Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.50652 * 2 1 4 4 C 1.53123 * 109.50010 * 120.07867 * 2 1 3 5 5 C 1.53123 * 109.15807 * 177.59498 * 4 2 1 6 6 C 1.53036 * 109.27743 * 302.34293 * 5 4 2 7 7 N 1.46850 * 109.52546 * 59.18384 * 6 5 4 8 8 C 1.46895 * 111.00264 * 174.16101 * 7 6 5 9 9 C 1.50703 * 109.47296 * 66.04142 * 8 7 6 10 10 C 1.38634 * 119.74576 * 269.73094 * 9 8 7 11 11 C 1.37625 * 120.24159 * 179.72292 * 10 9 8 12 12 C 1.40723 * 119.74432 * 0.56488 * 11 10 9 13 13 C 1.41391 * 120.24196 * 179.68579 * 12 11 10 14 14 H 1.08004 * 120.00023 * 24.40685 * 13 12 11 15 15 C 1.39943 * 119.99960 * 204.41507 * 13 12 11 16 16 N 1.30823 * 120.00074 * 17.85445 * 15 13 12 17 17 Si 1.86797 * 119.99963 * 197.85318 * 15 13 12 18 18 H 1.48499 * 109.47063 * 60.00099 * 17 15 13 19 19 H 1.48501 * 109.46958 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47362 * 299.99791 * 17 15 13 21 21 C 1.40710 * 119.51232 * 359.70655 * 12 11 10 22 22 C 1.37618 * 119.74404 * 359.97438 * 21 12 11 23 23 C 1.46851 * 111.19175 * 298.25579 * 7 6 5 24 24 H 1.09004 * 109.47174 * 299.92667 * 1 2 3 25 25 H 1.08997 * 109.46914 * 59.92360 * 1 2 3 26 26 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 27 27 H 0.96700 * 114.00010 * 60.07587 * 3 2 1 28 28 H 1.08993 * 109.52349 * 57.69090 * 4 2 1 29 29 H 1.08996 * 109.52139 * 297.49316 * 4 2 1 30 30 H 1.09004 * 109.50146 * 182.40023 * 5 4 2 31 31 H 1.08998 * 109.50183 * 62.28472 * 5 4 2 32 32 H 1.08993 * 109.46648 * 299.16243 * 6 5 4 33 33 H 1.09007 * 109.45102 * 179.18892 * 6 5 4 34 34 H 1.08995 * 109.46902 * 186.04527 * 8 7 6 35 35 H 1.09002 * 109.46879 * 306.04453 * 8 7 6 36 36 H 1.07996 * 119.88113 * 359.97438 * 10 9 8 37 37 H 1.07999 * 120.12699 * 180.27619 * 11 10 9 38 38 H 0.97005 * 120.00228 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.12831 * 179.97438 * 21 12 11 40 40 H 1.08006 * 119.87151 * 179.97438 * 22 21 12 41 41 H 1.09002 * 109.46079 * 181.75640 * 23 7 6 42 42 H 1.08996 * 109.46250 * 301.72673 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0071 1.3470 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 3.5711 -0.7716 1.2111 6 6 4.0228 -1.4731 -0.0718 7 7 3.5092 -0.7426 -1.2376 8 6 4.0372 -1.3069 -2.4869 9 6 3.5010 -2.7028 -2.6737 10 6 4.2041 -3.7836 -2.1644 11 6 3.7210 -5.0624 -2.3241 12 6 2.5146 -5.2713 -3.0179 13 6 2.0120 -6.5811 -3.1939 14 1 2.2927 -7.3643 -2.5052 15 6 1.1509 -6.8626 -4.2606 16 7 1.0812 -6.0440 -5.2786 17 14 0.1012 -8.4075 -4.2308 18 1 -0.7938 -8.3750 -3.0462 19 1 -0.7178 -8.4733 -5.4677 20 1 0.9802 -9.6019 -4.1545 21 6 1.8124 -4.1672 -3.5354 22 6 2.3110 -2.8968 -3.3580 23 6 2.0409 -0.7240 -1.2477 24 1 -0.3634 0.5127 0.8907 25 1 -0.3633 0.5150 -0.8893 26 1 -0.3634 -1.0277 -0.0005 27 1 1.7231 1.8649 0.7656 28 1 1.6451 -1.7387 1.2696 29 1 1.7156 -0.1863 2.1398 30 1 3.9394 -1.3228 2.0764 31 1 3.9677 0.2435 1.2297 32 1 3.6374 -2.4926 -0.0833 33 1 5.1120 -1.4962 -0.1087 34 1 3.7283 -0.6836 -3.3261 35 1 5.1257 -1.3391 -2.4395 36 1 5.1323 -3.6213 -1.6367 37 1 4.2680 -5.9026 -1.9227 38 1 0.4841 -6.2389 -6.0178 39 1 0.8858 -4.3161 -4.0698 40 1 1.7740 -2.0479 -3.7548 41 1 1.6905 -0.2031 -2.1388 42 1 1.6647 -1.7470 -1.2537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335990401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -60.279210 kcal Electronic energy + Delta-G solvation = -21899.329792 eV Core-core repulsion = 18842.242120 eV Total energy + Delta-G solvation = -3057.087671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89765 -39.32926 -37.18596 -35.50972 -33.89323 -32.38240 -31.56046 -31.17255 -28.52500 -27.57922 -26.08195 -23.86499 -23.00766 -22.41922 -21.60291 -20.53817 -19.24254 -17.28833 -17.23236 -16.81585 -16.39724 -16.09246 -15.73778 -15.44424 -15.25716 -15.03792 -14.73157 -14.26660 -13.91115 -13.84408 -13.49948 -13.32208 -13.23895 -12.90360 -12.81794 -12.75300 -12.70079 -12.46376 -12.30569 -11.97844 -11.89057 -11.70441 -11.56584 -11.28898 -11.14687 -10.98564 -10.61347 -9.38232 -9.29611 -9.07909 -8.65872 -6.36537 0.92164 1.11095 1.35105 1.46286 1.50550 2.17854 2.66863 3.13633 3.40274 3.72559 3.82705 3.88719 4.03355 4.19094 4.32410 4.35233 4.41925 4.52836 4.59371 4.62410 4.66831 4.79957 4.87384 4.90624 4.95623 4.98937 5.02964 5.05490 5.08824 5.13368 5.21725 5.33033 5.33969 5.43777 5.47679 5.67011 5.92977 6.06854 6.12612 6.21750 6.35442 6.36414 6.67434 6.91286 7.00873 7.07019 8.29994 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.004677 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.956429 B = 5984.756989 C = 6329.947001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.138 3.862 3 O -0.556 6.556 4 C -0.143 4.143 5 C -0.106 4.106 6 C 0.050 3.950 7 N -0.517 5.517 8 C 0.115 3.885 9 C -0.233 4.233 10 C -0.076 4.076 11 C -0.245 4.245 12 C 0.081 3.919 13 C -0.503 4.503 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.190 4.190 22 C -0.089 4.089 23 C 0.072 3.928 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.383 0.617 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.288 0.712 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 10.067 10.570 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.097 3.903 3 O -0.363 6.363 4 C -0.181 4.181 5 C -0.143 4.143 6 C -0.078 4.078 7 N -0.239 5.239 8 C -0.012 4.012 9 C -0.236 4.236 10 C -0.095 4.095 11 C -0.265 4.265 12 C 0.079 3.921 13 C -0.533 4.533 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.451 5.451 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.210 4.210 22 C -0.108 4.108 23 C -0.056 4.056 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.231 0.769 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.389 10.418 9.811 14.316 hybrid contribution -1.022 -1.748 -0.121 2.028 sum -1.411 8.670 9.690 13.079 Atomic orbital electron populations 1.22425 0.94815 1.02645 1.03340 1.21119 0.92367 0.82801 0.94043 1.86645 1.77297 1.22593 1.49786 1.22256 0.96721 1.00874 0.98256 1.21475 0.95326 1.01538 0.95984 1.22141 0.99742 0.94959 0.90948 1.62444 1.07440 1.51856 1.02118 1.20882 0.99021 0.89377 0.91911 1.20073 0.98906 0.96212 1.08410 1.20646 0.98237 0.92086 0.98506 1.21160 0.98251 0.96439 1.10632 1.17947 0.90468 0.93795 0.89917 1.19816 1.26457 0.95857 1.11151 0.90843 1.26749 0.96321 1.01593 0.93193 1.69877 1.31450 1.38041 1.05759 0.85274 0.78270 0.77453 0.78858 1.18516 1.19069 1.18319 1.21247 1.01162 0.92228 1.06328 1.20714 0.96214 0.95545 0.98359 1.21974 0.88599 0.97562 0.97503 0.89751 0.92247 0.92421 0.76864 0.92569 0.89128 0.90490 0.90630 0.96294 0.90794 0.91381 0.90314 0.87063 0.88863 0.90126 0.88433 0.88463 0.92112 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 8.82 71.98 0.64 -3.10 16 2 C 0.14 3.43 1.00 -10.74 -0.01 3.42 16 3 O -0.56 -13.26 12.32 -148.98 -1.83 -15.10 16 4 C -0.14 -3.20 4.99 30.68 0.15 -3.05 16 5 C -0.11 -2.48 5.94 30.65 0.18 -2.30 16 6 C 0.05 1.49 4.83 86.32 0.42 1.91 16 7 N -0.52 -16.76 4.74 -900.92 -4.27 -21.04 16 8 C 0.12 4.04 5.55 85.56 0.47 4.52 16 9 C -0.23 -9.84 4.06 -19.67 -0.08 -9.92 16 10 C -0.08 -3.32 8.09 22.22 0.18 -3.14 16 11 C -0.25 -12.26 9.80 22.73 0.22 -12.03 16 12 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 13 C -0.50 -27.73 9.05 23.46 0.21 -27.52 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 15 C 0.04 1.86 5.14 85.26 0.44 2.30 16 16 N -0.83 -43.98 10.95 21.83 0.24 -43.74 16 17 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 19 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 22 C -0.09 -4.17 7.97 22.22 0.18 -3.99 16 23 C 0.07 2.34 3.50 86.33 0.30 2.64 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.38 5.54 9.05 -74.06 -0.67 4.87 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 32 H 0.02 0.66 6.56 -2.39 -0.02 0.64 16 33 H 0.07 2.07 8.06 -2.38 -0.02 2.05 16 34 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 36 H 0.11 4.21 8.04 -2.91 -0.02 4.19 16 37 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 39 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 40 H 0.10 4.19 8.01 -2.91 -0.02 4.16 16 41 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 42 H 0.03 1.24 6.46 -2.39 -0.02 1.22 16 Total: -1.00 -61.60 329.39 -0.13 -61.73 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.33 Total: 33.35 kcal Atomic # 6 Polarization: -59.27 SS G_CDS: 3.38 Total: -55.89 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -4.03 Total: -64.77 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.83 Total: -15.10 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -61.60 -0.13 -61.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335990401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.451 kcal (2) G-P(sol) polarization free energy of solvation -61.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds