation = -3057.025097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.73834 -39.56876 -37.18414 -35.53368 -34.01026 -32.37474 -32.16202 -31.47813 -28.65405 -27.49169 -25.70899 -23.78789 -23.47253 -22.45557 -21.51865 -20.67612 -19.34562 -17.52150 -17.24234 -16.86631 -16.49078 -16.06607 -15.67684 -15.62675 -15.26854 -15.13678 -14.72674 -14.55952 -14.11618 -14.03879 -13.71921 -13.50902 -13.21640 -12.90653 -12.86142 -12.72749 -12.62812 -12.44062 -12.35934 -12.01410 -11.85974 -11.73449 -11.59398 -11.42349 -11.09432 -10.93427 -10.59091 -9.48321 -9.36787 -9.02465 -8.89528 -6.48324 0.76442 0.90455 1.24851 1.39158 1.48301 2.12479 2.54311 3.09925 3.40472 3.60665 3.84168 3.88310 4.02444 4.13916 4.21804 4.29791 4.40658 4.42180 4.51323 4.61590 4.66979 4.69891 4.75464 4.77969 4.81931 4.88985 4.99463 5.03594 5.06876 5.08634 5.11113 5.28035 5.34270 5.36735 5.44934 5.63418 5.76643 5.92232 6.06678 6.25830 6.27931 6.35343 6.43566 6.76502 6.85437 7.07458 8.19646 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034209 B = 0.004138 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.297677 B = 6765.208650 C = 6844.383002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 O -0.564 6.564 4 C -0.139 4.139 5 C -0.111 4.111 6 C 0.052 3.948 7 N -0.537 5.537 8 C 0.121 3.879 9 C -0.183 4.183 10 C -0.072 4.072 11 C -0.248 4.248 12 C 0.074 3.926 13 C -0.490 4.490 14 H 0.052 0.948 15 C 0.048 3.952 16 N -0.854 5.854 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.254 1.254 21 C -0.224 4.224 22 C -0.062 4.062 23 C 0.065 3.935 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.381 0.619 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.293 0.707 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 -2.776 -6.036 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.091 3.909 3 O -0.371 6.371 4 C -0.176 4.176 5 C -0.149 4.149 6 C -0.075 4.075 7 N -0.261 5.261 8 C -0.006 4.006 9 C -0.184 4.184 10 C -0.091 4.091 11 C -0.267 4.267 12 C 0.071 3.929 13 C -0.520 4.520 14 H 0.071 0.929 15 C -0.166 4.166 16 N -0.480 5.480 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.178 1.178 21 C -0.244 4.244 22 C -0.080 4.080 23 C -0.062 4.062 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.921 -2.536 -5.538 22.751 hybrid contribution 0.349 -0.889 -0.239 0.984 sum -21.571 -3.424 -5.777 22.592 Atomic orbital electron populations 1.22391 0.93786 1.03411 1.03166 1.21265 0.92889 0.82628 0.94144 1.86693 1.77632 1.23192 1.49570 1.22253 0.95270 1.01782 0.98326 1.21470 0.96438 1.00858 0.96123 1.22124 1.00012 0.94577 0.90820 1.61808 1.07569 1.54819 1.01911 1.20718 0.90783 0.97016 0.92093 1.19387 0.94674 0.96551 1.07783 1.20740 0.92431 0.98170 0.97752 1.21080 0.95542 1.00598 1.09492 1.17852 0.93052 0.92454 0.89532 1.19478 0.90846 0.94583 1.47070 0.92928 1.26812 0.94492 1.04046 0.91274 1.69733 1.06274 1.35542 1.36482 0.85461 0.78755 0.76976 0.79710 1.18394 1.20353 1.17777 1.21195 0.93772 1.01511 1.07881 1.20758 0.93974 0.96148 0.97139 1.22152 0.87194 0.98606 0.98279 0.90675 0.90750 0.92088 0.77107 0.90480 0.89926 0.90909 0.92619 0.94821 0.92287 0.90238 0.94390 0.86575 0.88758 0.89672 0.88444 0.86412 0.90780 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 8.82 71.98 0.64 -1.52 16 2 C 0.13 2.46 1.00 -10.74 -0.01 2.45 16 3 O -0.56 -12.76 12.31 -148.98 -1.83 -14.60 16 4 C -0.14 -2.37 4.99 30.67 0.15 -2.22 16 5 C -0.11 -2.61 5.94 30.65 0.18 -2.43 16 6 C 0.05 1.48 5.16 86.33 0.45 1.92 16 7 N -0.54 -15.66 4.53 -900.88 -4.08 -19.74 16 8 C 0.12 3.71 5.11 85.56 0.44 4.15 16 9 C -0.18 -7.13 4.91 -19.67 -0.10 -7.23 16 10 C -0.07 -3.01 7.85 22.22 0.17 -2.84 16 11 C -0.25 -12.08 7.18 22.73 0.16 -11.92 16 12 C 0.07 3.92 5.10 -21.29 -0.11 3.82 16 13 C -0.49 -28.75 9.57 23.46 0.22 -28.52 16 14 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 15 C 0.05 2.65 5.40 85.26 0.46 3.11 16 16 N -0.85 -48.40 13.93 21.83 0.30 -48.10 16 17 Si 0.97 44.23 24.52 68.60 1.68 45.91 16 18 H -0.26 -11.14 6.71 99.48 0.67 -10.47 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.25 -11.86 6.86 99.48 0.68 -11.18 16 21 C -0.22 -10.94 9.80 22.73 0.22 -10.72 16 22 C -0.06 -2.60 9.67 22.22 0.21 -2.39 16 23 C 0.07 1.48 4.43 86.33 0.38 1.86 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.38 5.50 9.05 -74.06 -0.67 4.83 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.55 7.80 -2.39 -0.02 1.53 16 32 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 2.01 5.76 -2.39 -0.01 1.99 16 34 H 0.08 2.27 7.92 -2.39 -0.02 2.25 16 35 H 0.04 1.07 8.06 -2.38 -0.02 1.05 16 36 H 0.12 4.15 7.96 -2.91 -0.02 4.13 16 37 H 0.09 4.60 4.73 -2.91 -0.01 4.59 16 38 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 39 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -65.23 327.81 -0.18 -65.42 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.27 Total: 23.58 kcal Atomic # 6 Polarization: -55.96 SS G_CDS: 3.48 Total: -52.48 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -3.78 Total: -67.84 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.83 Total: -14.60 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.68 Total: 45.91 kcal Total: -65.23 -0.18 -65.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.581 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds